Wall clock time and date at job start Sat Apr 11 2020 06:49:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35991 * 117.00364 * 2 1
4 4 C 1.38172 * 119.99794 * 359.72321 * 3 2 1
5 5 C 1.39749 * 119.84384 * 179.76940 * 4 3 2
6 6 C 1.43205 * 120.07604 * 180.25314 * 5 4 3
7 7 N 5.84102 * 81.26458 * 359.97438 * 2 1 3
8 8 C 1.39735 * 119.84798 * 0.53008 * 5 4 3
9 9 C 1.37820 * 119.99270 * 359.72750 * 8 5 4
10 10 C 1.38804 * 120.15551 * 359.97438 * 9 8 5
11 11 O 1.35847 * 119.91787 * 180.02562 * 10 9 8
12 12 C 1.42897 * 117.00316 * 0.02562 * 11 10 9
13 13 C 1.50698 * 109.47155 * 180.02562 * 12 11 10
14 14 O 1.21283 * 120.00008 * 359.97438 * 13 12 11
15 15 N 1.34780 * 119.99871 * 180.02562 * 13 12 11
16 16 C 1.46499 * 119.99886 * 180.02562 * 15 13 12
17 17 C 1.50701 * 109.47693 * 89.99361 * 16 15 13
18 18 H 1.08007 * 119.99346 * 359.97438 * 17 16 15
19 19 C 1.37872 * 120.00221 * 179.97438 * 17 16 15
20 20 N 1.31515 * 120.00081 * 0.02562 * 19 17 16
21 21 Si 1.86799 * 120.00175 * 179.97438 * 19 17 16
22 22 H 1.48507 * 109.46828 * 60.00018 * 21 19 17
23 23 H 1.48498 * 109.47473 * 180.02562 * 21 19 17
24 24 H 1.48507 * 109.47179 * 300.00655 * 21 19 17
25 25 C 1.46495 * 120.00120 * 359.97438 * 15 13 12
26 26 C 1.53001 * 109.46809 * 90.00647 * 25 15 13
27 27 C 1.47202 * 109.47243 * 179.97438 * 26 25 15
28 28 N 9.25075 * 161.28506 * 29.06501 * 2 1 3
29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.46938 * 59.99845 * 1 2 3
31 31 H 1.09004 * 109.46926 * 299.99967 * 1 2 3
32 32 H 1.08001 * 120.07368 * 0.02562 * 4 3 2
33 33 H 1.07998 * 120.00086 * 179.70555 * 8 5 4
34 34 H 1.08000 * 119.92183 * 179.97438 * 9 8 5
35 35 H 1.09003 * 109.46794 * 300.00116 * 12 11 10
36 36 H 1.08998 * 109.47235 * 59.99996 * 12 11 10
37 37 H 1.09003 * 109.47378 * 209.99968 * 16 15 13
38 38 H 1.09009 * 109.46862 * 329.99063 * 16 15 13
39 39 H 0.97000 * 120.00089 * 180.02562 * 20 19 17
40 40 H 1.09001 * 109.47327 * 210.00331 * 25 15 13
41 41 H 1.08994 * 109.47384 * 330.00732 * 25 15 13
42 42 H 1.09001 * 109.46918 * 299.99934 * 26 25 15
43 43 H 1.09002 * 109.47422 * 59.99954 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2117 0.0000
4 6 1.2940 2.3705 -0.0058
5 6 1.9318 3.6139 -0.0009
6 6 1.1568 4.8181 -0.0014
7 7 0.5419 5.7733 -0.0026
8 6 3.3276 3.6795 -0.0014
9 6 4.0719 2.5196 -0.0010
10 6 3.4383 1.2846 0.0004
11 8 4.1766 0.1443 0.0013
12 6 5.5980 0.2916 0.0013
13 6 6.2441 -1.0698 0.0017
14 8 5.5553 -2.0680 0.0024
15 7 7.5876 -1.1781 0.0023
16 6 8.2157 -2.5016 0.0021
17 6 8.4317 -2.9551 -1.4187
18 1 8.1307 -2.3209 -2.2396
19 6 9.0135 -4.1794 -1.6708
20 7 9.3796 -4.9517 -0.6712
21 14 9.2806 -4.7418 -3.4319
22 1 10.1632 -3.7742 -4.1321
23 1 9.9174 -6.0833 -3.4321
24 1 7.9728 -4.8151 -4.1319
25 6 8.4196 0.0276 0.0019
26 6 8.7088 0.4480 1.4443
27 6 9.5454 1.6592 1.4441
28 7 10.1907 2.5944 1.4420
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 0.5139 0.8900
32 1 0.2154 2.3154 -0.0099
33 1 3.8231 4.6391 -0.0024
34 1 5.1506 2.5716 -0.0018
35 1 5.9064 0.8396 -0.8891
36 1 5.9063 0.8408 0.8908
37 1 9.1753 -2.4484 0.5164
38 1 7.5673 -3.2116 0.5156
39 1 9.7893 -5.8129 -0.8485
40 1 9.3587 -0.1791 -0.5115
41 1 7.8937 0.8319 -0.5124
42 1 7.7698 0.6547 1.9578
43 1 9.2348 -0.3563 1.9588
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000036772211.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:05
Heat of formation + Delta-G solvation = -15.032331 kcal
Electronic energy + Delta-G solvation = -28513.943476 eV
Core-core repulsion = 24333.234708 eV
Total energy + Delta-G solvation = -4180.708768 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.01471 -39.61848 -38.41136 -37.83371 -36.93110 -36.17771 -35.33731 -32.97900
-31.09142 -30.96540 -30.86898 -29.03467 -27.64598 -26.76086 -24.17386 -23.83815
-23.17002 -22.27031 -19.81876 -18.84782 -18.48672 -17.79526 -17.11244 -16.74973
-16.58959 -16.43574 -16.23950 -15.75018 -15.63858 -15.04287 -14.79865 -14.56777
-14.34562 -14.18059 -14.09151 -13.94126 -13.70267 -13.46944 -13.04901 -12.77700
-12.69153 -12.60254 -12.54752 -12.32747 -12.17959 -11.87824 -11.71035 -11.60728
-11.41519 -11.34054 -11.22487 -11.06351 -10.90118 -10.66660 -10.24599 -9.80046
-9.22742 -9.16459 -8.51678 -8.17919 -7.99628 -6.13822 -4.18941 0.42259
0.89405 2.34258 2.56028 2.59707 2.67516 2.72269 2.96199 3.08106
3.27792 3.33085 3.36166 3.47401 3.52858 3.64196 4.06990 4.34970
4.39520 4.46812 4.67213 4.70329 4.75623 4.83839 4.90199 4.91725
4.95592 5.02098 5.06165 5.15839 5.21978 5.27791 5.33818 5.47215
5.70018 5.70422 5.85242 5.94030 6.07793 6.66160 6.84863 7.16141
7.22955 7.23915 7.33392 7.48495 7.81465 8.06299 8.10501 8.69945
8.86760 9.46872 10.94306
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.010406 B = 0.002801 C = 0.002357
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2690.133492 B = 9994.321084 C =11877.299043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 O -0.294 6.294
3 C 0.102 3.898
4 C -0.128 4.128
5 C -0.039 4.039
6 C 0.262 3.738
7 N -0.425 5.425
8 C -0.058 4.058
9 C -0.183 4.183
10 C 0.143 3.857
11 O -0.267 6.267
12 C 0.032 3.968
13 C 0.510 3.490
14 O -0.503 6.503
15 N -0.593 5.593
16 C 0.247 3.753
17 C -0.532 4.532
18 H 0.058 0.942
19 C 0.064 3.936
20 N -0.893 5.893
21 Si 0.897 3.103
22 H -0.277 1.277
23 H -0.286 1.286
24 H -0.276 1.276
25 C 0.113 3.887
26 C -0.052 4.052
27 C 0.215 3.785
28 N -0.442 5.442
29 H 0.104 0.896
30 H 0.056 0.944
31 H 0.056 0.944
32 H 0.144 0.856
33 H 0.138 0.862
34 H 0.148 0.852
35 H 0.093 0.907
36 H 0.090 0.910
37 H 0.039 0.961
38 H 0.049 0.951
39 H 0.265 0.735
40 H 0.099 0.901
41 H 0.074 0.926
42 H 0.106 0.894
43 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.708 13.836 3.760 18.510
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.207 6.207
3 C 0.056 3.944
4 C -0.149 4.149
5 C -0.043 4.043
6 C -0.053 4.053
7 N -0.100 5.100
8 C -0.079 4.079
9 C -0.202 4.202
10 C 0.094 3.906
11 O -0.177 6.177
12 C -0.047 4.047
13 C 0.294 3.706
14 O -0.377 6.377
15 N -0.326 5.326
16 C 0.129 3.871
17 C -0.571 4.571
18 H 0.077 0.923
19 C -0.139 4.139
20 N -0.531 5.531
21 Si 0.725 3.275
22 H -0.202 1.202
23 H -0.212 1.212
24 H -0.201 1.201
25 C -0.013 4.013
26 C -0.094 4.094
27 C -0.103 4.103
28 N -0.119 5.119
29 H 0.123 0.877
30 H 0.074 0.926
31 H 0.074 0.926
32 H 0.162 0.838
33 H 0.156 0.844
34 H 0.166 0.834
35 H 0.111 0.889
36 H 0.108 0.892
37 H 0.057 0.943
38 H 0.067 0.933
39 H 0.075 0.925
40 H 0.118 0.882
41 H 0.092 0.908
42 H 0.124 0.876
43 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -11.966 15.522 3.799 19.963
hybrid contribution 0.191 -0.740 -0.974 1.238
sum -11.775 14.782 2.825 19.109
Atomic orbital electron populations
1.23152 0.78328 1.04594 1.01126 1.86332 1.21110 1.24694 1.88528
1.17984 0.89025 0.85358 1.02048 1.20971 1.00290 0.89774 1.03870
1.15574 0.91611 0.86722 1.10412 1.25602 0.93367 0.92870 0.93446
1.81265 1.08635 1.10665 1.09482 1.20854 0.91203 0.98846 0.96979
1.21051 1.01087 0.90343 1.07670 1.18648 0.88587 0.86384 0.96945
1.86318 1.17524 1.26920 1.86983 1.22891 0.79576 0.98879 1.03349
1.19661 0.82961 0.89281 0.78719 1.90771 1.61672 1.38040 1.47184
1.48158 1.03811 1.08648 1.72020 1.19412 0.93148 0.76715 0.97871
1.21357 1.40458 1.03129 0.92160 0.92329 1.24906 0.95314 0.96218
0.97441 1.69901 1.41187 1.11185 1.30837 0.86569 0.78500 0.77830
0.84608 1.20228 1.21185 1.20102 1.21380 0.98461 0.88215 0.93238
1.19918 0.98186 0.89856 1.01411 1.29075 0.93731 0.94270 0.93234
1.81239 1.10121 1.12078 1.08481 0.87741 0.92582 0.92582 0.83844
0.84414 0.83448 0.88948 0.89195 0.94337 0.93344 0.92525 0.88220
0.90758 0.87582 0.86194
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.16 9.81 101.05 0.99 1.15 16
2 O -0.29 -3.44 10.27 -34.39 -0.35 -3.79 16
3 C 0.10 1.07 6.69 -39.18 -0.26 0.81 16
4 C -0.13 -1.04 8.74 -39.04 -0.34 -1.38 16
5 C -0.04 -0.32 5.74 -106.85 -0.61 -0.93 16
6 C 0.26 2.48 15.33 -22.47 -0.34 2.13 16
7 N -0.42 -4.97 18.54 41.84 0.78 -4.20 16
8 C -0.06 -0.40 9.75 -39.18 -0.38 -0.79 16
9 C -0.18 -1.41 9.01 -39.52 -0.36 -1.77 16
10 C 0.14 1.56 6.71 -38.95 -0.26 1.30 16
11 O -0.27 -3.74 9.44 -46.94 -0.44 -4.18 16
12 C 0.03 0.37 3.77 36.00 0.14 0.50 16
13 C 0.51 8.78 7.75 -10.98 -0.09 8.70 16
14 O -0.50 -11.56 16.08 -14.36 -0.23 -11.79 16
15 N -0.59 -9.83 2.46 -175.06 -0.43 -10.26 16
16 C 0.25 5.50 5.16 -5.19 -0.03 5.47 16
17 C -0.53 -13.61 9.39 -34.44 -0.32 -13.93 16
18 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16
19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16
20 N -0.89 -24.73 13.29 55.43 0.74 -24.00 16
21 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16
22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
23 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16
24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
25 C 0.11 1.26 5.17 -4.04 -0.02 1.24 16
26 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16
27 C 0.22 2.22 15.43 -20.75 -0.32 1.89 16
28 N -0.44 -5.82 18.54 42.16 0.78 -5.04 16
29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16
31 H 0.06 0.29 7.67 -51.93 -0.40 -0.10 16
32 H 0.14 0.87 6.28 -52.49 -0.33 0.54 16
33 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16
34 H 0.15 0.79 6.27 -52.49 -0.33 0.46 16
35 H 0.09 0.83 6.91 -51.93 -0.36 0.47 16
36 H 0.09 0.69 6.70 -51.93 -0.35 0.34 16
37 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16
38 H 0.05 1.25 7.42 -51.92 -0.39 0.87 16
39 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16
40 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16
41 H 0.07 0.61 6.44 -51.93 -0.33 0.28 16
42 H 0.11 0.66 7.22 -51.93 -0.37 0.28 16
43 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16
LS Contribution 388.56 15.07 5.86 5.86
Total: -1.00 -35.54 388.56 -5.72 -41.26
By element:
Atomic # 1 Polarization: 0.02 SS G_CDS: -4.91 Total: -4.89 kcal
Atomic # 6 Polarization: 7.88 SS G_CDS: -2.48 Total: 5.39 kcal
Atomic # 7 Polarization: -45.35 SS G_CDS: 1.86 Total: -43.48 kcal
Atomic # 8 Polarization: -18.74 SS G_CDS: -1.03 Total: -19.77 kcal
Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -35.54 -5.72 -41.26 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000036772211.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.229 kcal
(2) G-P(sol) polarization free energy of solvation -35.541 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.312 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds