Wall clock time and date at job start Sat Apr 11 2020 06:51:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35870 * 117.00368 * 2 1
4 4 C 1.38844 * 119.93582 * 180.02562 * 3 2 1
5 5 C 1.37886 * 120.07140 * 180.25547 * 4 3 2
6 6 C 1.39426 * 119.93115 * 359.51754 * 5 4 3
7 7 C 1.48259 * 120.07014 * 180.23005 * 6 5 4
8 8 N 1.31378 * 126.51185 * 223.65747 * 7 6 5
9 9 N 1.39776 * 109.07878 * 179.90734 * 8 7 6
10 10 H 0.96998 * 125.15818 * 180.15571 * 9 8 7
11 11 C 1.34140 * 109.67964 * 0.36613 * 9 8 7
12 12 C 1.37985 * 107.88968 * 359.78869 * 11 9 8
13 13 C 1.47265 * 126.80569 * 180.02562 * 12 11 9
14 14 O 1.21629 * 119.99627 * 185.52283 * 13 12 11
15 15 N 1.34771 * 120.00497 * 5.52155 * 13 12 11
16 16 C 1.47070 * 136.05816 * 359.62969 * 15 13 12
17 17 C 1.53231 * 88.08407 * 207.20333 * 16 15 13
18 18 O 1.42905 * 114.19754 * 87.72740 * 17 16 15
19 19 C 1.50702 * 114.32597 * 220.46926 * 17 16 15
20 20 H 1.07997 * 119.99950 * 93.76511 * 19 17 16
21 21 C 1.37882 * 119.99958 * 273.76059 * 19 17 16
22 22 N 1.31509 * 120.00065 * 359.97438 * 21 19 17
23 23 Si 1.86795 * 119.99657 * 180.02562 * 21 19 17
24 24 H 1.48503 * 109.47432 * 0.02562 * 23 21 19
25 25 H 1.48498 * 109.47076 * 120.00319 * 23 21 19
26 26 H 1.48499 * 109.47218 * 239.99887 * 23 21 19
27 27 C 1.47071 * 136.05813 * 180.02562 * 15 13 12
28 28 C 1.39426 * 119.85800 * 0.46034 * 6 5 4
29 29 C 1.37889 * 119.93101 * 359.77148 * 28 6 5
30 30 H 1.08991 * 109.47234 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46946 * 299.99859 * 1 2 3
32 32 H 1.09003 * 109.47198 * 59.99292 * 1 2 3
33 33 H 1.08001 * 119.96159 * 359.97438 * 4 3 2
34 34 H 1.08007 * 120.03673 * 179.74595 * 5 4 3
35 35 H 1.07998 * 126.05227 * 179.80619 * 11 9 8
36 36 H 1.08993 * 113.46473 * 321.94010 * 16 15 13
37 37 H 1.08998 * 113.46351 * 92.37574 * 16 15 13
38 38 H 0.96701 * 113.99416 * 86.30407 * 18 17 16
39 39 H 0.96994 * 120.00100 * 179.97438 * 22 21 19
40 40 H 1.09002 * 113.46948 * 267.62227 * 27 15 13
41 41 H 1.08996 * 113.46564 * 38.00423 * 27 15 13
42 42 H 1.08005 * 120.03049 * 179.78790 * 28 6 5
43 43 H 1.07997 * 119.96517 * 180.02562 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2106 0.0000
4 6 3.4325 1.2816 -0.0005
5 6 4.0615 2.5086 0.0048
6 6 3.3036 3.6789 0.0005
7 6 3.9767 4.9999 0.0011
8 7 3.6484 6.0442 0.7275
9 7 4.5261 7.0938 0.4416
10 1 4.4962 7.9736 0.8489
11 6 5.4131 6.7012 -0.4850
12 6 5.1312 5.3910 -0.8134
13 6 5.8484 4.5519 -1.7882
14 8 5.4325 3.4408 -2.0564
15 7 6.9654 5.0150 -2.3832
16 6 7.7540 6.2555 -2.3357
17 6 8.2087 5.9606 -3.7690
18 8 7.3342 6.4707 -4.7776
19 6 9.6618 6.2602 -4.0334
20 1 10.4007 5.4786 -3.9359
21 6 10.0478 7.5321 -4.4000
22 7 9.1480 8.4836 -4.5194
23 14 11.8488 7.9032 -4.7284
24 1 12.6527 6.6707 -4.5284
25 1 12.0096 8.3770 -6.1265
26 1 12.3159 8.9568 -3.7920
27 6 7.9283 4.5051 -3.3710
28 6 1.9113 3.6042 0.0006
29 6 1.2883 2.3741 0.0002
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5140 -0.8899
33 1 4.0191 0.3747 -0.0005
34 1 5.1402 2.5632 0.0085
35 1 6.2074 7.3038 -0.9001
36 1 7.1439 7.1547 -2.2518
37 1 8.5653 6.2264 -1.6083
38 1 7.5133 7.3879 -5.0262
39 1 9.4196 9.3785 -4.7768
40 1 8.7866 4.0047 -2.9225
41 1 7.4661 3.9184 -4.1649
42 1 1.3215 4.5090 0.0008
43 1 0.2099 2.3156 -0.0002
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000186831320.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:51:00
Heat of formation + Delta-G solvation = 26.205940 kcal
Electronic energy + Delta-G solvation = -29255.737398 eV
Core-core repulsion = 25076.816856 eV
Total energy + Delta-G solvation = -4178.920543 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.04940 -39.97528 -39.30808 -37.47925 -37.01300 -34.03047 -32.36733 -32.23203
-31.07440 -30.60107 -29.39527 -28.21222 -27.35189 -25.43965 -25.18259 -23.20084
-22.69106 -22.12271 -20.24891 -19.71823 -18.90770 -18.16983 -17.67855 -17.09372
-16.13850 -16.04234 -15.82545 -15.60696 -15.29458 -15.02054 -14.73395 -14.48219
-14.29012 -14.09336 -13.70859 -13.48597 -13.26563 -13.02271 -12.70527 -12.55450
-12.34288 -12.13029 -11.97630 -11.74803 -11.60096 -11.29522 -11.12882 -10.98365
-10.96856 -10.70340 -10.50533 -10.28335 -9.72772 -9.66403 -9.22984 -8.87129
-8.79035 -8.68282 -8.39747 -7.94711 -7.77317 -6.45491 -4.55359 1.17031
1.49085 1.72160 2.39111 2.73504 3.09667 3.19309 3.19980 3.23637
3.60802 3.84052 3.97213 4.14546 4.44443 4.73083 4.77629 4.80130
4.91919 4.97056 5.00856 5.24647 5.27442 5.31339 5.41717 5.51167
5.60913 5.64294 5.76831 5.87057 6.09554 6.10186 6.23014 6.30630
6.38608 6.44555 6.52093 6.61650 6.66204 6.73250 6.80017 7.07835
7.15132 7.35136 7.55913 7.58551 7.76729 8.48320 8.55510 8.89031
9.16482 9.45731 10.61034
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.020387 B = 0.002552 C = 0.002364
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1373.088052 B =10970.006805 C =11842.510739
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.318 6.318
3 C 0.134 3.866
4 C -0.155 4.155
5 C -0.008 4.008
6 C -0.052 4.052
7 C 0.172 3.828
8 N -0.291 5.291
9 N -0.469 5.469
10 H 0.442 0.558
11 C 0.105 3.895
12 C -0.266 4.266
13 C 0.611 3.389
14 O -0.554 6.554
15 N -0.633 5.633
16 C 0.068 3.932
17 C 0.239 3.761
18 O -0.570 6.570
19 C -0.531 4.531
20 H 0.074 0.926
21 C 0.071 3.929
22 N -0.900 5.900
23 Si 0.908 3.092
24 H -0.269 1.269
25 H -0.281 1.281
26 H -0.281 1.281
27 C 0.111 3.889
28 C -0.050 4.050
29 C -0.219 4.219
30 H 0.097 0.903
31 H 0.054 0.946
32 H 0.055 0.945
33 H 0.132 0.868
34 H 0.135 0.865
35 H 0.194 0.806
36 H 0.062 0.938
37 H 0.082 0.918
38 H 0.393 0.607
39 H 0.273 0.727
40 H 0.085 0.915
41 H 0.067 0.933
42 H 0.125 0.875
43 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.481 -5.120 10.759 16.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.232 6.232
3 C 0.089 3.911
4 C -0.174 4.174
5 C -0.027 4.027
6 C -0.054 4.054
7 C 0.003 3.997
8 N -0.112 5.112
9 N -0.175 5.175
10 H 0.286 0.714
11 C -0.045 4.045
12 C -0.280 4.280
13 C 0.402 3.598
14 O -0.435 6.435
15 N -0.366 5.366
16 C -0.056 4.056
17 C 0.197 3.803
18 O -0.383 6.383
19 C -0.569 4.569
20 H 0.092 0.908
21 C -0.131 4.131
22 N -0.540 5.540
23 Si 0.735 3.265
24 H -0.194 1.194
25 H -0.206 1.206
26 H -0.207 1.207
27 C -0.011 4.011
28 C -0.069 4.069
29 C -0.237 4.237
30 H 0.116 0.884
31 H 0.073 0.927
32 H 0.074 0.926
33 H 0.150 0.850
34 H 0.153 0.847
35 H 0.211 0.789
36 H 0.080 0.920
37 H 0.100 0.900
38 H 0.249 0.751
39 H 0.083 0.917
40 H 0.103 0.897
41 H 0.086 0.914
42 H 0.143 0.857
43 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges -12.867 -5.889 11.575 18.282
hybrid contribution 1.481 1.546 -0.601 2.224
sum -11.386 -4.343 10.974 16.399
Atomic orbital electron populations
1.23035 0.78654 1.03708 1.01378 1.86057 1.21211 1.27222 1.88669
1.19132 0.92363 0.83917 0.95710 1.20290 0.91059 0.98570 1.07463
1.20952 1.00309 0.89885 0.91597 1.17502 0.92235 0.88770 1.06938
1.21705 0.92715 0.92479 0.92769 1.77260 1.14716 0.95526 1.23692
1.45921 1.24277 1.13879 1.33409 0.71421 1.23626 0.94479 0.95925
0.90421 1.21368 1.03596 0.95034 1.08050 1.16561 0.79140 0.85003
0.79146 1.90737 1.67475 1.20539 1.64737 1.49484 1.23334 1.20677
1.43062 1.24263 0.92329 0.85764 1.03214 1.19498 0.88695 0.88391
0.83679 1.86073 1.58518 1.35948 1.57759 1.21491 0.91773 0.96108
1.47513 0.90830 1.25075 0.98866 0.95701 0.93451 1.69263 1.33911
1.02993 1.47880 0.86269 0.83528 0.78536 0.78143 1.19371 1.20631
1.20718 1.23282 0.89477 0.99106 0.89270 1.20885 0.93062 0.97211
0.95734 1.21010 0.99760 0.91990 1.10989 0.88427 0.92715 0.92619
0.84967 0.84686 0.78918 0.91990 0.89955 0.75063 0.91660 0.89711
0.91439 0.85674 0.85437
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.21 9.81 101.05 0.99 1.20 16
2 O -0.32 -3.86 10.49 -19.33 -0.20 -4.07 16
3 C 0.13 1.82 6.69 -39.13 -0.26 1.56 16
4 C -0.16 -2.25 9.97 -39.49 -0.39 -2.65 16
5 C -0.01 -0.13 7.73 -39.27 -0.30 -0.43 16
6 C -0.05 -0.84 5.54 -104.89 -0.58 -1.42 16
7 C 0.17 2.91 6.86 -80.57 -0.55 2.35 16
8 N -0.29 -4.44 12.66 34.57 0.44 -4.00 16
9 N -0.47 -5.87 7.20 30.81 0.22 -5.65 16
10 H 0.44 3.71 8.96 -182.84 -1.64 2.07 16
11 C 0.10 1.51 11.20 -16.64 -0.19 1.33 16
12 C -0.27 -4.72 6.27 -102.95 -0.65 -5.37 16
13 C 0.61 12.58 7.91 -12.59 -0.10 12.48 16
14 O -0.55 -12.47 14.30 5.25 0.08 -12.40 16
15 N -0.63 -12.97 3.69 -186.73 -0.69 -13.66 16
16 C 0.07 1.34 6.71 -8.64 -0.06 1.28 16
17 C 0.24 5.48 1.57 -91.41 -0.14 5.34 16
18 O -0.57 -14.27 13.54 -35.23 -0.48 -14.75 16
19 C -0.53 -12.69 8.69 -34.44 -0.30 -12.99 16
20 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16
21 C 0.07 1.70 5.39 -17.82 -0.10 1.60 16
22 N -0.90 -21.72 11.01 55.43 0.61 -21.11 16
23 Si 0.91 18.72 29.54 -169.99 -5.02 13.70 16
24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16
25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16
26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16
27 C 0.11 2.35 8.03 -8.51 -0.07 2.28 16
28 C -0.05 -0.70 9.77 -39.27 -0.38 -1.08 16
29 C -0.22 -2.74 9.02 -39.48 -0.36 -3.10 16
30 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16
31 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16
32 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16
33 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16
34 H 0.14 2.26 6.94 -52.48 -0.36 1.89 16
35 H 0.19 2.52 5.11 -52.49 -0.27 2.25 16
36 H 0.06 1.17 5.94 -51.93 -0.31 0.87 16
37 H 0.08 1.54 8.10 -51.93 -0.42 1.11 16
38 H 0.39 9.90 6.32 45.56 0.29 10.19 16
39 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16
40 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16
41 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16
42 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16
43 H 0.13 1.23 6.28 -52.49 -0.33 0.90 16
LS Contribution 364.52 15.07 5.49 5.49
Total: -1.00 -30.22 364.52 -8.48 -38.70
By element:
Atomic # 1 Polarization: 20.85 SS G_CDS: -5.49 Total: 15.36 kcal
Atomic # 6 Polarization: 5.82 SS G_CDS: -3.44 Total: 2.38 kcal
Atomic # 7 Polarization: -45.00 SS G_CDS: 0.58 Total: -44.42 kcal
Atomic # 8 Polarization: -30.61 SS G_CDS: -0.60 Total: -31.22 kcal
Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -30.22 -8.48 -38.70 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186831320.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.910 kcal
(2) G-P(sol) polarization free energy of solvation -30.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds