Wall clock time and date at job start Sat Apr 11 2020 06:50:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09000 * 109.47292 * 2 1
4 4 O 1.42901 * 109.46887 * 120.00127 * 2 1 3
5 5 C 1.35910 * 116.99659 * 275.26307 * 4 2 1
6 6 C 1.39847 * 120.09764 * 5.36951 * 5 4 2
7 7 N 1.31023 * 121.66465 * 179.97438 * 6 5 4
8 8 C 1.33689 * 121.39920 * 0.02562 * 7 6 5
9 9 C 1.40606 * 120.99905 * 180.02562 * 8 7 6
10 10 C 1.36069 * 119.76615 * 179.97438 * 9 8 7
11 11 C 1.39365 * 121.06971 * 0.04133 * 10 9 8
12 12 C 1.36127 * 120.86374 * 359.97438 * 11 10 9
13 13 C 1.40463 * 119.62264 * 0.02562 * 12 11 10
14 14 C 1.37007 * 120.09094 * 185.09403 * 5 4 2
15 15 C 1.50701 * 109.46947 * 239.99603 * 2 1 3
16 16 O 1.21279 * 119.99856 * 245.00177 * 15 2 1
17 17 N 1.34775 * 119.99554 * 65.00804 * 15 2 1
18 18 C 1.46499 * 119.99739 * 179.97438 * 17 15 2
19 19 C 1.50698 * 109.47459 * 179.97438 * 18 17 15
20 20 O 1.21296 * 119.99556 * 0.02562 * 19 18 17
21 21 N 1.34777 * 120.00410 * 179.97438 * 19 18 17
22 22 C 1.37094 * 120.00029 * 179.97438 * 21 19 18
23 23 H 1.07998 * 120.00158 * 0.02562 * 22 21 19
24 24 C 1.38952 * 119.99860 * 180.02562 * 22 21 19
25 25 N 1.31410 * 120.00140 * 0.02562 * 24 22 21
26 26 Si 1.86802 * 119.99907 * 180.02562 * 24 22 21
27 27 H 1.48501 * 109.47296 * 0.02562 * 26 24 22
28 28 H 1.48500 * 109.46867 * 120.00081 * 26 24 22
29 29 H 1.48495 * 109.47038 * 240.00074 * 26 24 22
30 30 H 1.08997 * 109.47056 * 300.00620 * 1 2 3
31 31 H 1.09000 * 109.47292 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.46644 * 59.99750 * 1 2 3
33 33 H 1.08003 * 119.16413 * 359.97438 * 6 5 4
34 34 H 1.08004 * 120.11120 * 359.97087 * 9 8 7
35 35 H 1.08000 * 119.46490 * 180.02562 * 10 9 8
36 36 H 1.07998 * 119.56585 * 180.02562 * 11 10 9
37 37 H 1.08000 * 120.19395 * 179.97438 * 12 11 10
38 38 H 1.07999 * 120.93938 * 0.02562 * 14 5 4
39 39 H 0.96994 * 120.00572 * 359.97438 * 17 15 2
40 40 H 1.08995 * 109.47387 * 300.00115 * 18 17 15
41 41 H 1.09009 * 109.46920 * 59.99767 * 18 17 15
42 42 H 0.96998 * 119.99398 * 0.02562 * 21 19 18
43 43 H 0.96994 * 119.99988 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 8 2.0063 -0.6737 1.1668
5 6 2.1072 0.0613 2.3056
6 6 1.6479 1.3820 2.3309
7 7 1.7296 2.1179 3.4118
8 6 2.2576 1.6386 4.5426
9 6 2.3405 2.4357 5.6979
10 6 2.8822 1.9221 6.8355
11 6 3.3601 0.6136 6.8775
12 6 3.2973 -0.1883 5.7793
13 6 2.7443 0.3085 4.5875
14 6 2.6540 -0.4914 3.4337
15 6 2.0323 -0.7105 -1.2304
16 8 2.6529 -1.7468 -1.1214
17 7 1.7919 -0.1942 -2.4519
18 6 2.2807 -0.8846 -3.6481
19 6 1.8815 -0.1067 -4.8755
20 8 1.2512 0.9234 -4.7622
21 7 2.2258 -0.5549 -6.0990
22 6 1.8622 0.1525 -7.2156
23 1 1.3002 1.0693 -7.1148
24 6 2.2167 -0.3099 -8.4770
25 7 2.9000 -1.4257 -8.5998
26 14 1.7219 0.6544 -9.9985
27 1 0.9647 1.8656 -9.5923
28 1 2.9397 1.0598 -10.7453
29 1 0.8684 -0.1953 -10.8672
30 1 -0.3633 0.5139 0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3633 0.5139 -0.8900
33 1 1.2150 1.8059 1.4368
34 1 1.9755 3.4521 5.6822
35 1 2.9432 2.5386 7.7202
36 1 3.7850 0.2306 7.7935
37 1 3.6712 -1.2006 5.8238
38 1 3.0108 -1.5108 3.4357
39 1 1.2954 0.6344 -2.5392
40 1 3.3670 -0.9625 -3.6042
41 1 1.8463 -1.8833 -3.6941
42 1 2.7302 -1.3785 -6.1895
43 1 3.1472 -1.7487 -9.4803
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344165372.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:09
Heat of formation + Delta-G solvation = -74.725174 kcal
Electronic energy + Delta-G solvation = -27807.202388 eV
Core-core repulsion = 23623.905143 eV
Total energy + Delta-G solvation = -4183.297244 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.25765 -41.28348 -40.27944 -39.48456 -37.49504 -36.28171 -35.44455 -34.50989
-33.40813 -32.91068 -31.27451 -30.41605 -29.28593 -26.68133 -25.66220 -25.45111
-24.04715 -23.11337 -21.60228 -21.42429 -20.13351 -19.68096 -19.22375 -18.96191
-17.86963 -17.32851 -17.08937 -17.04886 -16.60011 -16.41189 -16.35456 -15.82298
-15.67660 -15.54031 -15.20477 -14.97889 -14.81333 -14.70892 -14.42902 -14.05706
-13.99672 -13.68807 -13.55345 -13.37509 -13.08385 -12.91829 -12.72814 -12.65028
-12.44376 -12.43933 -12.29015 -12.10943 -11.57914 -11.18410 -11.00073 -10.60937
-10.56812 -10.31206 -10.09273 -9.59601 -9.04598 -8.51391 -6.01451 -0.65420
-0.22054 0.96751 1.33155 1.34393 1.37550 1.44373 1.57856 1.90038
1.90416 2.24645 2.41121 3.06065 3.09014 3.16054 3.22523 3.31397
3.50089 3.62976 3.69121 3.77793 3.85173 4.01194 4.18651 4.21021
4.29273 4.40158 4.40746 4.43619 4.52228 4.60710 4.72896 4.77902
4.97849 5.07394 5.08366 5.14082 5.32749 5.38812 5.44221 5.49844
5.85629 5.91350 6.03574 6.37147 6.47911 6.72202 6.99657 7.03655
7.43799 7.93401 8.65592
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.033105 B = 0.001654 C = 0.001617
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 845.587717 B =16919.813693 C =17316.553510
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.069 3.931
3 H 0.126 0.874
4 O -0.297 6.297
5 C 0.064 3.936
6 C 0.061 3.939
7 N -0.457 5.457
8 C 0.068 3.932
9 C -0.101 4.101
10 C -0.104 4.104
11 C -0.101 4.101
12 C -0.114 4.114
13 C -0.077 4.077
14 C -0.111 4.111
15 C 0.519 3.481
16 O -0.564 6.564
17 N -0.696 5.696
18 C 0.121 3.879
19 C 0.434 3.566
20 O -0.621 6.621
21 N -0.559 5.559
22 C -0.336 4.336
23 H 0.088 0.912
24 C -0.010 4.010
25 N -0.916 5.916
26 Si 0.997 3.003
27 H -0.269 1.269
28 H -0.273 1.273
29 H -0.272 1.272
30 H 0.092 0.908
31 H 0.068 0.932
32 H 0.099 0.901
33 H 0.185 0.815
34 H 0.142 0.858
35 H 0.160 0.840
36 H 0.161 0.839
37 H 0.151 0.849
38 H 0.157 0.843
39 H 0.418 0.582
40 H 0.096 0.904
41 H 0.097 0.903
42 H 0.399 0.601
43 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.816 3.527 29.260 29.483
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.230 4.230
2 C 0.010 3.990
3 H 0.143 0.857
4 O -0.209 6.209
5 C 0.016 3.984
6 C -0.112 4.112
7 N -0.166 5.166
8 C -0.053 4.053
9 C -0.119 4.119
10 C -0.124 4.124
11 C -0.119 4.119
12 C -0.133 4.133
13 C -0.079 4.079
14 C -0.137 4.137
15 C 0.305 3.695
16 O -0.442 6.442
17 N -0.352 5.352
18 C -0.006 4.006
19 C 0.221 3.779
20 O -0.509 6.509
21 N -0.195 5.195
22 C -0.466 4.466
23 H 0.106 0.894
24 C -0.211 4.211
25 N -0.556 5.556
26 Si 0.820 3.180
27 H -0.193 1.193
28 H -0.198 1.198
29 H -0.197 1.197
30 H 0.111 0.889
31 H 0.088 0.912
32 H 0.118 0.882
33 H 0.202 0.798
34 H 0.160 0.840
35 H 0.178 0.822
36 H 0.178 0.822
37 H 0.169 0.831
38 H 0.174 0.826
39 H 0.257 0.743
40 H 0.114 0.886
41 H 0.115 0.885
42 H 0.233 0.767
43 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -0.952 4.034 29.269 29.561
hybrid contribution 0.177 -0.628 -1.462 1.601
sum -0.775 3.406 27.807 28.026
Atomic orbital electron populations
1.22388 0.90192 1.04738 1.05732 1.22301 0.97383 0.97336 0.82012
0.85680 1.86215 1.81452 1.37324 1.15869 1.19840 0.98588 0.92308
0.87618 1.23573 0.99274 0.90085 0.98306 1.67949 1.13373 1.36194
0.99054 1.19288 0.99704 0.92643 0.93661 1.21016 0.99741 1.00223
0.90938 1.21309 0.96490 0.96199 0.98358 1.21388 0.97553 0.93659
0.99273 1.21275 0.99232 1.01548 0.91201 1.18817 0.99937 0.93929
0.95255 1.20940 1.00739 1.01840 0.90196 1.20441 0.79415 0.85100
0.84519 1.90721 1.41612 1.24931 1.86950 1.45493 1.57291 1.28532
1.03889 1.20814 1.01033 0.96067 0.82720 1.20346 0.84879 0.87589
0.85105 1.90478 1.46394 1.27524 1.86530 1.41846 1.48814 1.24201
1.04598 1.19787 1.34737 1.07482 0.84552 0.89397 1.26119 0.96020
0.97233 1.01734 1.69682 1.38001 1.21612 1.26303 0.84813 0.78201
0.78046 0.76936 1.19343 1.19788 1.19729 0.88889 0.91241 0.88223
0.79849 0.84050 0.82208 0.82180 0.83121 0.82560 0.74251 0.88634
0.88490 0.76720 0.91107
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.90 9.12 71.98 0.66 -2.25 16
2 C 0.07 1.50 2.64 29.85 0.08 1.58 16
3 H 0.13 2.07 6.31 -2.39 -0.02 2.06 16
4 O -0.30 -7.55 9.33 -73.55 -0.69 -8.23 16
5 C 0.06 1.44 6.57 22.37 0.15 1.59 16
6 C 0.06 1.28 9.39 85.20 0.80 2.08 16
7 N -0.46 -10.58 10.33 -188.23 -1.95 -12.53 16
8 C 0.07 1.46 6.60 40.30 0.27 1.73 16
9 C -0.10 -1.62 9.98 22.34 0.22 -1.40 16
10 C -0.10 -1.11 9.94 22.04 0.22 -0.89 16
11 C -0.10 -1.00 9.96 22.05 0.22 -0.78 16
12 C -0.11 -1.55 9.77 22.32 0.22 -1.34 16
13 C -0.08 -1.53 5.74 -21.28 -0.12 -1.65 16
14 C -0.11 -2.33 9.82 22.58 0.22 -2.11 16
15 C 0.52 15.31 7.18 87.66 0.63 15.94 16
16 O -0.56 -21.13 16.51 15.96 0.26 -20.87 16
17 N -0.70 -20.77 5.49 -466.79 -2.56 -23.34 16
18 C 0.12 4.17 6.15 85.63 0.53 4.70 16
19 C 0.43 19.09 7.85 87.66 0.69 19.78 16
20 O -0.62 -30.43 15.24 -3.08 -0.05 -30.47 16
21 N -0.56 -27.24 5.29 -306.98 -1.62 -28.86 16
22 C -0.34 -18.10 9.68 84.04 0.81 -17.28 16
23 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16
24 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16
25 N -0.92 -47.95 13.05 21.66 0.28 -47.67 16
26 Si 1.00 41.08 29.55 68.60 2.03 43.11 16
27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
28 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16
29 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16
30 H 0.09 1.24 6.89 -2.39 -0.02 1.23 16
31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16
32 H 0.10 1.45 7.92 -2.38 -0.02 1.43 16
33 H 0.18 2.83 5.37 -2.91 -0.02 2.81 16
34 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16
35 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16
36 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16
37 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16
38 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16
39 H 0.42 11.68 7.22 -92.71 -0.67 11.01 16
40 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16
41 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16
42 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16
43 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16
Total: -1.00 -72.05 373.80 1.45 -70.60
By element:
Atomic # 1 Polarization: 38.95 SS G_CDS: -0.31 Total: 38.64 kcal
Atomic # 6 Polarization: 13.58 SS G_CDS: 6.05 Total: 19.63 kcal
Atomic # 7 Polarization: -106.55 SS G_CDS: -5.85 Total: -112.40 kcal
Atomic # 8 Polarization: -59.11 SS G_CDS: -0.47 Total: -59.58 kcal
Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal
Total: -72.05 1.45 -70.60 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344165372.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.122 kcal
(2) G-P(sol) polarization free energy of solvation -72.052 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.174 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.725 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds