Wall clock time and date at job start Sat Apr 11 2020 06:50:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35870 * 117.00368 * 2 1
4 4 C 1.38844 * 119.93582 * 180.02562 * 3 2 1
5 5 C 1.37886 * 120.07140 * 180.25547 * 4 3 2
6 6 C 1.39426 * 119.93115 * 359.51754 * 5 4 3
7 7 C 1.48259 * 120.07014 * 180.23005 * 6 5 4
8 8 N 1.31378 * 126.51185 * 223.65747 * 7 6 5
9 9 N 1.39776 * 109.07878 * 179.90734 * 8 7 6
10 10 H 0.96998 * 125.15818 * 180.15571 * 9 8 7
11 11 C 1.34140 * 109.67964 * 0.36613 * 9 8 7
12 12 C 1.37985 * 107.88968 * 359.78869 * 11 9 8
13 13 C 1.47265 * 126.80569 * 180.02562 * 12 11 9
14 14 O 1.21629 * 119.99627 * 185.52283 * 13 12 11
15 15 N 1.34771 * 120.00497 * 5.52155 * 13 12 11
16 16 C 1.47070 * 136.05816 * 359.62969 * 15 13 12
17 17 C 1.53231 * 88.08407 * 207.20333 * 16 15 13
18 18 O 1.42905 * 114.19754 * 87.72740 * 17 16 15
19 19 C 1.50702 * 114.32597 * 220.46926 * 17 16 15
20 20 H 1.07997 * 119.99950 * 93.76511 * 19 17 16
21 21 C 1.37882 * 119.99958 * 273.76059 * 19 17 16
22 22 N 1.31509 * 120.00065 * 359.97438 * 21 19 17
23 23 Si 1.86795 * 119.99657 * 180.02562 * 21 19 17
24 24 H 1.48503 * 109.47432 * 0.02562 * 23 21 19
25 25 H 1.48498 * 109.47076 * 120.00319 * 23 21 19
26 26 H 1.48499 * 109.47218 * 239.99887 * 23 21 19
27 27 C 1.47071 * 136.05813 * 180.02562 * 15 13 12
28 28 C 1.39426 * 119.85800 * 0.46034 * 6 5 4
29 29 C 1.37889 * 119.93101 * 359.77148 * 28 6 5
30 30 H 1.08991 * 109.47234 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.46946 * 299.99859 * 1 2 3
32 32 H 1.09003 * 109.47198 * 59.99292 * 1 2 3
33 33 H 1.08001 * 119.96159 * 359.97438 * 4 3 2
34 34 H 1.08007 * 120.03673 * 179.74595 * 5 4 3
35 35 H 1.07998 * 126.05227 * 179.80619 * 11 9 8
36 36 H 1.08993 * 113.46473 * 321.94010 * 16 15 13
37 37 H 1.08998 * 113.46351 * 92.37574 * 16 15 13
38 38 H 0.96701 * 113.99416 * 86.30407 * 18 17 16
39 39 H 0.96994 * 120.00100 * 179.97438 * 22 21 19
40 40 H 1.09002 * 113.46948 * 267.62227 * 27 15 13
41 41 H 1.08996 * 113.46564 * 38.00423 * 27 15 13
42 42 H 1.08005 * 120.03049 * 179.78790 * 28 6 5
43 43 H 1.07997 * 119.96517 * 180.02562 * 29 28 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2106 0.0000
4 6 3.4325 1.2816 -0.0005
5 6 4.0615 2.5086 0.0048
6 6 3.3036 3.6789 0.0005
7 6 3.9767 4.9999 0.0011
8 7 3.6484 6.0442 0.7275
9 7 4.5261 7.0938 0.4416
10 1 4.4962 7.9736 0.8489
11 6 5.4131 6.7012 -0.4850
12 6 5.1312 5.3910 -0.8134
13 6 5.8484 4.5519 -1.7882
14 8 5.4325 3.4408 -2.0564
15 7 6.9654 5.0150 -2.3832
16 6 7.7540 6.2555 -2.3357
17 6 8.2087 5.9606 -3.7690
18 8 7.3342 6.4707 -4.7776
19 6 9.6618 6.2602 -4.0334
20 1 10.4007 5.4786 -3.9359
21 6 10.0478 7.5321 -4.4000
22 7 9.1480 8.4836 -4.5194
23 14 11.8488 7.9032 -4.7284
24 1 12.6527 6.6707 -4.5284
25 1 12.0096 8.3770 -6.1265
26 1 12.3159 8.9568 -3.7920
27 6 7.9283 4.5051 -3.3710
28 6 1.9113 3.6042 0.0006
29 6 1.2883 2.3741 0.0002
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5140 -0.8899
33 1 4.0191 0.3747 -0.0005
34 1 5.1402 2.5632 0.0085
35 1 6.2074 7.3038 -0.9001
36 1 7.1439 7.1547 -2.2518
37 1 8.5653 6.2264 -1.6083
38 1 7.5133 7.3879 -5.0262
39 1 9.4196 9.3785 -4.7768
40 1 8.7866 4.0047 -2.9225
41 1 7.4661 3.9184 -4.1649
42 1 1.3215 4.5090 0.0008
43 1 0.2099 2.3156 -0.0002
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000186831320.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:59
Heat of formation + Delta-G solvation = 4.789734 kcal
Electronic energy + Delta-G solvation = -29256.666075 eV
Core-core repulsion = 25076.816856 eV
Total energy + Delta-G solvation = -4179.849219 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.136 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.27912 -41.00514 -40.87200 -38.83444 -38.30434 -35.83418 -34.08533 -33.49651
-32.19476 -31.92831 -30.48340 -29.77036 -28.10874 -27.16307 -26.81522 -24.29115
-23.95958 -23.30977 -21.67412 -21.04076 -20.32240 -19.39440 -19.12009 -18.56750
-17.55702 -17.09625 -17.08037 -16.73930 -16.62646 -16.51197 -16.20329 -15.97008
-15.55405 -15.49507 -14.87373 -14.75430 -14.51577 -14.37109 -14.19276 -13.93950
-13.68463 -13.52372 -13.36975 -13.05795 -12.78950 -12.78326 -12.59685 -12.28258
-12.20544 -12.07560 -12.03354 -11.74469 -11.36232 -10.89498 -10.83364 -10.61225
-10.18889 -9.96897 -9.93605 -9.44062 -8.98464 -8.24757 -6.40489 0.03880
0.40825 0.47648 1.15485 1.47318 1.53350 1.62405 1.65820 2.07455
2.35680 2.39890 2.45555 2.79228 2.97889 3.23876 3.57537 3.70008
3.83043 3.93617 3.98910 4.14379 4.20587 4.27757 4.35652 4.40505
4.43553 4.54137 4.56628 4.68838 4.71285 4.76220 4.83969 4.90356
4.97168 5.03958 5.11459 5.25061 5.29907 5.39974 5.56513 5.72134
5.76865 5.95593 6.15643 6.40089 6.42569 6.65419 6.95825 7.29007
7.34876 7.54494 8.81310
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.020387 B = 0.002552 C = 0.002364
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1373.088052 B =10970.006805 C =11842.510739
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 O -0.332 6.332
3 C 0.135 3.865
4 C -0.169 4.169
5 C -0.022 4.022
6 C -0.078 4.078
7 C 0.165 3.835
8 N -0.294 5.294
9 N -0.445 5.445
10 H 0.462 0.538
11 C 0.129 3.871
12 C -0.304 4.304
13 C 0.606 3.394
14 O -0.583 6.583
15 N -0.635 5.635
16 C 0.083 3.917
17 C 0.219 3.781
18 O -0.586 6.586
19 C -0.548 4.548
20 H 0.073 0.927
21 C 0.035 3.965
22 N -0.915 5.915
23 Si 0.967 3.033
24 H -0.269 1.269
25 H -0.285 1.285
26 H -0.276 1.276
27 C 0.110 3.890
28 C -0.052 4.052
29 C -0.211 4.211
30 H 0.121 0.879
31 H 0.070 0.930
32 H 0.064 0.936
33 H 0.138 0.862
34 H 0.116 0.884
35 H 0.211 0.789
36 H 0.072 0.928
37 H 0.097 0.903
38 H 0.389 0.611
39 H 0.276 0.724
40 H 0.102 0.898
41 H 0.050 0.950
42 H 0.139 0.861
43 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.389 -4.352 11.904 17.724
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 O -0.246 6.246
3 C 0.089 3.911
4 C -0.188 4.188
5 C -0.042 4.042
6 C -0.080 4.080
7 C -0.003 4.003
8 N -0.115 5.115
9 N -0.153 5.153
10 H 0.311 0.689
11 C -0.023 4.023
12 C -0.318 4.318
13 C 0.398 3.602
14 O -0.465 6.465
15 N -0.368 5.368
16 C -0.040 4.040
17 C 0.177 3.823
18 O -0.399 6.399
19 C -0.586 4.586
20 H 0.091 0.909
21 C -0.166 4.166
22 N -0.557 5.557
23 Si 0.792 3.208
24 H -0.193 1.193
25 H -0.211 1.211
26 H -0.201 1.201
27 C -0.013 4.013
28 C -0.072 4.072
29 C -0.229 4.229
30 H 0.139 0.861
31 H 0.088 0.912
32 H 0.082 0.918
33 H 0.156 0.844
34 H 0.134 0.866
35 H 0.227 0.773
36 H 0.090 0.910
37 H 0.115 0.885
38 H 0.245 0.755
39 H 0.086 0.914
40 H 0.120 0.880
41 H 0.069 0.931
42 H 0.157 0.843
43 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -13.799 -5.100 12.757 19.472
hybrid contribution 1.670 1.257 -0.958 2.299
sum -12.129 -3.842 11.799 17.352
Atomic orbital electron populations
1.23403 0.76205 1.05765 1.02493 1.86049 1.23740 1.26476 1.88292
1.19203 0.92126 0.84942 0.94873 1.20415 0.92185 0.98295 1.07907
1.20839 0.99553 0.90798 0.93019 1.17704 0.93345 0.88560 1.08408
1.21844 0.92613 0.93128 0.92753 1.77228 1.15211 0.95671 1.23421
1.45940 1.22828 1.14274 1.32216 0.68937 1.23696 0.94254 0.94726
0.89600 1.21249 1.05049 0.96314 1.09232 1.17002 0.78861 0.85060
0.79272 1.90709 1.68097 1.21910 1.65823 1.49493 1.23478 1.20812
1.43011 1.24081 0.92623 0.85875 1.01393 1.19756 0.88350 0.89392
0.84753 1.86061 1.59227 1.35755 1.58880 1.21671 0.92243 0.96430
1.48216 0.90896 1.25694 1.02110 0.95546 0.93233 1.69309 1.35142
1.03238 1.47969 0.85365 0.79563 0.78250 0.77580 1.19286 1.21092
1.20129 1.23299 0.90268 0.98291 0.89404 1.21094 0.92299 0.98446
0.95319 1.21332 1.01361 0.90928 1.09288 0.86112 0.91189 0.91782
0.84415 0.86572 0.77297 0.90970 0.88467 0.75521 0.91383 0.87989
0.93138 0.84305 0.82112
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.20 9.81 113.37 1.11 1.31 16
2 O -0.33 -7.57 10.49 -92.08 -0.97 -8.54 16
3 C 0.13 3.54 6.69 22.56 0.15 3.69 16
4 C -0.17 -5.05 9.97 22.33 0.22 -4.83 16
5 C -0.02 -0.75 7.73 22.47 0.17 -0.58 16
6 C -0.08 -2.55 5.54 -20.04 -0.11 -2.66 16
7 C 0.17 5.54 6.86 44.06 0.30 5.85 16
8 N -0.29 -8.56 12.66 -44.54 -0.56 -9.13 16
9 N -0.45 -10.15 7.20 -56.42 -0.41 -10.56 16
10 H 0.46 6.37 8.96 -213.53 -1.91 4.46 16
11 C 0.13 3.51 11.20 84.28 0.94 4.46 16
12 C -0.30 -10.74 6.27 -18.78 -0.12 -10.86 16
13 C 0.61 25.44 7.91 86.62 0.69 26.12 16
14 O -0.58 -27.28 14.30 -4.12 -0.06 -27.34 16
15 N -0.64 -26.21 3.69 -863.42 -3.19 -29.40 16
16 C 0.08 3.23 6.71 83.09 0.56 3.78 16
17 C 0.22 10.05 1.57 -11.30 -0.02 10.03 16
18 O -0.59 -29.75 13.54 -148.98 -2.02 -31.77 16
19 C -0.55 -26.01 8.69 25.60 0.22 -25.79 16
20 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16
21 C 0.03 1.62 5.39 84.66 0.46 2.07 16
22 N -0.92 -43.64 11.01 21.45 0.24 -43.40 16
23 Si 0.97 37.74 29.54 68.60 2.03 39.76 16
24 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16
25 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16
26 H -0.28 -10.46 7.11 99.48 0.71 -9.76 16
27 C 0.11 4.73 8.03 83.17 0.67 5.40 16
28 C -0.05 -1.42 9.77 22.47 0.22 -1.20 16
29 C -0.21 -4.92 9.02 22.33 0.20 -4.71 16
30 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16
31 H 0.07 0.70 7.65 -2.39 -0.02 0.68 16
32 H 0.06 0.73 7.65 -2.39 -0.02 0.71 16
33 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16
34 H 0.12 4.20 6.94 -2.91 -0.02 4.18 16
35 H 0.21 4.97 5.11 -2.91 -0.01 4.96 16
36 H 0.07 2.64 5.94 -2.39 -0.01 2.62 16
37 H 0.10 3.48 8.10 -2.39 -0.02 3.47 16
38 H 0.39 19.84 6.32 -74.06 -0.47 19.38 16
39 H 0.28 12.44 8.31 -92.71 -0.77 11.67 16
40 H 0.10 3.95 8.10 -2.39 -0.02 3.93 16
41 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16
42 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16
43 H 0.16 2.56 6.28 -2.91 -0.02 2.55 16
Total: -1.00 -65.49 364.52 -0.55 -66.04
By element:
Atomic # 1 Polarization: 43.53 SS G_CDS: -1.28 Total: 42.24 kcal
Atomic # 6 Polarization: 6.41 SS G_CDS: 5.67 Total: 12.08 kcal
Atomic # 7 Polarization: -88.56 SS G_CDS: -3.92 Total: -92.48 kcal
Atomic # 8 Polarization: -64.61 SS G_CDS: -3.04 Total: -67.65 kcal
Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.76 kcal
Total: -65.49 -0.55 -66.04 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186831320.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.834 kcal
(2) G-P(sol) polarization free energy of solvation -65.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.044 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds