Wall clock time and date at job start Sat Apr 11 2020 06:50:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31616 * 1
3 3 Si 1.86797 * 120.00107 * 2 1
4 4 H 1.48499 * 109.47497 * 275.00081 * 3 2 1
5 5 H 1.48502 * 109.47182 * 35.00101 * 3 2 1
6 6 H 1.48496 * 109.47338 * 154.99980 * 3 2 1
7 7 C 1.38810 * 120.00266 * 180.02562 * 2 1 3
8 8 H 1.07997 * 120.00605 * 174.89033 * 7 2 1
9 9 N 1.36940 * 119.99903 * 354.89511 * 7 2 1
10 10 C 1.46708 * 125.32612 * 184.99903 * 9 7 2
11 11 C 1.54043 * 106.83230 * 161.81453 * 10 9 7
12 12 H 1.08992 * 113.43359 * 262.67908 * 11 10 9
13 13 C 1.55121 * 108.25874 * 135.80601 * 11 10 9
14 14 C 1.54853 * 101.77943 * 286.09673 * 13 11 10
15 15 N 1.47399 * 104.80786 * 322.81370 * 14 13 11
16 16 C 1.34778 * 125.58701 * 204.61166 * 15 14 13
17 17 O 1.21651 * 119.99905 * 184.25206 * 16 15 14
18 18 C 1.47204 * 120.00277 * 4.24362 * 16 15 14
19 19 C 1.38844 * 120.90321 * 324.46678 * 18 16 15
20 20 C 1.39926 * 119.43167 * 180.02562 * 19 18 16
21 21 C 1.35021 * 121.27111 * 359.97438 * 20 19 18
22 22 N 1.36258 * 121.58168 * 0.03613 * 21 20 19
23 23 C 1.36366 * 133.88518 * 179.97438 * 22 21 20
24 24 O 1.35718 * 126.33096 * 359.96393 * 23 22 21
25 25 N 1.31101 * 107.33565 * 180.22603 * 23 22 21
26 26 N 1.28695 * 110.30726 * 359.61238 * 25 23 22
27 27 C 1.31473 * 109.67328 * 0.39246 * 26 25 23
28 28 C 1.46732 * 108.82518 * 24.87113 * 15 14 13
29 29 H 1.08995 * 111.33236 * 235.86158 * 28 15 14
30 30 C 1.46636 * 125.32092 * 4.99599 * 9 7 2
31 31 H 0.97003 * 120.00094 * 359.97438 * 1 2 3
32 32 H 1.09007 * 109.98147 * 42.47663 * 10 9 7
33 33 H 1.08996 * 109.98722 * 281.16722 * 10 9 7
34 34 H 1.08998 * 110.96947 * 167.97314 * 13 11 10
35 35 H 1.09002 * 110.99648 * 44.22809 * 13 11 10
36 36 H 1.08998 * 110.37007 * 203.98648 * 14 13 11
37 37 H 1.08999 * 110.37515 * 81.64759 * 14 13 11
38 38 H 1.08005 * 120.28419 * 0.03898 * 19 18 16
39 39 H 1.07995 * 119.36755 * 179.97438 * 20 19 18
40 40 H 1.08004 * 119.21033 * 180.02562 * 21 20 19
41 41 H 0.96698 * 114.00405 * 90.00274 * 24 23 22
42 42 H 1.09006 * 109.75817 * 300.92923 * 30 9 7
43 43 H 1.08993 * 109.75450 * 61.63315 * 30 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.3920 2.1075 -1.3947
5 1 1.5045 2.6198 0.8031
6 1 3.5965 1.4120 0.5917
7 6 2.0103 -1.2021 -0.0005
8 1 3.0870 -1.2040 -0.0838
9 7 1.3297 -2.3857 0.1045
10 6 1.9467 -3.7117 0.2201
11 6 0.8641 -4.6613 0.7670
12 1 0.9248 -4.8130 1.8446
13 6 0.9191 -5.9809 -0.0465
14 6 0.2871 -5.5490 -1.3926
15 7 -0.7837 -4.6067 -1.0209
16 6 -1.8783 -4.3329 -1.7580
17 8 -2.6617 -3.4784 -1.3893
18 6 -2.1259 -5.0678 -3.0092
19 6 -1.0744 -5.4523 -3.8304
20 6 -1.3450 -6.1493 -5.0131
21 6 -2.6099 -6.4563 -5.3720
22 7 -3.6763 -6.1017 -4.6014
23 6 -5.0241 -6.2749 -4.7154
24 8 -5.6710 -6.9047 -5.7287
25 7 -5.5798 -5.7155 -3.6679
26 7 -4.6785 -5.2107 -2.9004
27 6 -3.4888 -5.4132 -3.4220
28 6 -0.4595 -4.0109 0.2803
29 1 -1.2645 -4.1654 0.9987
30 6 -0.1299 -2.5260 0.1190
31 1 -0.4850 0.8401 0.0004
32 1 2.7899 -3.6713 0.9098
33 1 2.2819 -4.0533 -0.7592
34 1 0.3242 -6.7591 0.4317
35 1 1.9485 -6.3106 -0.1870
36 1 -0.1304 -6.4126 -1.9102
37 1 1.0290 -5.0527 -2.0182
38 1 -0.0563 -5.2156 -3.5585
39 1 -0.5264 -6.4474 -5.6513
40 1 -2.7806 -6.9957 -6.2920
41 1 -5.7971 -7.8527 -5.5858
42 1 -0.5461 -1.9615 0.9534
43 1 -0.5448 -2.1570 -0.8189
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001076455386.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:52
Heat of formation + Delta-G solvation = 68.009510 kcal
Electronic energy + Delta-G solvation = -30425.602510 eV
Core-core repulsion = 26280.787457 eV
Total energy + Delta-G solvation = -4144.815053 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.143 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-44.68365 -41.72371 -39.62671 -38.87650 -38.74858 -36.58220 -34.96975 -33.78755
-32.47549 -32.21411 -30.84621 -29.85868 -28.05144 -26.62234 -26.14094 -24.64247
-24.32637 -23.47205 -22.55630 -21.31162 -20.71487 -19.77951 -19.40516 -18.84149
-18.38982 -18.21762 -17.48769 -17.13750 -16.80672 -16.47350 -16.04668 -15.91299
-15.60526 -15.45906 -14.68686 -14.62610 -14.36763 -14.00188 -13.90463 -13.75895
-13.69545 -13.46861 -13.20393 -12.99953 -12.97227 -12.82859 -12.77596 -12.37865
-12.25437 -12.06735 -11.83469 -11.75850 -11.60791 -11.55772 -11.37843 -11.01400
-10.75568 -10.69334 -9.67718 -9.25780 -8.87010 -7.82320 -5.20497 -0.83291
-0.12083 0.65193 1.37563 1.43091 1.45934 1.55369 1.55793 1.87267
2.25553 2.49576 2.52020 2.95114 3.09737 3.33800 3.38785 3.58583
3.65594 3.69704 3.76228 3.82945 4.04181 4.26085 4.27921 4.38087
4.48435 4.55156 4.58811 4.67028 4.69653 4.75497 4.87475 4.88669
4.96926 5.12325 5.14585 5.22412 5.32094 5.44564 5.49774 5.56740
5.65569 5.81159 6.20771 6.30670 6.51982 7.08306 7.13701 7.26412
7.81473 8.43627 9.26082
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.015602 B = 0.003194 C = 0.002965
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1794.266192 B = 8764.106496 C = 9440.632933
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.953 5.953
2 C -0.074 4.074
3 Si 0.978 3.022
4 H -0.289 1.289
5 H -0.302 1.302
6 H -0.258 1.258
7 C -0.237 4.237
8 H 0.093 0.907
9 N -0.623 5.623
10 C 0.135 3.865
11 C -0.097 4.097
12 H 0.115 0.885
13 C -0.106 4.106
14 C 0.083 3.917
15 N -0.595 5.595
16 C 0.565 3.435
17 O -0.572 6.572
18 C -0.126 4.126
19 C -0.010 4.010
20 C -0.131 4.131
21 C 0.094 3.906
22 N -0.404 5.404
23 C 0.333 3.667
24 O -0.418 6.418
25 N -0.289 5.289
26 N -0.318 5.318
27 C 0.226 3.774
28 C 0.120 3.880
29 H 0.066 0.934
30 C 0.194 3.806
31 H 0.241 0.759
32 H 0.046 0.954
33 H 0.042 0.958
34 H 0.094 0.906
35 H 0.123 0.877
36 H 0.112 0.888
37 H 0.084 0.916
38 H 0.181 0.819
39 H 0.224 0.776
40 H 0.225 0.775
41 H 0.432 0.568
42 H 0.000 1.000
43 H -0.002 1.002
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.748 -26.749 -14.125 30.480
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.602 5.602
2 C -0.267 4.267
3 Si 0.806 3.194
4 H -0.216 1.216
5 H -0.229 1.229
6 H -0.182 1.182
7 C -0.366 4.366
8 H 0.111 0.889
9 N -0.350 5.350
10 C 0.011 3.989
11 C -0.117 4.117
12 H 0.133 0.867
13 C -0.144 4.144
14 C -0.038 4.038
15 N -0.327 5.327
16 C 0.354 3.646
17 O -0.451 6.451
18 C -0.133 4.133
19 C -0.034 4.034
20 C -0.151 4.151
21 C -0.027 4.027
22 N -0.096 5.096
23 C 0.031 3.969
24 O -0.221 6.221
25 N -0.137 5.137
26 N -0.163 5.163
27 C -0.028 4.028
28 C 0.015 3.985
29 H 0.084 0.916
30 C 0.068 3.932
31 H 0.050 0.950
32 H 0.064 0.936
33 H 0.059 0.941
34 H 0.112 0.888
35 H 0.141 0.859
36 H 0.130 0.870
37 H 0.102 0.898
38 H 0.198 0.802
39 H 0.240 0.760
40 H 0.242 0.758
41 H 0.294 0.706
42 H 0.018 0.982
43 H 0.016 0.984
Dipole moment (debyes) X Y Z Total
from point charges 1.842 -25.196 -13.390 28.592
hybrid contribution 0.224 1.209 -0.299 1.265
sum 2.067 -23.987 -13.689 27.695
Atomic orbital electron populations
1.70321 1.06757 1.24866 1.58300 1.25797 0.96348 1.01598 1.02921
0.85069 0.78029 0.79173 0.77127 1.21621 1.22868 1.18207 1.19494
0.91502 0.83529 1.42063 0.88936 1.44541 1.01530 1.02580 1.86302
1.21633 0.94941 0.83952 0.98390 1.23162 0.91188 0.95912 1.01395
0.86671 1.22828 1.03829 0.94885 0.92818 1.23037 0.88761 0.92430
0.99561 1.48268 1.21221 1.43232 1.20025 1.17763 0.80610 0.82444
0.83758 1.90892 1.47992 1.34286 1.71943 1.19773 0.88224 1.06831
0.98511 1.22598 0.99234 0.89596 0.91993 1.21484 0.97012 0.99483
0.97128 1.22873 0.84534 0.98165 0.97102 1.44183 1.08210 1.39048
1.18199 1.21672 0.77960 1.04185 0.93124 1.85011 1.72902 1.29638
1.34589 1.74501 1.24951 1.12852 1.01379 1.74842 0.95858 1.22016
1.23591 1.22658 0.95629 0.98678 0.85793 1.22230 0.97894 0.93853
0.84538 0.91572 1.20630 0.84490 0.90844 0.97224 0.95022 0.93574
0.94069 0.88780 0.85901 0.87049 0.89799 0.80192 0.75983 0.75831
0.70635 0.98178 0.98395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -62.95 10.27 21.65 0.22 -62.73 16
2 C -0.07 -4.43 5.48 84.86 0.47 -3.96 16
3 Si 0.98 47.64 29.56 68.60 2.03 49.66 16
4 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16
5 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16
6 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16
7 C -0.24 -13.36 10.24 84.03 0.86 -12.50 16
8 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16
9 N -0.62 -32.00 3.38 -699.18 -2.36 -34.36 16
10 C 0.14 4.83 6.45 86.69 0.56 5.39 16
11 C -0.10 -2.81 4.35 -8.92 -0.04 -2.84 16
12 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16
13 C -0.11 -1.79 6.35 31.95 0.20 -1.59 16
14 C 0.08 1.64 4.66 86.84 0.40 2.05 16
15 N -0.59 -20.52 2.99 -791.17 -2.37 -22.89 16
16 C 0.57 23.09 7.18 86.60 0.62 23.71 16
17 O -0.57 -31.20 16.60 -4.19 -0.07 -31.27 16
18 C -0.13 -3.78 5.70 -18.61 -0.11 -3.89 16
19 C -0.01 -0.16 8.00 22.82 0.18 0.02 16
20 C -0.13 -0.83 9.91 21.94 0.22 -0.62 16
21 C 0.09 0.84 10.94 83.26 0.91 1.75 16
22 N -0.40 -8.74 2.97 -462.35 -1.37 -10.11 16
23 C 0.33 8.03 9.41 179.66 1.69 9.72 16
24 O -0.42 -5.81 13.65 -90.40 -1.23 -7.05 16
25 N -0.29 -10.18 12.20 -173.35 -2.11 -12.30 16
26 N -0.32 -13.05 12.23 -51.51 -0.63 -13.68 16
27 C 0.23 7.43 7.80 135.68 1.06 8.48 16
28 C 0.12 4.80 3.57 45.72 0.16 4.96 16
29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16
30 C 0.19 10.58 4.89 86.34 0.42 11.00 16
31 H 0.24 15.73 8.31 -92.71 -0.77 14.96 16
32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16
33 H 0.04 1.31 6.52 -2.39 -0.02 1.29 16
34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
35 H 0.12 1.29 8.08 -2.39 -0.02 1.27 16
36 H 0.11 1.39 6.52 -2.39 -0.02 1.37 16
37 H 0.08 1.55 6.35 -2.39 -0.02 1.54 16
38 H 0.18 2.19 5.47 -2.91 -0.02 2.18 16
39 H 0.22 -1.06 8.06 -2.91 -0.02 -1.09 16
40 H 0.23 -0.37 8.06 -2.91 -0.02 -0.40 16
41 H 0.43 0.56 9.06 -74.06 -0.67 -0.11 16
42 H 0.00 0.00 7.19 -2.38 -0.02 -0.01 16
43 H 0.00 -0.14 6.68 -2.39 -0.02 -0.16 16
Total: -1.00 -107.23 350.80 0.13 -107.10
By element:
Atomic # 1 Polarization: -4.49 SS G_CDS: 0.42 Total: -4.07 kcal
Atomic # 6 Polarization: 34.07 SS G_CDS: 7.61 Total: 41.69 kcal
Atomic # 7 Polarization: -147.44 SS G_CDS: -8.62 Total: -156.07 kcal
Atomic # 8 Polarization: -37.01 SS G_CDS: -1.30 Total: -38.31 kcal
Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal
Total: -107.23 0.13 -107.10 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001076455386.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 175.111 kcal
(2) G-P(sol) polarization free energy of solvation -107.231 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.880 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.102 kcal
(6) G-S(sol) free energy of system = (1) + (5) 68.010 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds