Wall clock time and date at job start Sat Apr 11 2020 06:49:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86796 * 120.00467 * 2 1
4 4 H 1.48498 * 109.47358 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47360 * 300.00633 * 3 2 1
6 6 H 1.48504 * 109.46783 * 60.00284 * 3 2 1
7 7 C 1.38811 * 119.99389 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99653 * 179.97438 * 7 2 1
9 9 N 1.36938 * 120.00498 * 359.97438 * 7 2 1
10 10 C 1.47812 * 134.38520 * 179.97438 * 9 7 2
11 11 C 1.52723 * 85.72465 * 156.23484 * 10 9 7
12 12 C 1.47816 * 134.38382 * 359.97438 * 9 7 2
13 13 C 1.53806 * 115.65720 * 140.36202 * 11 10 9
14 14 C 1.55024 * 101.90117 * 94.50359 * 13 11 10
15 15 H 1.09002 * 110.47126 * 261.00797 * 14 13 11
16 16 N 1.46495 * 110.58279 * 138.45388 * 14 13 11
17 17 C 1.34782 * 119.99866 * 158.63252 * 16 14 13
18 18 O 1.21591 * 119.99903 * 359.97438 * 17 16 14
19 19 C 1.47524 * 120.00076 * 180.02562 * 17 16 14
20 20 C 1.39253 * 120.24512 * 359.97438 * 19 17 16
21 21 C 1.38446 * 120.28109 * 179.97438 * 20 19 17
22 22 C 1.37641 * 120.79486 * 0.02562 * 21 20 19
23 23 C 1.40080 * 120.15198 * 0.04504 * 22 21 20
24 24 N 1.35406 * 133.02740 * 179.97438 * 23 22 21
25 25 N 1.28673 * 110.09579 * 179.15849 * 24 23 22
26 26 N 1.40244 * 109.43324 * 0.70573 * 25 24 23
27 27 H 0.97003 * 126.66416 * 179.38699 * 26 25 24
28 28 C 1.36972 * 106.67537 * 359.40706 * 26 25 24
29 29 C 1.54180 * 104.27398 * 19.70095 * 14 13 11
30 30 O 1.43159 * 116.23666 * 264.67039 * 11 10 9
31 31 H 0.97005 * 119.99534 * 359.97438 * 1 2 3
32 32 H 1.09005 * 113.83278 * 42.03805 * 10 9 7
33 33 H 1.09001 * 113.94876 * 270.44734 * 10 9 7
34 34 H 1.08998 * 113.83197 * 89.56732 * 12 9 7
35 35 H 1.08997 * 113.82812 * 317.96939 * 12 9 7
36 36 H 1.09004 * 110.94527 * 336.35506 * 13 11 10
37 37 H 1.09001 * 110.94402 * 212.65348 * 13 11 10
38 38 H 0.96999 * 120.00220 * 338.62328 * 16 14 13
39 39 H 1.08007 * 119.86281 * 0.02562 * 20 19 17
40 40 H 1.07997 * 119.60343 * 180.02562 * 21 20 19
41 41 H 1.07999 * 119.92463 * 180.02562 * 22 21 20
42 42 H 1.09002 * 109.85413 * 121.22671 * 29 14 13
43 43 H 1.09001 * 109.85355 * 242.16764 * 29 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8915 2.3965 -1.2124
6 1 1.8916 2.3963 1.2126
7 6 2.0101 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3254 -2.3881 -0.0005
10 6 1.7232 -3.8117 -0.0015
11 6 0.3507 -4.0775 0.6132
12 6 -0.1064 -2.7553 0.0004
13 6 -0.3753 -5.3339 0.1035
14 6 0.0304 -6.3898 1.1636
15 1 0.8529 -7.0031 0.7955
16 7 -1.1157 -7.2307 1.5178
17 6 -0.9161 -8.4458 2.0657
18 8 0.2152 -8.8442 2.2656
19 6 -2.0701 -9.2930 2.4219
20 6 -3.3679 -8.8420 2.1947
21 6 -4.4515 -9.6366 2.5282
22 6 -4.2674 -10.8805 3.0881
23 6 -2.9731 -11.3590 3.3292
24 7 -2.4976 -12.5125 3.8553
25 7 -1.2110 -12.5002 3.8572
26 7 -0.7552 -11.2848 3.3262
27 1 0.1689 -11.0096 3.2197
28 6 -1.8681 -10.5618 2.9877
29 6 0.4823 -5.5547 2.3783
30 8 0.3032 -4.1662 2.0413
31 1 -0.4850 0.8401 0.0004
32 1 2.5555 -4.0369 0.6655
33 1 1.8491 -4.2353 -0.9979
34 1 -0.5357 -2.8569 -0.9963
35 1 -0.7164 -2.1476 0.6687
36 1 -0.0159 -5.6172 -0.8859
37 1 -1.4549 -5.1841 0.0962
38 1 -2.0181 -6.9130 1.3581
39 1 -3.5298 -7.8686 1.7557
40 1 -5.4532 -9.2762 2.3468
41 1 -5.1228 -11.4888 3.3424
42 1 -0.1258 -5.8061 3.2473
43 1 1.5329 -5.7511 2.5924
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001053814575.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:49:56
Heat of formation + Delta-G solvation = 73.371369 kcal
Electronic energy + Delta-G solvation = -29004.529648 eV
Core-core repulsion = 24859.947103 eV
Total energy + Delta-G solvation = -4144.582545 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.143 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-43.25241 -41.69682 -40.55626 -38.38468 -37.76804 -35.76224 -34.61569 -34.13350
-32.48236 -31.20463 -30.99144 -29.70042 -27.55349 -26.66362 -25.70040 -24.72893
-23.83746 -23.54036 -22.46914 -21.84535 -20.53968 -19.52176 -18.93458 -18.74377
-17.86464 -17.62841 -17.02344 -16.86330 -16.66576 -16.57326 -16.19084 -16.00749
-15.70835 -15.48582 -15.25768 -15.02825 -14.57702 -14.42119 -13.57644 -13.32755
-13.30223 -13.23411 -13.10157 -13.08714 -12.95895 -12.87723 -12.76521 -12.68379
-12.35843 -12.33838 -12.23386 -11.85106 -11.63612 -11.33123 -11.13156 -10.95458
-10.59512 -10.19496 -10.03413 -9.51489 -8.92195 -7.90943 -5.22827 -0.87339
0.12854 0.81577 1.35820 1.44637 1.46049 1.55914 1.75909 1.89787
2.46638 2.61640 2.83513 3.01221 3.28509 3.35304 3.39633 3.46126
3.67435 3.69233 3.72948 3.78783 3.89049 4.07258 4.12083 4.21306
4.50136 4.57281 4.65652 4.66675 4.73824 4.75406 4.81090 4.91641
4.94679 4.98882 5.12907 5.20505 5.22465 5.25974 5.34786 5.52215
5.59796 5.85871 5.93135 6.18510 6.38670 6.77737 6.92595 7.02508
7.60110 8.53996 9.26454
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.031632 B = 0.002044 C = 0.001968
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 884.962482 B =13695.295516 C =14221.727200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.951 5.951
2 C -0.068 4.068
3 Si 0.978 3.022
4 H -0.268 1.268
5 H -0.288 1.288
6 H -0.293 1.293
7 C -0.234 4.234
8 H 0.079 0.921
9 N -0.642 5.642
10 C 0.100 3.900
11 C 0.078 3.922
12 C 0.174 3.826
13 C -0.129 4.129
14 C 0.129 3.871
15 H 0.104 0.896
16 N -0.694 5.694
17 C 0.564 3.436
18 O -0.582 6.582
19 C -0.167 4.167
20 C 0.000 4.000
21 C -0.129 4.129
22 C 0.001 3.999
23 C -0.051 4.051
24 N -0.229 5.229
25 N -0.032 5.032
26 N -0.481 5.481
27 H 0.457 0.543
28 C 0.124 3.876
29 C 0.035 3.965
30 O -0.368 6.368
31 H 0.249 0.751
32 H 0.044 0.956
33 H 0.072 0.928
34 H 0.051 0.949
35 H 0.041 0.959
36 H 0.112 0.888
37 H 0.110 0.890
38 H 0.419 0.581
39 H 0.180 0.820
40 H 0.191 0.809
41 H 0.171 0.829
42 H 0.088 0.912
43 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.987 -22.312 2.263 25.916
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.600 5.600
2 C -0.261 4.261
3 Si 0.806 3.194
4 H -0.193 1.193
5 H -0.215 1.215
6 H -0.220 1.220
7 C -0.362 4.362
8 H 0.097 0.903
9 N -0.369 5.369
10 C -0.025 4.025
11 C 0.037 3.963
12 C 0.049 3.951
13 C -0.167 4.167
14 C 0.024 3.976
15 H 0.122 0.878
16 N -0.347 5.347
17 C 0.353 3.647
18 O -0.463 6.463
19 C -0.174 4.174
20 C -0.022 4.022
21 C -0.150 4.150
22 C -0.022 4.022
23 C -0.176 4.176
24 N -0.108 5.108
25 N -0.013 5.013
26 N -0.205 5.205
27 H 0.307 0.693
28 C -0.002 4.002
29 C -0.043 4.043
30 O -0.287 6.287
31 H 0.058 0.942
32 H 0.063 0.937
33 H 0.089 0.911
34 H 0.068 0.932
35 H 0.060 0.940
36 H 0.130 0.870
37 H 0.128 0.872
38 H 0.259 0.741
39 H 0.197 0.803
40 H 0.209 0.791
41 H 0.188 0.812
42 H 0.106 0.894
43 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -11.763 -23.475 3.177 26.448
hybrid contribution 1.070 2.142 -0.422 2.431
sum -10.693 -21.332 2.755 24.021
Atomic orbital electron populations
1.69984 1.06254 1.25548 1.58255 1.25599 0.96682 1.00739 1.03045
0.85020 0.78087 0.79468 0.76811 1.19252 1.21510 1.22001 1.19395
0.90690 0.83504 1.42618 0.90331 1.46294 1.03661 1.00493 1.86435
1.23162 0.96363 0.84355 0.98571 1.23383 0.95782 0.95873 0.81287
1.22084 0.87199 0.89203 0.96639 1.23121 1.03012 0.91188 0.99396
1.22208 0.89876 0.91684 0.93872 0.87841 1.45746 1.10578 1.15874
1.62468 1.18290 0.88292 0.81489 0.76616 1.90721 1.25547 1.73988
1.56059 1.18895 0.95174 0.92565 1.10810 1.21981 0.89060 1.00378
0.90770 1.21498 1.01385 0.92641 0.99460 1.21195 0.93098 0.95915
0.91945 1.20475 0.96319 0.92075 1.08760 1.74827 1.02610 1.19540
1.13862 1.81580 1.04910 1.00851 1.13933 1.47944 1.10136 1.13080
1.49342 0.69300 1.19388 0.87859 0.94439 0.98541 1.23733 1.01012
0.81053 0.98524 1.88837 1.93170 1.25544 1.21168 0.94186 0.93743
0.91097 0.93184 0.94017 0.87002 0.87194 0.74099 0.80298 0.79147
0.81157 0.89374 0.92474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -57.43 11.40 21.65 0.25 -57.19 16
2 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16
3 Si 0.98 46.35 29.55 68.60 2.03 48.38 16
4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16
6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16
7 C -0.23 -13.42 10.70 84.03 0.90 -12.52 16
8 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16
9 N -0.64 -33.25 3.71 -744.76 -2.76 -36.01 16
10 C 0.10 3.94 8.49 86.03 0.73 4.67 16
11 C 0.08 2.72 1.28 -10.64 -0.01 2.70 16
12 C 0.17 7.94 7.05 86.04 0.61 8.55 16
13 C -0.13 -2.77 6.21 31.56 0.20 -2.57 16
14 C 0.13 2.67 3.35 46.08 0.15 2.83 16
15 H 0.10 2.25 7.66 -2.39 -0.02 2.23 16
16 N -0.69 -10.35 5.00 -440.54 -2.20 -12.55 16
17 C 0.56 10.63 7.76 86.69 0.67 11.30 16
18 O -0.58 -15.04 14.99 -4.00 -0.06 -15.10 16
19 C -0.17 -2.49 5.88 -20.06 -0.12 -2.61 16
20 C 0.00 0.00 9.53 22.56 0.22 0.22 16
21 C -0.13 -0.45 9.98 22.18 0.22 -0.23 16
22 C 0.00 0.00 10.09 22.58 0.23 0.23 16
23 C -0.05 -0.93 7.26 39.58 0.29 -0.65 16
24 N -0.23 -5.30 12.40 -52.19 -0.65 -5.95 16
25 N -0.03 -0.77 13.83 37.02 0.51 -0.26 16
26 N -0.48 -10.63 7.32 -51.10 -0.37 -11.01 16
27 H 0.46 9.52 7.72 -213.22 -1.65 7.87 16
28 C 0.12 2.43 6.93 39.41 0.27 2.71 16
29 C 0.03 0.95 7.51 72.38 0.54 1.49 16
30 O -0.37 -13.85 11.35 -148.98 -1.69 -15.54 16
31 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16
32 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16
33 H 0.07 2.42 8.00 -2.39 -0.02 2.40 16
34 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16
35 H 0.04 2.22 7.20 -2.39 -0.02 2.21 16
36 H 0.11 2.02 7.95 -2.39 -0.02 2.00 16
37 H 0.11 1.86 7.75 -2.39 -0.02 1.84 16
38 H 0.42 3.34 6.38 -92.71 -0.59 2.75 16
39 H 0.18 -0.21 6.39 -2.91 -0.02 -0.22 16
40 H 0.19 -0.86 8.06 -2.91 -0.02 -0.88 16
41 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16
42 H 0.09 2.25 7.93 -2.39 -0.02 2.23 16
43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16
Total: -1.00 -82.50 362.07 -0.73 -83.23
By element:
Atomic # 1 Polarization: 10.45 SS G_CDS: -1.15 Total: 9.31 kcal
Atomic # 6 Polarization: 7.32 SS G_CDS: 5.36 Total: 12.68 kcal
Atomic # 7 Polarization: -117.74 SS G_CDS: -5.23 Total: -122.96 kcal
Atomic # 8 Polarization: -28.89 SS G_CDS: -1.75 Total: -30.64 kcal
Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal
Total: -82.50 -0.73 -83.23 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001053814575.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 156.606 kcal
(2) G-P(sol) polarization free energy of solvation -82.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.730 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.371 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds