Wall clock time and date at job start Sat Apr 11 2020 06:49:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35991 * 117.00364 * 2 1
4 4 C 1.38172 * 119.99794 * 359.72321 * 3 2 1
5 5 C 1.39749 * 119.84384 * 179.76940 * 4 3 2
6 6 C 1.43205 * 120.07604 * 180.25314 * 5 4 3
7 7 N 5.84102 * 81.26458 * 359.97438 * 2 1 3
8 8 C 1.39735 * 119.84798 * 0.53008 * 5 4 3
9 9 C 1.37820 * 119.99270 * 359.72750 * 8 5 4
10 10 C 1.38804 * 120.15551 * 359.97438 * 9 8 5
11 11 O 1.35847 * 119.91787 * 180.02562 * 10 9 8
12 12 C 1.42897 * 117.00316 * 0.02562 * 11 10 9
13 13 C 1.50698 * 109.47155 * 180.02562 * 12 11 10
14 14 O 1.21283 * 120.00008 * 359.97438 * 13 12 11
15 15 N 1.34780 * 119.99871 * 180.02562 * 13 12 11
16 16 C 1.46499 * 119.99886 * 180.02562 * 15 13 12
17 17 C 1.50701 * 109.47693 * 89.99361 * 16 15 13
18 18 H 1.08007 * 119.99346 * 359.97438 * 17 16 15
19 19 C 1.37872 * 120.00221 * 179.97438 * 17 16 15
20 20 N 1.31515 * 120.00081 * 0.02562 * 19 17 16
21 21 Si 1.86799 * 120.00175 * 179.97438 * 19 17 16
22 22 H 1.48507 * 109.46828 * 60.00018 * 21 19 17
23 23 H 1.48498 * 109.47473 * 180.02562 * 21 19 17
24 24 H 1.48507 * 109.47179 * 300.00655 * 21 19 17
25 25 C 1.46495 * 120.00120 * 359.97438 * 15 13 12
26 26 C 1.53001 * 109.46809 * 90.00647 * 25 15 13
27 27 C 1.47202 * 109.47243 * 179.97438 * 26 25 15
28 28 N 9.25075 * 161.28506 * 29.06501 * 2 1 3
29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.46938 * 59.99845 * 1 2 3
31 31 H 1.09004 * 109.46926 * 299.99967 * 1 2 3
32 32 H 1.08001 * 120.07368 * 0.02562 * 4 3 2
33 33 H 1.07998 * 120.00086 * 179.70555 * 8 5 4
34 34 H 1.08000 * 119.92183 * 179.97438 * 9 8 5
35 35 H 1.09003 * 109.46794 * 300.00116 * 12 11 10
36 36 H 1.08998 * 109.47235 * 59.99996 * 12 11 10
37 37 H 1.09003 * 109.47378 * 209.99968 * 16 15 13
38 38 H 1.09009 * 109.46862 * 329.99063 * 16 15 13
39 39 H 0.97000 * 120.00089 * 180.02562 * 20 19 17
40 40 H 1.09001 * 109.47327 * 210.00331 * 25 15 13
41 41 H 1.08994 * 109.47384 * 330.00732 * 25 15 13
42 42 H 1.09001 * 109.46918 * 299.99934 * 26 25 15
43 43 H 1.09002 * 109.47422 * 59.99954 * 26 25 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2117 0.0000
4 6 1.2940 2.3705 -0.0058
5 6 1.9318 3.6139 -0.0009
6 6 1.1568 4.8181 -0.0014
7 7 0.5419 5.7733 -0.0026
8 6 3.3276 3.6795 -0.0014
9 6 4.0719 2.5196 -0.0010
10 6 3.4383 1.2846 0.0004
11 8 4.1766 0.1443 0.0013
12 6 5.5980 0.2916 0.0013
13 6 6.2441 -1.0698 0.0017
14 8 5.5553 -2.0680 0.0024
15 7 7.5876 -1.1781 0.0023
16 6 8.2157 -2.5016 0.0021
17 6 8.4317 -2.9551 -1.4187
18 1 8.1307 -2.3209 -2.2396
19 6 9.0135 -4.1794 -1.6708
20 7 9.3796 -4.9517 -0.6712
21 14 9.2806 -4.7418 -3.4319
22 1 10.1632 -3.7742 -4.1321
23 1 9.9174 -6.0833 -3.4321
24 1 7.9728 -4.8151 -4.1319
25 6 8.4196 0.0276 0.0019
26 6 8.7088 0.4480 1.4443
27 6 9.5454 1.6592 1.4441
28 7 10.1907 2.5944 1.4420
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 0.5139 0.8900
32 1 0.2154 2.3154 -0.0099
33 1 3.8231 4.6391 -0.0024
34 1 5.1506 2.5716 -0.0018
35 1 5.9064 0.8396 -0.8891
36 1 5.9063 0.8408 0.8908
37 1 9.1753 -2.4484 0.5164
38 1 7.5673 -3.2116 0.5156
39 1 9.7893 -5.8129 -0.8485
40 1 9.3587 -0.1791 -0.5115
41 1 7.8937 0.8319 -0.5124
42 1 7.7698 0.6547 1.9578
43 1 9.2348 -0.3563 1.9588
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000036772211.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:04
Heat of formation + Delta-G solvation = -37.099208 kcal
Electronic energy + Delta-G solvation = -28514.900368 eV
Core-core repulsion = 24333.234708 eV
Total energy + Delta-G solvation = -4181.665660 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.75626 -40.75648 -39.29978 -38.58482 -37.91393 -36.95759 -36.62427 -34.83913
-32.15984 -31.79850 -31.52021 -30.22051 -28.31736 -28.13631 -25.28459 -24.88070
-24.23403 -23.17606 -20.53496 -20.02403 -19.31887 -18.80723 -18.30850 -17.91279
-17.51598 -17.35950 -17.28282 -16.87122 -16.49498 -16.20317 -15.69876 -15.60911
-15.38084 -15.08366 -14.93468 -14.73839 -14.61701 -14.44322 -14.21559 -14.00639
-13.57779 -13.48160 -13.41829 -13.32407 -13.24543 -13.13229 -12.88816 -12.67607
-12.49434 -12.34198 -12.21649 -12.16204 -12.09687 -11.91398 -11.72286 -11.65111
-10.56531 -10.54876 -9.83015 -9.49067 -8.89046 -8.15000 -6.26609 -0.24083
0.30590 1.42999 1.46356 1.51976 1.60974 1.62932 1.72149 1.89794
1.92308 1.94746 2.38261 2.43436 2.62632 2.82738 2.85859 3.15247
3.19744 3.63099 3.84278 3.89628 4.05749 4.12559 4.13610 4.15273
4.20808 4.26128 4.42170 4.45390 4.63547 4.64713 4.77166 4.87938
4.90330 5.10747 5.13975 5.14271 5.25513 5.37712 5.50794 5.62334
5.87954 6.06339 6.15592 6.44885 6.55838 6.68177 6.74188 6.83633
7.35832 7.50216 8.91598
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.010406 B = 0.002801 C = 0.002357
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2690.133492 B = 9994.321084 C =11877.299043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 O -0.332 6.332
3 C 0.079 3.921
4 C -0.118 4.118
5 C -0.042 4.042
6 C 0.286 3.714
7 N -0.466 5.466
8 C -0.046 4.046
9 C -0.170 4.170
10 C 0.120 3.880
11 O -0.307 6.307
12 C 0.040 3.960
13 C 0.502 3.498
14 O -0.576 6.576
15 N -0.591 5.591
16 C 0.260 3.740
17 C -0.540 4.540
18 H 0.056 0.944
19 C 0.011 3.989
20 N -0.926 5.926
21 Si 0.955 3.045
22 H -0.261 1.261
23 H -0.285 1.285
24 H -0.281 1.281
25 C 0.107 3.893
26 C -0.041 4.041
27 C 0.247 3.753
28 N -0.489 5.489
29 H 0.108 0.892
30 H 0.069 0.931
31 H 0.071 0.929
32 H 0.160 0.840
33 H 0.166 0.834
34 H 0.180 0.820
35 H 0.127 0.873
36 H 0.139 0.861
37 H 0.041 0.959
38 H 0.003 0.997
39 H 0.265 0.735
40 H 0.088 0.912
41 H 0.116 0.884
42 H 0.141 0.859
43 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.517 16.673 3.360 20.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 O -0.246 6.246
3 C 0.034 3.966
4 C -0.139 4.139
5 C -0.046 4.046
6 C -0.028 4.028
7 N -0.143 5.143
8 C -0.067 4.067
9 C -0.188 4.188
10 C 0.072 3.928
11 O -0.219 6.219
12 C -0.037 4.037
13 C 0.289 3.711
14 O -0.455 6.455
15 N -0.323 5.323
16 C 0.139 3.861
17 C -0.579 4.579
18 H 0.074 0.926
19 C -0.188 4.188
20 N -0.566 5.566
21 Si 0.781 3.219
22 H -0.186 1.186
23 H -0.210 1.210
24 H -0.207 1.207
25 C -0.017 4.017
26 C -0.082 4.082
27 C -0.071 4.071
28 N -0.167 5.167
29 H 0.126 0.874
30 H 0.088 0.912
31 H 0.090 0.910
32 H 0.177 0.823
33 H 0.184 0.816
34 H 0.197 0.803
35 H 0.145 0.855
36 H 0.156 0.844
37 H 0.059 0.941
38 H 0.021 0.979
39 H 0.074 0.926
40 H 0.106 0.894
41 H 0.134 0.866
42 H 0.159 0.841
43 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -11.754 18.434 3.399 22.125
hybrid contribution 0.075 -1.618 -0.830 1.820
sum -11.679 16.816 2.568 20.634
Atomic orbital electron populations
1.23378 0.76551 1.05440 1.02554 1.86277 1.23270 1.26001 1.89023
1.18271 0.89465 0.85571 1.03317 1.21073 1.01050 0.89091 1.02710
1.15657 0.92223 0.85904 1.10813 1.25681 0.92466 0.92473 0.92177
1.81300 1.09858 1.12027 1.11071 1.21172 0.90564 0.99891 0.95075
1.21353 1.02582 0.88910 1.05982 1.18992 0.88613 0.86615 0.98546
1.86258 1.18523 1.29147 1.87978 1.22933 0.78813 0.94840 1.07152
1.20722 0.82580 0.91066 0.76701 1.90738 1.63254 1.41109 1.50404
1.47981 1.04505 1.08318 1.71492 1.18843 0.92394 0.79157 0.95689
1.21740 1.39379 1.03123 0.93621 0.92567 1.25704 0.95491 0.96629
1.00998 1.70011 1.42371 1.11537 1.32639 0.85653 0.78198 0.77698
0.80375 1.18589 1.20999 1.20660 1.21674 0.97718 0.86915 0.95418
1.19871 0.99516 0.88986 0.99828 1.29104 0.92605 0.93596 0.91755
1.81292 1.11650 1.13819 1.09975 0.87367 0.91199 0.91002 0.82291
0.81636 0.80298 0.85520 0.84387 0.94121 0.97899 0.92627 0.89378
0.86597 0.84109 0.86278
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.20 9.81 113.37 1.11 1.31 16
2 O -0.33 -7.85 10.27 -79.43 -0.82 -8.66 16
3 C 0.08 1.58 6.69 22.53 0.15 1.74 16
4 C -0.12 -1.68 8.74 22.62 0.20 -1.48 16
5 C -0.04 -0.55 5.74 -21.30 -0.12 -0.67 16
6 C 0.29 4.73 15.33 88.33 1.35 6.09 16
7 N -0.47 -10.15 18.54 19.00 0.35 -9.80 16
8 C -0.05 -0.45 9.75 22.53 0.22 -0.23 16
9 C -0.17 -1.87 9.01 22.31 0.20 -1.67 16
10 C 0.12 2.35 6.71 22.68 0.15 2.50 16
11 O -0.31 -8.18 9.44 -65.36 -0.62 -8.80 16
12 C 0.04 0.79 3.77 71.24 0.27 1.06 16
13 C 0.50 16.94 7.75 87.66 0.68 17.62 16
14 O -0.58 -27.60 16.08 16.00 0.26 -27.34 16
15 N -0.59 -19.01 2.46 -826.15 -2.03 -21.04 16
16 C 0.26 11.89 5.16 85.63 0.44 12.33 16
17 C -0.54 -28.04 9.39 25.60 0.24 -27.80 16
18 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16
19 C 0.01 0.59 5.46 84.65 0.46 1.06 16
20 N -0.93 -52.62 13.29 21.45 0.28 -52.33 16
21 Si 0.96 42.66 29.54 68.60 2.03 44.69 16
22 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16
23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16
25 C 0.11 2.05 5.17 86.38 0.45 2.49 16
26 C -0.04 -0.55 6.03 28.79 0.17 -0.37 16
27 C 0.25 4.25 15.43 89.44 1.38 5.63 16
28 N -0.49 -11.65 18.54 20.01 0.37 -11.28 16
29 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16
30 H 0.07 0.70 7.65 -2.39 -0.02 0.68 16
31 H 0.07 0.69 7.67 -2.38 -0.02 0.67 16
32 H 0.16 1.62 6.28 -2.91 -0.02 1.60 16
33 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16
34 H 0.18 0.74 6.27 -2.91 -0.02 0.72 16
35 H 0.13 1.61 6.91 -2.39 -0.02 1.60 16
36 H 0.14 1.33 6.70 -2.39 -0.02 1.31 16
37 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16
38 H 0.00 0.16 7.42 -2.38 -0.02 0.14 16
39 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16
40 H 0.09 1.95 8.07 -2.39 -0.02 1.93 16
41 H 0.12 1.30 6.44 -2.39 -0.02 1.28 16
42 H 0.14 1.00 7.22 -2.39 -0.02 0.98 16
43 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16
Total: -1.00 -84.40 388.56 8.26 -76.14
By element:
Atomic # 1 Polarization: -2.26 SS G_CDS: 1.07 Total: -1.19 kcal
Atomic # 6 Polarization: 12.25 SS G_CDS: 7.36 Total: 19.60 kcal
Atomic # 7 Polarization: -93.43 SS G_CDS: -1.02 Total: -94.45 kcal
Atomic # 8 Polarization: -43.63 SS G_CDS: -1.18 Total: -44.80 kcal
Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal
Total: -84.40 8.26 -76.14 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000036772211.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.045 kcal
(2) G-P(sol) polarization free energy of solvation -84.403 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.357 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.258 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.145 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.099 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds