Wall clock time and date at job start Sat Apr 11 2020 06:49:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86796 * 120.00467 * 2 1
4 4 H 1.48498 * 109.47358 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47360 * 300.00633 * 3 2 1
6 6 H 1.48504 * 109.46783 * 60.00284 * 3 2 1
7 7 C 1.38811 * 119.99389 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99653 * 179.97438 * 7 2 1
9 9 N 1.36938 * 120.00498 * 359.97438 * 7 2 1
10 10 C 1.47812 * 134.38520 * 179.97438 * 9 7 2
11 11 C 1.52723 * 85.72465 * 156.23484 * 10 9 7
12 12 C 1.47816 * 134.38382 * 359.97438 * 9 7 2
13 13 C 1.53806 * 115.65720 * 140.36202 * 11 10 9
14 14 C 1.55024 * 101.90117 * 94.50359 * 13 11 10
15 15 H 1.09002 * 110.47126 * 261.00797 * 14 13 11
16 16 N 1.46495 * 110.58279 * 138.45388 * 14 13 11
17 17 C 1.34782 * 119.99866 * 158.63252 * 16 14 13
18 18 O 1.21591 * 119.99903 * 359.97438 * 17 16 14
19 19 C 1.47524 * 120.00076 * 180.02562 * 17 16 14
20 20 C 1.39253 * 120.24512 * 359.97438 * 19 17 16
21 21 C 1.38446 * 120.28109 * 179.97438 * 20 19 17
22 22 C 1.37641 * 120.79486 * 0.02562 * 21 20 19
23 23 C 1.40080 * 120.15198 * 0.04504 * 22 21 20
24 24 N 1.35406 * 133.02740 * 179.97438 * 23 22 21
25 25 N 1.28673 * 110.09579 * 179.15849 * 24 23 22
26 26 N 1.40244 * 109.43324 * 0.70573 * 25 24 23
27 27 H 0.97003 * 126.66416 * 179.38699 * 26 25 24
28 28 C 1.36972 * 106.67537 * 359.40706 * 26 25 24
29 29 C 1.54180 * 104.27398 * 19.70095 * 14 13 11
30 30 O 1.43159 * 116.23666 * 264.67039 * 11 10 9
31 31 H 0.97005 * 119.99534 * 359.97438 * 1 2 3
32 32 H 1.09005 * 113.83278 * 42.03805 * 10 9 7
33 33 H 1.09001 * 113.94876 * 270.44734 * 10 9 7
34 34 H 1.08998 * 113.83197 * 89.56732 * 12 9 7
35 35 H 1.08997 * 113.82812 * 317.96939 * 12 9 7
36 36 H 1.09004 * 110.94527 * 336.35506 * 13 11 10
37 37 H 1.09001 * 110.94402 * 212.65348 * 13 11 10
38 38 H 0.96999 * 120.00220 * 338.62328 * 16 14 13
39 39 H 1.08007 * 119.86281 * 0.02562 * 20 19 17
40 40 H 1.07997 * 119.60343 * 180.02562 * 21 20 19
41 41 H 1.07999 * 119.92463 * 180.02562 * 22 21 20
42 42 H 1.09002 * 109.85413 * 121.22671 * 29 14 13
43 43 H 1.09001 * 109.85355 * 242.16764 * 29 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8915 2.3965 -1.2124
6 1 1.8916 2.3963 1.2126
7 6 2.0101 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3254 -2.3881 -0.0005
10 6 1.7232 -3.8117 -0.0015
11 6 0.3507 -4.0775 0.6132
12 6 -0.1064 -2.7553 0.0004
13 6 -0.3753 -5.3339 0.1035
14 6 0.0304 -6.3898 1.1636
15 1 0.8529 -7.0031 0.7955
16 7 -1.1157 -7.2307 1.5178
17 6 -0.9161 -8.4458 2.0657
18 8 0.2152 -8.8442 2.2656
19 6 -2.0701 -9.2930 2.4219
20 6 -3.3679 -8.8420 2.1947
21 6 -4.4515 -9.6366 2.5282
22 6 -4.2674 -10.8805 3.0881
23 6 -2.9731 -11.3590 3.3292
24 7 -2.4976 -12.5125 3.8553
25 7 -1.2110 -12.5002 3.8572
26 7 -0.7552 -11.2848 3.3262
27 1 0.1689 -11.0096 3.2197
28 6 -1.8681 -10.5618 2.9877
29 6 0.4823 -5.5547 2.3783
30 8 0.3032 -4.1662 2.0413
31 1 -0.4850 0.8401 0.0004
32 1 2.5555 -4.0369 0.6655
33 1 1.8491 -4.2353 -0.9979
34 1 -0.5357 -2.8569 -0.9963
35 1 -0.7164 -2.1476 0.6687
36 1 -0.0159 -5.6172 -0.8859
37 1 -1.4549 -5.1841 0.0962
38 1 -2.0181 -6.9130 1.3581
39 1 -3.5298 -7.8686 1.7557
40 1 -5.4532 -9.2762 2.3468
41 1 -5.1228 -11.4888 3.3424
42 1 -0.1258 -5.8061 3.2473
43 1 1.5329 -5.7511 2.5924
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001053814575.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:57
Heat of formation + Delta-G solvation = 101.290596 kcal
Electronic energy + Delta-G solvation = -29003.318980 eV
Core-core repulsion = 24859.947103 eV
Total energy + Delta-G solvation = -4143.371877 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.143 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-42.58696 -40.57874 -39.47603 -37.78733 -36.29852 -34.70877 -33.92663 -32.13818
-31.62725 -30.60177 -30.00669 -28.19730 -25.94136 -25.13056 -24.93266 -23.92508
-22.95673 -22.24162 -21.42888 -20.95749 -19.09269 -18.78041 -18.33948 -17.19133
-16.80696 -16.63169 -16.18007 -15.85732 -15.48017 -15.37106 -15.06425 -14.90379
-14.72216 -14.50879 -13.91308 -13.55859 -13.14264 -12.98315 -12.81084 -12.73732
-12.52335 -12.47836 -11.97882 -11.81642 -11.72853 -11.62710 -11.62231 -11.26806
-11.18906 -10.86090 -10.74474 -10.34774 -10.16372 -9.77946 -9.63576 -9.48438
-9.42057 -9.02275 -8.89973 -8.81965 -6.91536 -5.78236 -3.09834 -0.30632
0.71210 1.48074 2.02866 2.45107 2.67657 3.18602 3.38858 3.44136
3.46705 3.62419 3.99939 4.12914 4.15900 4.27271 4.35080 4.43521
4.49857 4.60225 4.93464 4.95239 4.96585 5.10275 5.15414 5.26347
5.30702 5.34183 5.53454 5.53686 5.63382 5.66829 5.80569 5.87154
5.94768 5.98305 6.22115 6.26911 6.46961 6.55239 6.55913 6.84888
7.08075 7.14360 7.44952 7.49998 7.64974 7.74536 7.96257 9.02837
9.69251 10.54781 11.39530
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.031632 B = 0.002044 C = 0.001968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 884.962482 B =13695.295516 C =14221.727200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.008 4.008
3 Si 0.913 3.087
4 H -0.279 1.279
5 H -0.291 1.291
6 H -0.290 1.290
7 C -0.220 4.220
8 H 0.081 0.919
9 N -0.605 5.605
10 C 0.103 3.897
11 C 0.060 3.940
12 C 0.177 3.823
13 C -0.145 4.145
14 C 0.113 3.887
15 H 0.104 0.896
16 N -0.707 5.707
17 C 0.563 3.437
18 O -0.547 6.547
19 C -0.143 4.143
20 C -0.023 4.023
21 C -0.144 4.144
22 C -0.002 4.002
23 C -0.031 4.031
24 N -0.213 5.213
25 N 0.000 5.000
26 N -0.476 5.476
27 H 0.458 0.542
28 C 0.141 3.859
29 C 0.038 3.962
30 O -0.333 6.333
31 H 0.253 0.747
32 H 0.049 0.951
33 H 0.044 0.956
34 H 0.043 0.957
35 H 0.082 0.918
36 H 0.090 0.910
37 H 0.084 0.916
38 H 0.403 0.597
39 H 0.145 0.855
40 H 0.148 0.852
41 H 0.146 0.854
42 H 0.080 0.920
43 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.841 -21.775 3.221 24.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.205 4.205
3 Si 0.743 3.257
4 H -0.205 1.205
5 H -0.218 1.218
6 H -0.217 1.217
7 C -0.347 4.347
8 H 0.098 0.902
9 N -0.331 5.331
10 C -0.024 4.024
11 C 0.019 3.981
12 C 0.052 3.948
13 C -0.184 4.184
14 C 0.009 3.991
15 H 0.122 0.878
16 N -0.359 5.359
17 C 0.351 3.649
18 O -0.426 6.426
19 C -0.151 4.151
20 C -0.045 4.045
21 C -0.166 4.166
22 C -0.024 4.024
23 C -0.155 4.155
24 N -0.092 5.092
25 N 0.018 4.982
26 N -0.200 5.200
27 H 0.308 0.692
28 C 0.015 3.985
29 C -0.041 4.041
30 O -0.251 6.251
31 H 0.063 0.937
32 H 0.067 0.933
33 H 0.061 0.939
34 H 0.060 0.940
35 H 0.100 0.900
36 H 0.108 0.892
37 H 0.102 0.898
38 H 0.240 0.760
39 H 0.162 0.838
40 H 0.166 0.834
41 H 0.164 0.836
42 H 0.098 0.902
43 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -9.604 -22.886 4.135 25.162
hybrid contribution 0.483 1.974 -0.749 2.166
sum -9.121 -20.912 3.386 23.064
Atomic orbital electron populations
1.69809 1.05009 1.25261 1.56842 1.24774 0.95719 0.97538 1.02447
0.86029 0.78742 0.83639 0.77247 1.20466 1.21757 1.21656 1.19042
0.90289 0.81798 1.43606 0.90151 1.45864 1.01969 0.99158 1.86114
1.22924 0.95102 0.87187 0.97140 1.23824 0.97241 0.95672 0.81362
1.22148 0.88840 0.87101 0.96684 1.23218 1.02079 0.94502 0.98632
1.22544 0.88965 0.92026 0.95600 0.87824 1.45987 1.10455 1.16611
1.62832 1.18016 0.88218 0.81365 0.77309 1.90731 1.23985 1.73235
1.54663 1.18930 0.94461 0.93062 1.08601 1.21459 0.90401 0.99293
0.93387 1.20980 0.99802 0.94004 1.01764 1.20712 0.93916 0.94943
0.92852 1.19984 0.94898 0.92543 1.08061 1.74916 1.02504 1.18369
1.13449 1.81640 1.04563 0.99937 1.12075 1.47938 1.09829 1.13051
1.49169 0.69173 1.19003 0.87958 0.93617 0.97971 1.23578 1.00914
0.82694 0.96900 1.88872 1.93102 1.22552 1.20578 0.93669 0.93304
0.93898 0.93957 0.89962 0.89182 0.89752 0.76043 0.83769 0.83432
0.83637 0.90214 0.91829
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.18 11.40 55.49 0.63 -26.55 16
2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16
3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16
4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
7 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16
8 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16
9 N -0.60 -15.52 3.71 -184.63 -0.68 -16.20 16
10 C 0.10 2.06 8.49 -3.47 -0.03 2.03 16
11 C 0.06 1.09 1.28 -90.67 -0.12 0.97 16
12 C 0.18 4.04 7.05 -3.46 -0.02 4.01 16
13 C -0.15 -1.81 6.21 -25.24 -0.16 -1.97 16
14 C 0.11 1.33 3.35 -66.25 -0.22 1.10 16
15 H 0.10 1.26 7.66 -51.93 -0.40 0.86 16
16 N -0.71 -6.46 5.00 -53.22 -0.27 -6.73 16
17 C 0.56 5.88 7.76 -12.47 -0.10 5.78 16
18 O -0.55 -7.24 14.99 5.29 0.08 -7.16 16
19 C -0.14 -1.24 5.88 -104.93 -0.62 -1.85 16
20 C -0.02 -0.12 9.53 -39.13 -0.37 -0.50 16
21 C -0.14 -0.63 9.98 -39.72 -0.40 -1.02 16
22 C 0.00 -0.01 10.09 -39.11 -0.39 -0.41 16
23 C -0.03 -0.30 7.26 -84.76 -0.62 -0.91 16
24 N -0.21 -2.43 12.40 32.15 0.40 -2.03 16
25 N 0.00 0.00 13.83 60.35 0.83 0.83 16
26 N -0.48 -5.05 7.32 32.50 0.24 -4.81 16
27 H 0.46 4.42 7.72 -182.49 -1.41 3.01 16
28 C 0.14 1.43 6.93 -83.92 -0.58 0.85 16
29 C 0.04 0.54 7.51 37.77 0.28 0.82 16
30 O -0.33 -6.34 11.35 -35.23 -0.40 -6.74 16
31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16
32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16
33 H 0.04 0.79 8.00 -51.93 -0.42 0.37 16
34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16
35 H 0.08 2.13 7.20 -51.93 -0.37 1.76 16
36 H 0.09 1.02 7.95 -51.93 -0.41 0.61 16
37 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16
38 H 0.40 2.56 6.38 -40.82 -0.26 2.30 16
39 H 0.14 0.37 6.39 -52.48 -0.34 0.04 16
40 H 0.15 0.20 8.06 -52.49 -0.42 -0.23 16
41 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16
42 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16
43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
LS Contribution 362.07 15.07 5.46 5.46
Total: -1.00 -35.46 362.07 -8.41 -43.87
By element:
Atomic # 1 Polarization: 6.74 SS G_CDS: -6.08 Total: 0.66 kcal
Atomic # 6 Polarization: 5.80 SS G_CDS: -3.60 Total: 2.20 kcal
Atomic # 7 Polarization: -56.64 SS G_CDS: 1.15 Total: -55.49 kcal
Atomic # 8 Polarization: -13.58 SS G_CDS: -0.32 Total: -13.90 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -35.46 -8.41 -43.87 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053814575.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.161 kcal
(2) G-P(sol) polarization free energy of solvation -35.460 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.701 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal
(6) G-S(sol) free energy of system = (1) + (5) 101.291 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds