Wall clock time and date at job start Sat Apr 11 2020 06:49:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46906 * 110.99573 * 2 1
4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1
5 5 C 1.38369 * 119.84764 * 269.72217 * 4 3 2
6 6 C 1.37940 * 120.14907 * 179.76485 * 5 4 3
7 7 C 1.39633 * 119.85109 * 0.53786 * 6 5 4
8 8 C 1.43200 * 120.15391 * 179.69765 * 7 6 5
9 9 N 7.46447 * 81.52352 * 307.00351 * 2 1 3
10 10 C 1.39635 * 119.69518 * 359.71956 * 7 6 5
11 11 C 1.37953 * 119.84776 * 359.97438 * 10 7 6
12 12 C 1.46898 * 111.00283 * 123.95141 * 2 1 3
13 13 N 1.46499 * 109.46781 * 66.05035 * 12 2 1
14 14 N 1.40168 * 126.14746 * 90.02742 * 13 12 2
15 15 C 1.32240 * 107.75672 * 180.02562 * 14 13 12
16 16 C 1.40120 * 125.92413 * 179.97438 * 15 14 13
17 17 H 1.07997 * 120.00459 * 179.97438 * 16 15 14
18 18 C 1.40043 * 119.99752 * 359.97426 * 16 15 14
19 19 N 1.30790 * 120.00316 * 359.97438 * 18 16 15
20 20 Si 1.86796 * 119.99694 * 179.97438 * 18 16 15
21 21 H 1.48500 * 109.47594 * 90.00076 * 20 18 16
22 22 H 1.48503 * 109.47166 * 210.00020 * 20 18 16
23 23 H 1.48500 * 109.47459 * 329.99711 * 20 18 16
24 24 N 1.38494 * 108.14963 * 359.97438 * 15 14 13
25 25 C 1.46504 * 125.83458 * 180.02562 * 24 15 14
26 26 C 1.34726 * 108.33098 * 359.74129 * 24 15 14
27 27 S 1.71203 * 125.97399 * 180.26261 * 26 24 15
28 28 H 1.09004 * 109.47457 * 60.00221 * 1 2 3
29 29 H 1.09001 * 109.46615 * 179.97438 * 1 2 3
30 30 H 1.08990 * 109.47358 * 299.99539 * 1 2 3
31 31 H 1.08993 * 109.47164 * 53.95342 * 3 2 1
32 32 H 1.08996 * 109.46920 * 173.95376 * 3 2 1
33 33 H 1.07997 * 119.91932 * 0.02562 * 5 4 3
34 34 H 1.08000 * 120.07525 * 180.25489 * 6 5 4
35 35 H 1.07996 * 120.07719 * 179.97438 * 10 7 6
36 36 H 1.07993 * 119.92318 * 179.97438 * 11 10 7
37 37 H 1.08999 * 109.46988 * 186.04548 * 12 2 1
38 38 H 1.08996 * 109.46945 * 306.05035 * 12 2 1
39 39 H 0.97002 * 120.00587 * 180.02562 * 19 18 16
40 40 H 1.09003 * 109.46870 * 90.00430 * 25 24 15
41 41 H 1.08996 * 109.47433 * 210.00190 * 25 24 15
42 42 H 1.09002 * 109.47294 * 330.00291 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6368 2.0472 -1.2985
5 6 2.4996 1.9678 -2.3773
6 6 2.1753 2.5798 -3.5702
7 6 0.9785 3.2900 -3.6842
8 6 0.6385 3.9333 -4.9176
9 7 0.3687 4.4435 -5.8960
10 6 0.1150 3.3706 -2.5898
11 6 0.4488 2.7484 -1.4047
12 6 1.9955 -0.7659 1.1376
13 7 1.6471 -2.1798 0.9774
14 7 2.4164 -3.1520 0.3233
15 6 1.7616 -4.2987 0.3934
16 6 2.1881 -5.5228 -0.1387
17 1 1.5746 -6.4042 -0.0249
18 6 3.4100 -5.6031 -0.8181
19 7 4.1529 -4.5356 -0.9564
20 14 3.9790 -7.2351 -1.5269
21 1 3.4798 -7.3713 -2.9188
22 1 5.4632 -7.2845 -1.5263
23 1 3.4464 -8.3470 -0.6990
24 7 0.5812 -4.0800 1.0839
25 6 -0.4367 -5.0901 1.3841
26 6 0.5318 -2.7810 1.4379
27 16 -0.7294 -2.0249 2.3147
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3632 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8899
31 1 1.5610 1.9274 0.8308
32 1 3.0796 1.3445 0.1082
33 1 3.4270 1.4219 -2.2863
34 1 2.8477 2.5136 -4.4128
35 1 -0.8120 3.9186 -2.6710
36 1 -0.2179 2.8103 -0.5574
37 1 3.0798 -0.6610 1.1755
38 1 1.5611 -0.3872 2.0627
39 1 4.9991 -4.5911 -1.4274
40 1 -0.2123 -5.5582 2.3426
41 1 -1.4166 -4.6154 1.4322
42 1 -0.4383 -5.8483 0.6010
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000794618884.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:28
Heat of formation + Delta-G solvation = 147.241200 kcal
Electronic energy + Delta-G solvation = -26526.515160 eV
Core-core repulsion = 22827.888722 eV
Total energy + Delta-G solvation = -3698.626438 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 343.116 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.95851 -39.84765 -37.49781 -36.42745 -34.33213 -33.90721 -32.01433 -31.29586
-30.55838 -28.16350 -27.43241 -26.57907 -25.61459 -23.35019 -22.89283 -21.74057
-21.01479 -20.86287 -19.08944 -17.84338 -16.82903 -16.18385 -15.92104 -15.87159
-15.67346 -15.12791 -14.80060 -14.75950 -14.59431 -14.31669 -14.13288 -13.73238
-13.56466 -13.18602 -13.00671 -12.89298 -12.45894 -12.26489 -12.22674 -12.02679
-11.84300 -11.68259 -11.56624 -11.43853 -11.27918 -11.13468 -11.08612 -10.68608
-10.57166 -10.10442 -9.59599 -9.31064 -9.18386 -8.96987 -8.89868 -8.21361
-7.07986 -6.85691 -6.70698 -5.17468 0.56069 1.17846 2.23028 2.47569
2.48677 2.75006 2.77072 2.89458 2.92916 3.28261 3.49730 3.61614
3.65976 3.71125 4.02498 4.30993 4.60697 4.64791 4.69069 4.81451
5.12294 5.14565 5.16192 5.39147 5.41445 5.49400 5.53676 5.62312
5.79970 5.80648 5.86813 6.00552 6.02032 6.05832 6.10520 6.22364
6.39711 6.46967 6.55001 6.63032 6.77048 6.94870 7.05070 7.12491
7.28682 7.52442 7.73074 8.18985 8.31740 9.09923 9.90024
Molecular weight = 343.12amu
Principal moments of inertia in cm(-1)
A = 0.010350 B = 0.003131 C = 0.002612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2704.726953 B = 8940.004583 C =10715.466202
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.546 5.546
3 C 0.093 3.907
4 C -0.038 4.038
5 C -0.096 4.096
6 C -0.070 4.070
7 C -0.038 4.038
8 C 0.260 3.740
9 N -0.427 5.427
10 C -0.072 4.072
11 C -0.112 4.112
12 C 0.326 3.674
13 N -0.370 5.370
14 N -0.330 5.330
15 C 0.371 3.629
16 C -0.437 4.437
17 H 0.097 0.903
18 C 0.076 3.924
19 N -0.735 5.735
20 Si 0.928 3.072
21 H -0.266 1.266
22 H -0.273 1.273
23 H -0.259 1.259
24 N -0.513 5.513
25 C 0.100 3.900
26 C 0.464 3.536
27 S -0.714 6.714
28 H 0.059 0.941
29 H 0.078 0.922
30 H 0.040 0.960
31 H 0.052 0.948
32 H 0.089 0.911
33 H 0.137 0.863
34 H 0.131 0.869
35 H 0.131 0.869
36 H 0.133 0.867
37 H 0.104 0.896
38 H 0.076 0.924
39 H 0.286 0.714
40 H 0.067 0.933
41 H 0.089 0.911
42 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.576 7.268 -1.020 7.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.272 5.272
3 C -0.035 4.035
4 C -0.040 4.040
5 C -0.114 4.114
6 C -0.091 4.091
7 C -0.042 4.042
8 C -0.055 4.055
9 N -0.102 5.102
10 C -0.092 4.092
11 C -0.131 4.131
12 C 0.114 3.886
13 N -0.155 5.155
14 N -0.161 5.161
15 C 0.123 3.877
16 C -0.479 4.479
17 H 0.115 0.885
18 C -0.150 4.150
19 N -0.359 5.359
20 Si 0.751 3.249
21 H -0.191 1.191
22 H -0.198 1.198
23 H -0.183 1.183
24 N -0.214 5.214
25 C -0.043 4.043
26 C 0.095 3.905
27 S -0.590 6.590
28 H 0.077 0.923
29 H 0.096 0.904
30 H 0.059 0.941
31 H 0.070 0.930
32 H 0.108 0.892
33 H 0.155 0.845
34 H 0.149 0.851
35 H 0.149 0.851
36 H 0.151 0.849
37 H 0.122 0.878
38 H 0.094 0.906
39 H 0.097 0.903
40 H 0.085 0.915
41 H 0.108 0.892
42 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 0.686 8.913 -2.861 9.386
hybrid contribution 0.062 -1.393 0.462 1.469
sum 0.747 7.519 -2.399 7.928
Atomic orbital electron populations
1.22699 0.85524 1.03964 1.00072 1.61903 1.09690 1.11803 1.43762
1.21018 1.01028 0.87924 0.93526 1.20005 0.93779 0.94516 0.95666
1.21040 1.00475 0.98262 0.91650 1.21168 0.94645 0.95009 0.98262
1.16001 0.97510 1.02456 0.88190 1.25789 0.93500 0.93288 0.92950
1.81240 1.08139 1.09832 1.11023 1.21105 0.98418 0.98113 0.91584
1.21064 0.96602 0.97559 0.97841 1.21678 0.99919 0.74725 0.92290
1.49121 1.14527 1.09161 1.42712 1.79447 1.14942 0.93423 1.28277
1.21343 0.80218 0.95688 0.90500 1.18349 1.04845 0.91918 1.32757
0.88508 1.25824 0.95504 0.98971 0.94732 1.69865 1.09680 1.29049
1.27272 0.85972 0.78538 0.80512 0.79895 1.19068 1.19784 1.18322
1.45980 1.20230 1.07569 1.47621 1.21767 0.90848 0.90055 1.01664
1.22923 0.90983 0.85243 0.91370 1.92751 1.35043 1.73380 1.57839
0.92269 0.90366 0.94135 0.93014 0.89232 0.84514 0.85061 0.85133
0.84933 0.87828 0.90593 0.90323 0.91470 0.89213 0.89719
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.41 7.94 60.07 0.48 0.89 16
2 N -0.55 -8.50 4.89 -248.31 -1.21 -9.72 16
3 C 0.09 1.04 5.11 -4.97 -0.03 1.01 16
4 C -0.04 -0.40 4.89 -104.53 -0.51 -0.91 16
5 C -0.10 -0.96 9.68 -39.64 -0.38 -1.35 16
6 C -0.07 -0.67 9.76 -39.17 -0.38 -1.05 16
7 C -0.04 -0.38 5.73 -106.93 -0.61 -0.99 16
8 C 0.26 2.97 15.33 -22.47 -0.34 2.63 16
9 N -0.43 -5.80 18.54 41.84 0.78 -5.02 16
10 C -0.07 -0.65 9.76 -39.16 -0.38 -1.03 16
11 C -0.11 -1.06 7.94 -39.64 -0.31 -1.38 16
12 C 0.33 5.66 5.98 -63.32 -0.38 5.29 16
13 N -0.37 -8.05 3.57 -65.05 -0.23 -8.29 16
14 N -0.33 -8.07 10.77 31.21 0.34 -7.74 16
15 C 0.37 8.84 7.50 -155.28 -1.16 7.68 16
16 C -0.44 -9.88 8.98 -38.20 -0.34 -10.22 16
17 H 0.10 1.96 7.11 -52.49 -0.37 1.59 16
18 C 0.08 1.67 5.50 -17.32 -0.10 1.58 16
19 N -0.73 -17.17 11.90 55.55 0.66 -16.51 16
20 Si 0.93 16.16 29.56 -169.99 -5.02 11.13 16
21 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16
22 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16
23 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16
24 N -0.51 -11.17 3.17 -124.65 -0.39 -11.57 16
25 C 0.10 1.71 10.64 59.85 0.64 2.35 16
26 C 0.46 10.41 6.59 -86.93 -0.57 9.83 16
27 S -0.71 -16.21 27.23 -107.50 -2.93 -19.14 16
28 H 0.06 0.87 6.16 -51.93 -0.32 0.55 16
29 H 0.08 1.60 5.35 -51.93 -0.28 1.32 16
30 H 0.04 0.65 8.04 -51.93 -0.42 0.23 16
31 H 0.05 0.52 8.06 -51.93 -0.42 0.10 16
32 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16
33 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16
34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16
35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16
36 H 0.13 1.11 8.02 -52.49 -0.42 0.69 16
37 H 0.10 1.66 7.93 -51.93 -0.41 1.25 16
38 H 0.08 1.30 7.61 -51.93 -0.40 0.90 16
39 H 0.29 6.04 8.30 -40.82 -0.34 5.71 16
40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
41 H 0.09 1.52 7.62 -51.93 -0.40 1.12 16
42 H 0.08 1.28 7.32 -51.93 -0.38 0.90 16
LS Contribution 373.99 15.07 5.64 5.64
Total: -1.00 -30.11 373.99 -11.83 -41.94
By element:
Atomic # 1 Polarization: 9.98 SS G_CDS: -5.05 Total: 4.93 kcal
Atomic # 6 Polarization: 18.72 SS G_CDS: -4.40 Total: 14.33 kcal
Atomic # 7 Polarization: -58.77 SS G_CDS: -0.07 Total: -58.84 kcal
Atomic # 14 Polarization: 16.16 SS G_CDS: -5.02 Total: 11.13 kcal
Atomic # 16 Polarization: -16.21 SS G_CDS: -2.93 Total: -19.14 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -30.11 -11.83 -41.94 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000794618884.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 189.183 kcal
(2) G-P(sol) polarization free energy of solvation -30.113 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.070 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.829 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) 147.241 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds