Wall clock time and date at job start Sat Apr 11 2020 06:50:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86797 * 120.00107 * 2 1
4 4 H 1.48499 * 109.47497 * 275.00081 * 3 2 1
5 5 H 1.48502 * 109.47182 * 35.00101 * 3 2 1
6 6 H 1.48496 * 109.47338 * 154.99980 * 3 2 1
7 7 C 1.38810 * 120.00266 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00605 * 174.89033 * 7 2 1
9 9 N 1.36940 * 119.99903 * 354.89511 * 7 2 1
10 10 C 1.46708 * 125.32612 * 184.99903 * 9 7 2
11 11 C 1.54043 * 106.83230 * 161.81453 * 10 9 7
12 12 H 1.08992 * 113.43359 * 262.67908 * 11 10 9
13 13 C 1.55121 * 108.25874 * 135.80601 * 11 10 9
14 14 C 1.54853 * 101.77943 * 286.09673 * 13 11 10
15 15 N 1.47399 * 104.80786 * 322.81370 * 14 13 11
16 16 C 1.34778 * 125.58701 * 204.61166 * 15 14 13
17 17 O 1.21651 * 119.99905 * 184.25206 * 16 15 14
18 18 C 1.47204 * 120.00277 * 4.24362 * 16 15 14
19 19 C 1.38844 * 120.90321 * 324.46678 * 18 16 15
20 20 C 1.39926 * 119.43167 * 180.02562 * 19 18 16
21 21 C 1.35021 * 121.27111 * 359.97438 * 20 19 18
22 22 N 1.36258 * 121.58168 * 0.03613 * 21 20 19
23 23 C 1.36366 * 133.88518 * 179.97438 * 22 21 20
24 24 O 1.35718 * 126.33096 * 359.96393 * 23 22 21
25 25 N 1.31101 * 107.33565 * 180.22603 * 23 22 21
26 26 N 1.28695 * 110.30726 * 359.61238 * 25 23 22
27 27 C 1.31473 * 109.67328 * 0.39246 * 26 25 23
28 28 C 1.46732 * 108.82518 * 24.87113 * 15 14 13
29 29 H 1.08995 * 111.33236 * 235.86158 * 28 15 14
30 30 C 1.46636 * 125.32092 * 4.99599 * 9 7 2
31 31 H 0.97003 * 120.00094 * 359.97438 * 1 2 3
32 32 H 1.09007 * 109.98147 * 42.47663 * 10 9 7
33 33 H 1.08996 * 109.98722 * 281.16722 * 10 9 7
34 34 H 1.08998 * 110.96947 * 167.97314 * 13 11 10
35 35 H 1.09002 * 110.99648 * 44.22809 * 13 11 10
36 36 H 1.08998 * 110.37007 * 203.98648 * 14 13 11
37 37 H 1.08999 * 110.37515 * 81.64759 * 14 13 11
38 38 H 1.08005 * 120.28419 * 0.03898 * 19 18 16
39 39 H 1.07995 * 119.36755 * 179.97438 * 20 19 18
40 40 H 1.08004 * 119.21033 * 180.02562 * 21 20 19
41 41 H 0.96698 * 114.00405 * 90.00274 * 24 23 22
42 42 H 1.09006 * 109.75817 * 300.92923 * 30 9 7
43 43 H 1.08993 * 109.75450 * 61.63315 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.3920 2.1075 -1.3947
5 1 1.5045 2.6198 0.8031
6 1 3.5965 1.4120 0.5917
7 6 2.0103 -1.2021 -0.0005
8 1 3.0870 -1.2040 -0.0838
9 7 1.3297 -2.3857 0.1045
10 6 1.9467 -3.7117 0.2201
11 6 0.8641 -4.6613 0.7670
12 1 0.9248 -4.8130 1.8446
13 6 0.9191 -5.9809 -0.0465
14 6 0.2871 -5.5490 -1.3926
15 7 -0.7837 -4.6067 -1.0209
16 6 -1.8783 -4.3329 -1.7580
17 8 -2.6617 -3.4784 -1.3893
18 6 -2.1259 -5.0678 -3.0092
19 6 -1.0744 -5.4523 -3.8304
20 6 -1.3450 -6.1493 -5.0131
21 6 -2.6099 -6.4563 -5.3720
22 7 -3.6763 -6.1017 -4.6014
23 6 -5.0241 -6.2749 -4.7154
24 8 -5.6710 -6.9047 -5.7287
25 7 -5.5798 -5.7155 -3.6679
26 7 -4.6785 -5.2107 -2.9004
27 6 -3.4888 -5.4132 -3.4220
28 6 -0.4595 -4.0109 0.2803
29 1 -1.2645 -4.1654 0.9987
30 6 -0.1299 -2.5260 0.1190
31 1 -0.4850 0.8401 0.0004
32 1 2.7899 -3.6713 0.9098
33 1 2.2819 -4.0533 -0.7592
34 1 0.3242 -6.7591 0.4317
35 1 1.9485 -6.3106 -0.1870
36 1 -0.1304 -6.4126 -1.9102
37 1 1.0290 -5.0527 -2.0182
38 1 -0.0563 -5.2156 -3.5585
39 1 -0.5264 -6.4474 -5.6513
40 1 -2.7806 -6.9957 -6.2920
41 1 -5.7971 -7.8527 -5.5858
42 1 -0.5461 -1.9615 0.9534
43 1 -0.5448 -2.1570 -0.8189
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001076455386.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:53
Heat of formation + Delta-G solvation = 102.050794 kcal
Electronic energy + Delta-G solvation = -30424.126369 eV
Core-core repulsion = 26280.787457 eV
Total energy + Delta-G solvation = -4143.338912 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.143 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-43.72947 -40.38658 -38.55536 -37.98111 -37.61925 -34.92909 -33.88305 -32.15670
-31.34292 -30.91803 -29.50715 -28.52659 -26.59891 -25.13590 -24.78363 -23.67459
-23.26824 -22.40831 -20.96038 -20.12895 -19.49743 -18.67834 -18.38518 -17.57569
-17.20764 -16.73806 -16.34796 -15.96062 -15.82015 -15.12921 -14.89491 -14.62097
-14.11994 -13.80664 -13.59198 -13.36940 -13.18580 -12.89948 -12.81882 -12.68060
-12.32352 -12.16857 -11.97281 -11.91533 -11.59317 -11.30288 -11.02464 -10.99070
-10.72832 -10.64427 -10.46008 -10.25150 -10.15722 -9.89306 -9.85806 -9.70524
-9.54682 -8.54261 -8.38988 -8.22377 -6.78607 -5.65148 -3.01351 -0.01109
0.70862 1.53321 2.27397 2.62243 3.05858 3.32920 3.36906 3.42703
3.47422 3.50802 3.74009 3.98322 4.30109 4.36902 4.50737 4.52556
4.69806 4.86672 5.05081 5.09043 5.16292 5.34722 5.45591 5.48902
5.51561 5.52718 5.56142 5.68854 5.71433 5.81775 5.83711 5.97991
6.14753 6.19401 6.31953 6.45060 6.53200 6.61900 6.83320 6.88506
7.58338 7.65978 7.84733 7.94281 8.26736 8.32228 8.47045 9.26053
9.87367 10.50631 11.44499
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.015602 B = 0.003194 C = 0.002965
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1794.266192 B = 8764.106496 C = 9440.632933
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C -0.004 4.004
3 Si 0.909 3.091
4 H -0.290 1.290
5 H -0.290 1.290
6 H -0.281 1.281
7 C -0.237 4.237
8 H 0.077 0.923
9 N -0.602 5.602
10 C 0.142 3.858
11 C -0.110 4.110
12 H 0.100 0.900
13 C -0.124 4.124
14 C 0.092 3.908
15 N -0.596 5.596
16 C 0.573 3.427
17 O -0.492 6.492
18 C -0.066 4.066
19 C -0.058 4.058
20 C -0.136 4.136
21 C 0.079 3.921
22 N -0.405 5.405
23 C 0.310 3.690
24 O -0.427 6.427
25 N -0.238 5.238
26 N -0.244 5.244
27 C 0.235 3.765
28 C 0.119 3.881
29 H 0.082 0.918
30 C 0.173 3.827
31 H 0.254 0.746
32 H 0.035 0.965
33 H 0.017 0.983
34 H 0.072 0.928
35 H 0.084 0.916
36 H 0.072 0.928
37 H 0.075 0.925
38 H 0.162 0.838
39 H 0.164 0.836
40 H 0.172 0.828
41 H 0.403 0.597
42 H 0.058 0.942
43 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.287 -22.099 -10.784 24.591
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.201 4.201
3 Si 0.739 3.261
4 H -0.218 1.218
5 H -0.216 1.216
6 H -0.207 1.207
7 C -0.365 4.365
8 H 0.095 0.905
9 N -0.329 5.329
10 C 0.016 3.984
11 C -0.130 4.130
12 H 0.118 0.882
13 C -0.163 4.163
14 C -0.031 4.031
15 N -0.330 5.330
16 C 0.359 3.641
17 O -0.365 6.365
18 C -0.073 4.073
19 C -0.082 4.082
20 C -0.158 4.158
21 C -0.043 4.043
22 N -0.098 5.098
23 C 0.011 3.989
24 O -0.226 6.226
25 N -0.088 5.088
26 N -0.090 5.090
27 C -0.017 4.017
28 C 0.016 3.984
29 H 0.100 0.900
30 C 0.048 3.952
31 H 0.064 0.936
32 H 0.053 0.947
33 H 0.034 0.966
34 H 0.091 0.909
35 H 0.102 0.898
36 H 0.090 0.910
37 H 0.093 0.907
38 H 0.180 0.820
39 H 0.181 0.819
40 H 0.189 0.811
41 H 0.260 0.740
42 H 0.076 0.924
43 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -2.261 -20.431 -10.041 22.877
hybrid contribution 1.396 -0.097 -1.142 1.806
sum -0.865 -20.528 -11.183 23.392
Atomic orbital electron populations
1.69993 1.04771 1.25181 1.55821 1.24865 0.95657 0.97706 1.01908
0.86159 0.78623 0.83850 0.77429 1.21751 1.21617 1.20663 1.18969
0.90675 0.82371 1.44469 0.90491 1.44230 1.01408 1.00664 1.86607
1.21304 0.93961 0.86346 0.96819 1.23168 0.95716 0.94239 0.99844
0.88174 1.22766 1.01183 0.97425 0.94888 1.22598 0.90002 0.92246
0.98206 1.48221 1.20486 1.43077 1.21228 1.16965 0.81248 0.83289
0.82574 1.90953 1.45288 1.30799 1.69458 1.20204 0.87086 1.01780
0.98205 1.22142 0.99994 0.93419 0.92644 1.20830 0.95675 1.01003
0.98297 1.21696 0.85513 1.00326 0.96812 1.44043 1.07480 1.39471
1.18817 1.21754 0.77539 1.05730 0.93913 1.85027 1.73636 1.27360
1.36549 1.74703 1.23923 1.10743 0.99394 1.74993 0.94002 1.18956
1.21034 1.22597 0.96025 0.98589 0.84532 1.22560 0.96065 0.97019
0.82792 0.90042 1.21176 0.84329 0.87343 1.02369 0.93566 0.94671
0.96587 0.90923 0.89783 0.90963 0.90693 0.82018 0.81901 0.81123
0.74010 0.92411 0.92870
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.76 10.27 55.49 0.57 -27.19 16
2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16
3 Si 0.91 22.36 29.56 -169.99 -5.02 17.33 16
4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16
6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
7 C -0.24 -6.55 10.24 -15.06 -0.15 -6.70 16
8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16
9 N -0.60 -15.07 3.38 -172.35 -0.58 -15.65 16
10 C 0.14 2.69 6.45 -3.38 -0.02 2.66 16
11 C -0.11 -1.70 4.35 -87.73 -0.38 -2.08 16
12 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16
13 C -0.12 -1.37 6.35 -24.63 -0.16 -1.52 16
14 C 0.09 1.09 4.66 -2.57 -0.01 1.08 16
15 N -0.60 -10.07 2.99 -164.05 -0.49 -10.56 16
16 C 0.57 10.88 7.18 -12.62 -0.09 10.79 16
17 O -0.49 -11.84 16.60 5.23 0.09 -11.75 16
18 C -0.07 -0.98 5.70 -102.69 -0.59 -1.56 16
19 C -0.06 -0.58 8.00 -38.73 -0.31 -0.89 16
20 C -0.14 -0.89 9.91 -40.09 -0.40 -1.29 16
21 C 0.08 0.57 10.94 -16.73 -0.18 0.39 16
22 N -0.41 -4.81 2.97 -62.51 -0.19 -5.00 16
23 C 0.31 3.90 9.41 -88.65 -0.83 3.06 16
24 O -0.43 -3.58 13.65 -18.86 -0.26 -3.84 16
25 N -0.24 -3.95 12.20 29.70 0.36 -3.59 16
26 N -0.24 -4.58 12.23 32.37 0.40 -4.19 16
27 C 0.23 3.73 7.80 -153.91 -1.20 2.53 16
28 C 0.12 2.26 3.57 -66.61 -0.24 2.02 16
29 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16
30 C 0.17 4.33 4.89 -3.99 -0.02 4.31 16
31 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16
32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
33 H 0.02 0.30 6.52 -51.93 -0.34 -0.04 16
34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
35 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16
36 H 0.07 0.65 6.52 -51.93 -0.34 0.31 16
37 H 0.08 0.88 6.35 -51.93 -0.33 0.55 16
38 H 0.16 1.40 5.47 -52.48 -0.29 1.11 16
39 H 0.16 0.40 8.06 -52.49 -0.42 -0.03 16
40 H 0.17 0.56 8.06 -52.48 -0.42 0.14 16
41 H 0.40 0.99 9.06 45.56 0.41 1.41 16
42 H 0.06 1.65 7.19 -51.93 -0.37 1.27 16
43 H 0.05 1.55 6.68 -51.93 -0.35 1.20 16
LS Contribution 350.80 15.07 5.29 5.29
Total: -1.00 -39.98 350.80 -8.62 -48.60
By element:
Atomic # 1 Polarization: 2.05 SS G_CDS: -4.10 Total: -2.06 kcal
Atomic # 6 Polarization: 17.28 SS G_CDS: -4.68 Total: 12.60 kcal
Atomic # 7 Polarization: -66.25 SS G_CDS: 0.07 Total: -66.18 kcal
Atomic # 8 Polarization: -15.42 SS G_CDS: -0.17 Total: -15.59 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -39.98 -8.62 -48.60 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001076455386.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.654 kcal
(2) G-P(sol) polarization free energy of solvation -39.982 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.603 kcal
(6) G-S(sol) free energy of system = (1) + (5) 102.051 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds