Wall clock time and date at job start Sat Apr 11 2020 06:49:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46906 * 110.99573 * 2 1
4 4 C 1.50701 * 109.46965 * 293.95399 * 3 2 1
5 5 C 1.38369 * 119.84764 * 269.72217 * 4 3 2
6 6 C 1.37940 * 120.14907 * 179.76485 * 5 4 3
7 7 C 1.39633 * 119.85109 * 0.53786 * 6 5 4
8 8 C 1.43200 * 120.15391 * 179.69765 * 7 6 5
9 9 N 7.46447 * 81.52352 * 307.00351 * 2 1 3
10 10 C 1.39635 * 119.69518 * 359.71956 * 7 6 5
11 11 C 1.37953 * 119.84776 * 359.97438 * 10 7 6
12 12 C 1.46898 * 111.00283 * 123.95141 * 2 1 3
13 13 N 1.46499 * 109.46781 * 66.05035 * 12 2 1
14 14 N 1.40168 * 126.14746 * 90.02742 * 13 12 2
15 15 C 1.32240 * 107.75672 * 180.02562 * 14 13 12
16 16 C 1.40120 * 125.92413 * 179.97438 * 15 14 13
17 17 H 1.07997 * 120.00459 * 179.97438 * 16 15 14
18 18 C 1.40043 * 119.99752 * 359.97426 * 16 15 14
19 19 N 1.30790 * 120.00316 * 359.97438 * 18 16 15
20 20 Si 1.86796 * 119.99694 * 179.97438 * 18 16 15
21 21 H 1.48500 * 109.47594 * 90.00076 * 20 18 16
22 22 H 1.48503 * 109.47166 * 210.00020 * 20 18 16
23 23 H 1.48500 * 109.47459 * 329.99711 * 20 18 16
24 24 N 1.38494 * 108.14963 * 359.97438 * 15 14 13
25 25 C 1.46504 * 125.83458 * 180.02562 * 24 15 14
26 26 C 1.34726 * 108.33098 * 359.74129 * 24 15 14
27 27 S 1.71203 * 125.97399 * 180.26261 * 26 24 15
28 28 H 1.09004 * 109.47457 * 60.00221 * 1 2 3
29 29 H 1.09001 * 109.46615 * 179.97438 * 1 2 3
30 30 H 1.08990 * 109.47358 * 299.99539 * 1 2 3
31 31 H 1.08993 * 109.47164 * 53.95342 * 3 2 1
32 32 H 1.08996 * 109.46920 * 173.95376 * 3 2 1
33 33 H 1.07997 * 119.91932 * 0.02562 * 5 4 3
34 34 H 1.08000 * 120.07525 * 180.25489 * 6 5 4
35 35 H 1.07996 * 120.07719 * 179.97438 * 10 7 6
36 36 H 1.07993 * 119.92318 * 179.97438 * 11 10 7
37 37 H 1.08999 * 109.46988 * 186.04548 * 12 2 1
38 38 H 1.08996 * 109.46945 * 306.05035 * 12 2 1
39 39 H 0.97002 * 120.00587 * 180.02562 * 19 18 16
40 40 H 1.09003 * 109.46870 * 90.00430 * 25 24 15
41 41 H 1.08996 * 109.47433 * 210.00190 * 25 24 15
42 42 H 1.09002 * 109.47294 * 330.00291 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6368 2.0472 -1.2985
5 6 2.4996 1.9678 -2.3773
6 6 2.1753 2.5798 -3.5702
7 6 0.9785 3.2900 -3.6842
8 6 0.6385 3.9333 -4.9176
9 7 0.3687 4.4435 -5.8960
10 6 0.1150 3.3706 -2.5898
11 6 0.4488 2.7484 -1.4047
12 6 1.9955 -0.7659 1.1376
13 7 1.6471 -2.1798 0.9774
14 7 2.4164 -3.1520 0.3233
15 6 1.7616 -4.2987 0.3934
16 6 2.1881 -5.5228 -0.1387
17 1 1.5746 -6.4042 -0.0249
18 6 3.4100 -5.6031 -0.8181
19 7 4.1529 -4.5356 -0.9564
20 14 3.9790 -7.2351 -1.5269
21 1 3.4798 -7.3713 -2.9188
22 1 5.4632 -7.2845 -1.5263
23 1 3.4464 -8.3470 -0.6990
24 7 0.5812 -4.0800 1.0839
25 6 -0.4367 -5.0901 1.3841
26 6 0.5318 -2.7810 1.4379
27 16 -0.7294 -2.0249 2.3147
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3632 -1.0277 -0.0005
30 1 -0.3633 0.5137 0.8899
31 1 1.5610 1.9274 0.8308
32 1 3.0796 1.3445 0.1082
33 1 3.4270 1.4219 -2.2863
34 1 2.8477 2.5136 -4.4128
35 1 -0.8120 3.9186 -2.6710
36 1 -0.2179 2.8103 -0.5574
37 1 3.0798 -0.6610 1.1755
38 1 1.5611 -0.3872 2.0627
39 1 4.9991 -4.5911 -1.4274
40 1 -0.2123 -5.5582 2.3426
41 1 -1.4166 -4.6154 1.4322
42 1 -0.4383 -5.8483 0.6010
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000794618884.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:27
Heat of formation + Delta-G solvation = 132.427392 kcal
Electronic energy + Delta-G solvation = -26527.157535 eV
Core-core repulsion = 22827.888722 eV
Total energy + Delta-G solvation = -3699.268813 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 343.116 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-42.61701 -40.67866 -38.65322 -37.45255 -35.88954 -35.46981 -33.11107 -32.12385
-32.00794 -29.63106 -28.59477 -28.14323 -26.94578 -24.60739 -23.65992 -23.10643
-22.62112 -22.11523 -19.89785 -19.47575 -18.39393 -17.57606 -17.43513 -16.87534
-16.84387 -16.45643 -16.19404 -16.01502 -15.60458 -15.48108 -15.07244 -15.00794
-14.50154 -14.36261 -14.00307 -13.95486 -13.73268 -13.66962 -13.42080 -13.31322
-13.09507 -12.99854 -12.85714 -12.69584 -12.54976 -12.41991 -12.24377 -11.97581
-11.92700 -11.66910 -11.33374 -10.87218 -10.61428 -9.92705 -9.82043 -9.43514
-8.74613 -8.59931 -8.45108 -6.91947 -0.25973 0.43881 0.56965 0.83283
1.31643 1.47672 1.56796 1.62118 1.68284 1.88417 1.90527 2.15646
2.44907 2.77824 2.85074 3.12068 3.16997 3.62924 3.80118 3.88434
3.99149 4.09242 4.13783 4.30903 4.38858 4.47117 4.49611 4.53941
4.64689 4.71627 4.72840 4.79052 4.84115 4.93766 5.08804 5.13758
5.16091 5.25269 5.30297 5.34572 5.60295 5.72741 5.86422 5.87550
5.95922 6.19346 6.39572 6.51754 6.61534 7.37565 8.28572
Molecular weight = 343.12amu
Principal moments of inertia in cm(-1)
A = 0.010350 B = 0.003131 C = 0.002612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2704.726953 B = 8940.004583 C =10715.466202
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 N -0.555 5.555
3 C 0.094 3.906
4 C -0.047 4.047
5 C -0.103 4.103
6 C -0.068 4.068
7 C -0.045 4.045
8 C 0.281 3.719
9 N -0.468 5.468
10 C -0.066 4.066
11 C -0.114 4.114
12 C 0.321 3.679
13 N -0.368 5.368
14 N -0.361 5.361
15 C 0.350 3.650
16 C -0.452 4.452
17 H 0.116 0.884
18 C 0.037 3.963
19 N -0.771 5.771
20 Si 1.003 2.997
21 H -0.264 1.264
22 H -0.271 1.271
23 H -0.248 1.248
24 N -0.517 5.517
25 C 0.095 3.905
26 C 0.454 3.546
27 S -0.733 6.733
28 H 0.074 0.926
29 H 0.036 0.964
30 H 0.040 0.960
31 H 0.068 0.932
32 H 0.103 0.897
33 H 0.140 0.860
34 H 0.145 0.855
35 H 0.150 0.850
36 H 0.145 0.855
37 H 0.114 0.886
38 H 0.078 0.922
39 H 0.292 0.708
40 H 0.081 0.919
41 H 0.089 0.911
42 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.876 6.677 -1.299 6.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 N -0.281 5.281
3 C -0.033 4.033
4 C -0.048 4.048
5 C -0.122 4.122
6 C -0.089 4.089
7 C -0.049 4.049
8 C -0.033 4.033
9 N -0.144 5.144
10 C -0.086 4.086
11 C -0.132 4.132
12 C 0.110 3.890
13 N -0.154 5.154
14 N -0.193 5.193
15 C 0.102 3.898
16 C -0.494 4.494
17 H 0.134 0.866
18 C -0.187 4.187
19 N -0.396 5.396
20 Si 0.822 3.178
21 H -0.189 1.189
22 H -0.196 1.196
23 H -0.172 1.172
24 N -0.218 5.218
25 C -0.046 4.046
26 C 0.083 3.917
27 S -0.609 6.609
28 H 0.092 0.908
29 H 0.055 0.945
30 H 0.058 0.942
31 H 0.086 0.914
32 H 0.121 0.879
33 H 0.158 0.842
34 H 0.163 0.837
35 H 0.168 0.832
36 H 0.163 0.837
37 H 0.132 0.868
38 H 0.095 0.905
39 H 0.102 0.898
40 H 0.099 0.901
41 H 0.108 0.892
42 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 0.971 8.349 -3.129 8.968
hybrid contribution -0.006 -1.165 0.560 1.293
sum 0.965 7.183 -2.569 7.690
Atomic orbital electron populations
1.22433 0.86121 1.01324 1.00725 1.61865 1.09180 1.14260 1.42817
1.21138 1.01839 0.85643 0.94680 1.20031 0.94439 0.94979 0.95386
1.21137 1.00742 0.98519 0.91785 1.21316 0.94656 0.94345 0.98533
1.16078 0.98058 1.02875 0.87844 1.25936 0.92346 0.92316 0.92680
1.81262 1.09531 1.11339 1.12241 1.21311 0.98806 0.97532 0.90944
1.21209 0.96378 0.97232 0.98385 1.21899 1.00658 0.73370 0.93081
1.49474 1.13922 1.10185 1.41788 1.79336 1.16229 0.94435 1.29296
1.21702 0.80957 0.96100 0.91052 1.18871 1.05634 0.92188 1.32693
0.86617 1.26811 0.95072 1.02373 0.94403 1.69955 1.10296 1.31366
1.27979 0.84861 0.77881 0.76080 0.78976 1.18862 1.19614 1.17158
1.46256 1.20455 1.07960 1.47104 1.22019 0.89798 0.89682 1.03145
1.22965 0.91177 0.85736 0.91797 1.92647 1.35740 1.73814 1.58742
0.90786 0.94519 0.94162 0.91351 0.87892 0.84192 0.83694 0.83250
0.83707 0.86775 0.90476 0.89769 0.90084 0.89240 0.87700
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.36 7.94 127.69 1.01 2.38 16
2 N -0.56 -16.96 4.89 -939.51 -4.60 -21.56 16
3 C 0.09 1.95 5.11 85.56 0.44 2.39 16
4 C -0.05 -0.90 4.89 -19.80 -0.10 -1.00 16
5 C -0.10 -1.93 9.68 22.23 0.22 -1.72 16
6 C -0.07 -1.18 9.76 22.54 0.22 -0.96 16
7 C -0.04 -0.82 5.73 -21.36 -0.12 -0.94 16
8 C 0.28 6.14 15.33 88.33 1.35 7.49 16
9 N -0.47 -12.45 18.54 19.00 0.35 -12.09 16
10 C -0.07 -1.05 9.76 22.54 0.22 -0.83 16
11 C -0.11 -1.91 7.94 22.23 0.18 -1.74 16
12 C 0.32 11.14 5.98 170.81 1.02 12.16 16
13 N -0.37 -16.20 3.57 -359.73 -1.28 -17.49 16
14 N -0.36 -17.88 10.77 -55.17 -0.59 -18.48 16
15 C 0.35 16.73 7.50 133.53 1.00 17.73 16
16 C -0.45 -20.12 8.98 23.16 0.21 -19.91 16
17 H 0.12 4.51 7.11 -2.91 -0.02 4.49 16
18 C 0.04 1.58 5.50 85.29 0.47 2.05 16
19 N -0.77 -36.01 11.90 21.84 0.26 -35.75 16
20 Si 1.00 31.82 29.56 68.60 2.03 33.85 16
21 H -0.26 -8.25 7.11 99.48 0.71 -7.55 16
22 H -0.27 -8.47 7.11 99.48 0.71 -7.76 16
23 H -0.25 -7.38 7.11 99.48 0.71 -6.68 16
24 N -0.52 -22.52 3.17 -548.29 -1.74 -24.26 16
25 C 0.10 3.18 10.64 127.77 1.36 4.54 16
26 C 0.45 20.54 6.59 179.06 1.18 21.72 16
27 S -0.73 -33.40 27.23 -56.49 -1.54 -34.94 16
28 H 0.07 2.12 6.16 -2.38 -0.01 2.10 16
29 H 0.04 1.50 5.35 -2.39 -0.01 1.49 16
30 H 0.04 1.27 8.04 -2.39 -0.02 1.25 16
31 H 0.07 1.22 8.06 -2.39 -0.02 1.20 16
32 H 0.10 1.86 7.87 -2.39 -0.02 1.85 16
33 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16
34 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16
35 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16
36 H 0.15 2.08 8.02 -2.91 -0.02 2.06 16
37 H 0.11 3.64 7.93 -2.39 -0.02 3.62 16
38 H 0.08 2.64 7.61 -2.39 -0.02 2.62 16
39 H 0.29 12.29 8.30 -92.71 -0.77 11.52 16
40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16
41 H 0.09 2.99 7.62 -2.39 -0.02 2.97 16
42 H 0.10 3.02 7.32 -2.39 -0.02 3.01 16
Total: -1.00 -65.04 373.99 2.61 -62.44
By element:
Atomic # 1 Polarization: 23.86 SS G_CDS: 1.06 Total: 24.92 kcal
Atomic # 6 Polarization: 34.70 SS G_CDS: 8.66 Total: 43.36 kcal
Atomic # 7 Polarization: -122.02 SS G_CDS: -7.60 Total: -129.62 kcal
Atomic # 14 Polarization: 31.82 SS G_CDS: 2.03 Total: 33.85 kcal
Atomic # 16 Polarization: -33.40 SS G_CDS: -1.54 Total: -34.94 kcal
Total: -65.04 2.61 -62.44 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000794618884.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 194.863 kcal
(2) G-P(sol) polarization free energy of solvation -65.043 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.821 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.436 kcal
(6) G-S(sol) free energy of system = (1) + (5) 132.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds