Wall clock time and date at job start Sat Apr 11 2020 06:50:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86797 * 119.99958 * 2 1
4 4 H 1.48495 * 109.47249 * 272.92901 * 3 2 1
5 5 H 1.48505 * 109.47030 * 32.92871 * 3 2 1
6 6 H 1.48494 * 109.47189 * 152.92286 * 3 2 1
7 7 C 1.38803 * 119.99924 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00222 * 339.34914 * 7 2 1
9 9 N 1.36943 * 120.00050 * 159.35284 * 7 2 1
10 10 C 1.46927 * 120.63244 * 152.60283 * 9 7 2
11 11 C 1.53189 * 108.77536 * 126.41224 * 10 9 7
12 12 C 1.53036 * 109.33865 * 54.62197 * 11 10 9
13 13 C 1.53041 * 109.53734 * 298.67795 * 12 11 10
14 14 H 1.08996 * 109.47290 * 301.36638 * 13 12 11
15 15 N 1.46501 * 109.52298 * 181.30458 * 13 12 11
16 16 C 1.34775 * 119.99806 * 155.11720 * 15 13 12
17 17 O 1.21550 * 120.00577 * 359.97438 * 16 15 13
18 18 C 1.47892 * 119.99934 * 179.97438 * 16 15 13
19 19 C 1.38801 * 119.32545 * 179.72748 * 18 16 15
20 20 C 1.39866 * 118.37298 * 179.72183 * 19 18 16
21 21 C 1.41396 * 122.95256 * 180.26356 * 20 19 18
22 22 O 1.35220 * 120.99089 * 0.27805 * 21 20 19
23 23 N 1.32484 * 118.01210 * 180.25425 * 21 20 19
24 24 C 1.32360 * 121.48583 * 0.02562 * 23 21 20
25 25 N 1.31300 * 123.10162 * 0.02562 * 24 23 21
26 26 C 1.33704 * 120.36156 * 359.97438 * 25 24 23
27 27 C 1.40617 * 122.62116 * 180.02562 * 26 25 24
28 28 N 1.30906 * 120.15715 * 179.97438 * 27 26 25
29 29 C 1.46923 * 120.62780 * 332.62424 * 9 7 2
30 30 H 0.96999 * 119.99921 * 359.97438 * 1 2 3
31 31 H 1.09002 * 109.58682 * 6.62262 * 10 9 7
32 32 H 1.09001 * 109.69908 * 246.27193 * 10 9 7
33 33 H 1.09010 * 109.49726 * 174.58569 * 11 10 9
34 34 H 1.08994 * 109.50122 * 294.64687 * 11 10 9
35 35 H 1.08999 * 109.46384 * 58.66707 * 12 11 10
36 36 H 1.09002 * 109.46003 * 178.63114 * 12 11 10
37 37 H 0.97001 * 119.99943 * 335.10868 * 15 13 12
38 38 H 1.08006 * 120.81608 * 359.97438 * 19 18 16
39 39 H 0.96694 * 114.00401 * 269.97288 * 22 21 20
40 40 H 1.08003 * 118.44898 * 179.97438 * 24 23 21
41 41 H 1.08001 * 119.92013 * 359.97438 * 27 26 25
42 42 H 1.08997 * 109.58928 * 353.37079 * 29 9 7
43 43 H 1.09003 * 109.58804 * 113.80212 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.4358 2.0822 -1.3982
5 1 1.4800 2.6340 0.7611
6 1 3.5773 1.4231 0.6373
7 6 2.0103 -1.2021 -0.0005
8 1 1.5223 -2.1075 0.3289
9 7 3.3137 -1.2400 -0.4187
10 6 4.2351 -2.2629 0.0945
11 6 4.8755 -2.9898 -1.0923
12 6 5.5291 -1.9646 -2.0216
13 6 4.4625 -1.0076 -2.5590
14 1 3.7000 -1.5756 -3.0919
15 7 5.0835 -0.0456 -3.4729
16 6 4.3439 0.5487 -4.4301
17 8 3.1618 0.2863 -4.5354
18 6 4.9707 1.5202 -5.3523
19 6 4.1971 2.1197 -6.3366
20 6 4.8088 3.0399 -7.1941
21 6 4.1122 3.7108 -8.2255
22 8 2.7936 3.4931 -8.4310
23 7 4.7899 4.5595 -8.9842
24 6 6.0808 4.7799 -8.7917
25 7 6.7773 4.1850 -7.8510
26 6 6.1917 3.3090 -7.0281
27 6 6.8916 2.6453 -6.0049
28 7 6.2696 1.7967 -5.2260
29 6 3.8175 -0.2583 -1.3888
30 1 -0.4850 0.8400 0.0004
31 1 3.6841 -2.9772 0.7063
32 1 5.0117 -1.7897 0.6954
33 1 5.6320 -3.6849 -0.7280
34 1 4.1092 -3.5396 -1.6386
35 1 6.2785 -1.3986 -1.4683
36 1 6.0064 -2.4815 -2.8542
37 1 6.0270 0.1636 -3.3890
38 1 3.1476 1.8846 -6.4352
39 1 2.6053 2.7741 -9.0497
40 1 6.5851 5.4818 -9.4394
41 1 7.9448 2.8362 -5.8612
42 1 2.9909 0.3502 -1.7558
43 1 4.5599 0.3805 -0.9103
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001009355768.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:10
Heat of formation + Delta-G solvation = 6.747444 kcal
Electronic energy + Delta-G solvation = -29502.685523 eV
Core-core repulsion = 25355.213947 eV
Total energy + Delta-G solvation = -4147.471575 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.143 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-43.01147 -41.33802 -39.92660 -39.14981 -38.77691 -36.03090 -34.68477 -34.52296
-33.85418 -32.62336 -32.08291 -30.57596 -27.23321 -26.91426 -26.65584 -24.57745
-24.09170 -23.72396 -22.31033 -21.33986 -20.76692 -19.82890 -19.76384 -18.87036
-18.45350 -17.77417 -17.20767 -17.02298 -16.82875 -16.37707 -16.04212 -15.84605
-15.64868 -15.62233 -15.48053 -15.29431 -14.95433 -14.74453 -14.51306 -14.20468
-14.04037 -13.86742 -13.46555 -13.43416 -12.68337 -12.59539 -12.49155 -12.20386
-12.13041 -11.86289 -11.77815 -11.70469 -11.60036 -11.50260 -11.38177 -11.19230
-10.83923 -10.52064 -10.29203 -9.79769 -8.96028 -8.23454 -5.53593 -1.43187
-0.95011 0.20425 1.14291 1.22465 1.27331 1.37166 1.81149 1.93436
2.05244 2.34806 2.65239 2.67540 2.78765 2.88277 3.00732 3.16444
3.32539 3.39575 3.65980 3.78544 3.90045 4.01200 4.13286 4.17315
4.25714 4.32338 4.39716 4.41784 4.64705 4.79048 4.86062 4.89519
4.95738 4.99984 5.06967 5.15247 5.21488 5.32731 5.49613 5.54263
5.82567 6.07739 6.17193 6.25595 6.49465 6.70642 6.86227 7.04624
7.57431 7.97128 8.96427
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.014863 B = 0.003052 C = 0.002759
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1883.401578 B = 9172.284317 C =10147.463775
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.953 5.953
2 C -0.032 4.032
3 Si 0.941 3.059
4 H -0.298 1.298
5 H -0.307 1.307
6 H -0.252 1.252
7 C -0.245 4.245
8 H 0.059 0.941
9 N -0.617 5.617
10 C 0.135 3.865
11 C -0.123 4.123
12 C -0.107 4.107
13 C 0.134 3.866
14 H 0.062 0.938
15 N -0.690 5.690
16 C 0.559 3.441
17 O -0.569 6.569
18 C 0.038 3.962
19 C -0.044 4.044
20 C -0.175 4.175
21 C 0.428 3.572
22 O -0.472 6.472
23 N -0.545 5.545
24 C 0.337 3.663
25 N -0.500 5.500
26 C 0.130 3.870
27 C 0.168 3.832
28 N -0.435 5.435
29 C 0.120 3.880
30 H 0.260 0.740
31 H 0.059 0.941
32 H 0.044 0.956
33 H 0.105 0.895
34 H 0.049 0.951
35 H 0.085 0.915
36 H 0.091 0.909
37 H 0.422 0.578
38 H 0.158 0.842
39 H 0.440 0.560
40 H 0.248 0.752
41 H 0.223 0.777
42 H 0.034 0.966
43 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 21.104 5.410 -19.582 29.293
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.600 5.600
2 C -0.227 4.227
3 Si 0.771 3.229
4 H -0.226 1.226
5 H -0.235 1.235
6 H -0.176 1.176
7 C -0.375 4.375
8 H 0.077 0.923
9 N -0.342 5.342
10 C 0.011 3.989
11 C -0.163 4.163
12 C -0.144 4.144
13 C 0.027 3.973
14 H 0.080 0.920
15 N -0.341 5.341
16 C 0.345 3.655
17 O -0.448 6.448
18 C -0.087 4.087
19 C -0.067 4.067
20 C -0.186 4.186
21 C 0.226 3.774
22 O -0.284 6.284
23 N -0.272 5.272
24 C 0.050 3.950
25 N -0.217 5.217
26 C -0.001 4.001
27 C -0.008 4.008
28 N -0.147 5.147
29 C -0.007 4.007
30 H 0.069 0.931
31 H 0.077 0.923
32 H 0.062 0.938
33 H 0.123 0.877
34 H 0.068 0.932
35 H 0.104 0.896
36 H 0.109 0.891
37 H 0.260 0.740
38 H 0.176 0.824
39 H 0.306 0.694
40 H 0.264 0.736
41 H 0.239 0.761
42 H 0.053 0.947
43 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 20.902 5.768 -19.033 28.852
hybrid contribution -1.416 0.598 -0.249 1.558
sum 19.486 6.366 -19.282 28.143
Atomic orbital electron populations
1.69957 1.07229 1.26988 1.55779 1.25855 0.95795 1.00681 1.00417
0.85994 0.79482 0.81197 0.76254 1.22650 1.23518 1.17606 1.18904
0.86988 0.93524 1.38081 0.92279 1.44451 1.08135 1.34934 1.46687
1.21283 0.92057 0.90318 0.95193 1.21917 1.00192 0.97660 0.96493
1.21676 0.96214 0.96427 1.00130 1.21515 0.96474 0.90066 0.89210
0.91999 1.45786 1.14177 1.43012 1.31138 1.18203 0.85665 0.80654
0.80986 1.90860 1.16732 1.64147 1.73043 1.20738 0.90908 0.99730
0.97324 1.22062 1.01893 0.91551 0.91210 1.19815 0.96488 1.01193
1.01072 1.19663 0.84429 0.86474 0.86796 1.84587 1.15249 1.59962
1.68649 1.68210 1.11172 1.18055 1.29736 1.25832 0.84658 0.93305
0.91235 1.68828 1.38862 1.08470 1.05491 1.20360 0.89748 0.94055
0.95949 1.23636 1.01709 0.88424 0.86994 1.67382 1.08297 1.13916
1.25058 1.21630 0.96557 0.92326 0.90173 0.93095 0.92258 0.93777
0.87680 0.93179 0.89626 0.89083 0.73952 0.82427 0.69365 0.73587
0.76087 0.94726 0.94686
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -63.43 13.97 21.65 0.30 -63.13 16
2 C -0.03 -2.03 5.23 84.86 0.44 -1.58 16
3 Si 0.94 50.67 24.34 68.60 1.67 52.34 16
4 H -0.30 -16.39 6.62 99.48 0.66 -15.73 16
5 H -0.31 -16.47 7.11 99.48 0.71 -15.77 16
6 H -0.25 -12.57 6.63 99.48 0.66 -11.91 16
7 C -0.25 -14.54 10.04 84.03 0.84 -13.69 16
8 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16
9 N -0.62 -29.92 2.77 -699.09 -1.94 -31.86 16
10 C 0.14 4.97 6.52 86.36 0.56 5.53 16
11 C -0.12 -3.43 6.08 30.67 0.19 -3.25 16
12 C -0.11 -2.74 5.36 30.62 0.16 -2.57 16
13 C 0.13 4.80 2.60 45.07 0.12 4.92 16
14 H 0.06 2.64 7.58 -2.39 -0.02 2.62 16
15 N -0.69 -21.41 5.07 -444.99 -2.26 -23.66 16
16 C 0.56 19.62 7.76 86.80 0.67 20.29 16
17 O -0.57 -25.35 15.95 -3.87 -0.06 -25.41 16
18 C 0.04 1.04 6.74 41.60 0.28 1.32 16
19 C -0.04 -1.08 9.23 22.80 0.21 -0.87 16
20 C -0.17 -3.58 5.76 -21.21 -0.12 -3.70 16
21 C 0.43 7.76 7.91 85.37 0.68 8.44 16
22 O -0.47 -7.34 13.04 -85.02 -1.11 -8.44 16
23 N -0.55 -8.98 10.42 -311.94 -3.25 -12.23 16
24 C 0.34 4.16 12.21 180.86 2.21 6.37 16
25 N -0.50 -7.59 10.46 -193.57 -2.02 -9.61 16
26 C 0.13 2.37 6.64 40.33 0.27 2.63 16
27 C 0.17 2.73 11.26 85.41 0.96 3.69 16
28 N -0.44 -9.43 9.43 -183.88 -1.73 -11.16 16
29 C 0.12 5.44 3.78 86.36 0.33 5.76 16
30 H 0.26 16.54 8.31 -92.71 -0.77 15.77 16
31 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16
32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16
34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16
35 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16
36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
37 H 0.42 10.13 7.90 -92.71 -0.73 9.40 16
38 H 0.16 4.06 7.38 -2.91 -0.02 4.03 16
39 H 0.44 2.06 9.06 -74.06 -0.67 1.39 16
40 H 0.25 0.80 8.06 -2.91 -0.02 0.78 16
41 H 0.22 1.86 8.06 -2.91 -0.02 1.84 16
42 H 0.03 1.89 4.50 -2.39 -0.01 1.88 16
43 H 0.04 1.52 7.08 -2.39 -0.02 1.50 16
Total: -1.00 -86.39 357.54 -3.00 -89.39
By element:
Atomic # 1 Polarization: 10.90 SS G_CDS: -0.40 Total: 10.50 kcal
Atomic # 6 Polarization: 25.49 SS G_CDS: 7.80 Total: 33.29 kcal
Atomic # 7 Polarization: -140.75 SS G_CDS: -10.90 Total: -151.65 kcal
Atomic # 8 Polarization: -32.68 SS G_CDS: -1.17 Total: -33.85 kcal
Atomic # 14 Polarization: 50.67 SS G_CDS: 1.67 Total: 52.34 kcal
Total: -86.39 -3.00 -89.39 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001009355768.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 96.137 kcal
(2) G-P(sol) polarization free energy of solvation -86.387 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.751 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.003 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.390 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds