Wall clock time and date at job start Sat Apr 11 2020 06:51:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46497 * 120.00313 * 2 1
4 4 C 1.53005 * 109.47052 * 276.40000 * 3 2 1
5 5 H 1.08999 * 112.96534 * 65.26837 * 4 3 2
6 6 C 1.53947 * 113.76987 * 293.58900 * 4 3 2
7 7 C 1.53946 * 86.28928 * 222.09505 * 6 4 3
8 8 N 1.47579 * 113.76543 * 196.94557 * 4 3 2
9 9 C 1.36932 * 134.49588 * 318.93157 * 8 4 3
10 10 H 1.07997 * 120.00228 * 6.08351 * 9 8 4
11 11 C 1.38821 * 119.99919 * 186.09420 * 9 8 4
12 12 N 1.31613 * 119.99864 * 359.97438 * 11 9 8
13 13 Si 1.86800 * 119.99770 * 179.97438 * 11 9 8
14 14 H 1.48503 * 109.47270 * 59.99784 * 13 11 9
15 15 H 1.48498 * 109.46752 * 179.97438 * 13 11 9
16 16 H 1.48499 * 109.47322 * 299.99480 * 13 11 9
17 17 C 1.34783 * 119.99842 * 179.97438 * 2 1 3
18 18 O 1.21549 * 119.99663 * 184.27544 * 17 2 1
19 19 C 1.47839 * 120.00134 * 4.27595 * 17 2 1
20 20 C 1.39564 * 120.56040 * 308.80761 * 19 17 2
21 21 N 1.31663 * 120.56711 * 180.28226 * 20 19 17
22 22 C 1.31961 * 121.87587 * 359.73875 * 21 20 19
23 23 C 1.38301 * 121.08327 * 0.02562 * 22 21 20
24 24 C 1.38405 * 119.30661 * 359.97438 * 23 22 21
25 25 C 1.50699 * 120.85385 * 179.97438 * 24 23 22
26 26 F 1.39896 * 109.47672 * 359.97438 * 25 24 23
27 27 F 1.39903 * 109.46734 * 239.99819 * 25 24 23
28 28 F 1.39901 * 109.46908 * 120.00039 * 25 24 23
29 29 H 1.08992 * 109.47185 * 271.36617 * 1 2 3
30 30 H 1.09003 * 109.46955 * 31.36906 * 1 2 3
31 31 H 1.09005 * 109.46758 * 151.36594 * 1 2 3
32 32 H 1.09003 * 109.46751 * 36.39681 * 3 2 1
33 33 H 1.08994 * 109.47672 * 156.39918 * 3 2 1
34 34 H 1.08999 * 113.73921 * 336.43849 * 6 4 3
35 35 H 1.08994 * 113.73761 * 107.63643 * 6 4 3
36 36 H 1.08997 * 113.77000 * 137.91159 * 7 6 4
37 37 H 1.08999 * 113.76581 * 269.18905 * 7 6 4
38 38 H 0.97006 * 119.99592 * 180.02562 * 12 11 9
39 39 H 1.08007 * 119.71628 * 0.02567 * 20 19 17
40 40 H 1.08000 * 119.45569 * 179.97438 * 22 21 20
41 41 H 1.08000 * 120.34928 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.3134 1.7907 -1.4336
5 1 1.3496 2.0538 -1.8695
6 6 3.1875 0.9110 -2.3456
7 6 3.7701 2.2281 -2.8895
8 7 3.3478 2.8289 -1.6067
9 6 3.7529 3.9119 -0.8731
10 1 3.3343 4.0874 0.1069
11 6 4.7015 4.7842 -1.3891
12 7 5.2118 4.5701 -2.5832
13 14 5.2535 6.2620 -0.3886
14 1 5.8498 5.7991 0.8903
15 1 6.2660 7.0296 -1.1571
16 1 4.0840 7.1315 -0.1034
17 6 2.1389 -1.1673 0.0005
18 8 3.3519 -1.1687 0.0790
19 6 1.4028 -2.4459 -0.0944
20 6 0.3377 -2.7170 0.7657
21 7 -0.3145 -3.8579 0.6850
22 6 0.0026 -4.7804 -0.2037
23 6 1.0423 -4.5860 -1.0948
24 6 1.7596 -3.4032 -1.0513
25 6 2.8995 -3.1550 -2.0053
26 9 3.0524 -4.2617 -2.8473
27 9 4.0791 -2.9547 -1.2803
28 9 2.6255 -2.0183 -2.7735
29 1 -0.3633 0.0245 1.0273
30 1 -0.3633 0.8775 -0.5350
31 1 -0.3633 -0.9020 -0.4925
32 1 1.6629 1.9969 0.6098
33 1 3.1948 1.1125 0.4114
34 1 3.9113 0.3014 -1.8046
35 1 2.6198 0.3428 -3.0824
36 1 4.8506 2.2053 -3.0308
37 1 3.2363 2.6202 -3.7552
38 1 5.8750 5.1795 -2.9436
39 1 0.0485 -1.9862 1.5067
40 1 -0.5585 -5.7026 -0.2352
41 1 1.2913 -5.3489 -1.8175
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001085844354.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:51:56
Heat of formation + Delta-G solvation = -94.245139 kcal
Electronic energy + Delta-G solvation = -31608.521880 eV
Core-core repulsion = 26882.521446 eV
Total energy + Delta-G solvation = -4726.000434 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.125 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-51.25277 -48.80977 -48.67040 -42.02009 -40.56062 -39.33786 -36.65141 -34.57609
-34.25073 -32.95055 -29.96765 -29.85156 -28.07424 -27.57600 -25.65859 -25.25494
-24.14599 -23.57112 -21.16092 -20.76657 -19.72160 -19.59242 -19.54314 -18.79877
-18.35418 -17.69746 -17.27294 -17.04605 -16.52370 -16.31568 -15.95089 -15.80496
-15.62433 -15.43852 -15.33408 -15.12572 -14.96079 -14.86165 -14.83611 -14.65880
-14.19733 -14.09447 -13.93304 -13.43620 -13.38060 -13.29646 -13.07675 -12.92590
-12.59288 -12.51981 -12.32206 -11.84638 -11.62768 -11.49830 -11.36502 -11.28526
-10.84806 -10.71528 -10.35141 -9.73382 -8.89872 -7.89248 -5.22541 -0.64780
-0.28264 1.38350 1.43575 1.45119 1.49007 1.54493 1.82277 2.39756
2.48837 2.52119 2.81910 3.08793 3.24360 3.30725 3.36033 3.44366
3.59301 3.70786 3.87621 4.05443 4.17860 4.21874 4.29113 4.35674
4.44283 4.48348 4.63404 4.71498 4.75865 4.82146 4.88575 4.99344
5.06489 5.19417 5.29948 5.40245 5.51609 5.68888 5.92357 6.24200
6.59143 6.90733 6.95786 7.62103 8.58649 9.29060
Molecular weight = 343.12amu
Principal moments of inertia in cm(-1)
A = 0.018648 B = 0.003484 C = 0.003143
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1501.171874 B = 8035.665744 C = 8905.139987
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.064 3.936
2 N -0.593 5.593
3 C 0.130 3.870
4 C 0.136 3.864
5 H 0.062 0.938
6 C -0.129 4.129
7 C 0.160 3.840
8 N -0.626 5.626
9 C -0.230 4.230
10 H 0.090 0.910
11 C -0.071 4.071
12 N -0.958 5.958
13 Si 0.979 3.021
14 H -0.278 1.278
15 H -0.298 1.298
16 H -0.272 1.272
17 C 0.543 3.457
18 O -0.550 6.550
19 C -0.145 4.145
20 C 0.144 3.856
21 N -0.469 5.469
22 C 0.135 3.865
23 C -0.120 4.120
24 C -0.109 4.109
25 C 0.496 3.504
26 F -0.169 7.169
27 F -0.171 7.171
28 F -0.179 7.179
29 H 0.092 0.908
30 H 0.085 0.915
31 H 0.081 0.919
32 H 0.092 0.908
33 H 0.061 0.939
34 H 0.061 0.939
35 H 0.067 0.933
36 H 0.027 0.973
37 H 0.021 0.979
38 H 0.247 0.753
39 H 0.193 0.807
40 H 0.217 0.783
41 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.079 -22.477 4.762 28.628
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 N -0.324 5.324
3 C 0.006 3.994
4 C 0.029 3.971
5 H 0.079 0.921
6 C -0.167 4.167
7 C 0.035 3.965
8 N -0.353 5.353
9 C -0.358 4.358
10 H 0.108 0.892
11 C -0.264 4.264
12 N -0.607 5.607
13 Si 0.807 3.193
14 H -0.204 1.204
15 H -0.224 1.224
16 H -0.197 1.197
17 C 0.330 3.670
18 O -0.428 6.428
19 C -0.150 4.150
20 C -0.013 4.013
21 N -0.177 5.177
22 C -0.022 4.022
23 C -0.139 4.139
24 C -0.119 4.119
25 C 0.441 3.559
26 F -0.150 7.150
27 F -0.153 7.153
28 F -0.160 7.160
29 H 0.110 0.890
30 H 0.104 0.896
31 H 0.100 0.900
32 H 0.110 0.890
33 H 0.079 0.921
34 H 0.080 0.920
35 H 0.086 0.914
36 H 0.045 0.955
37 H 0.039 0.961
38 H 0.055 0.945
39 H 0.209 0.791
40 H 0.234 0.766
41 H 0.201 0.799
Dipole moment (debyes) X Y Z Total
from point charges -16.943 -22.306 5.431 28.533
hybrid contribution 1.935 1.564 -0.854 2.631
sum -15.007 -20.742 4.578 26.008
Atomic orbital electron populations
1.22321 0.76571 1.04611 1.04240 1.47699 1.08649 1.04537 1.71552
1.21461 0.97210 0.83824 0.96946 1.22650 0.92658 0.87219 0.94539
0.92114 1.23472 0.98856 0.95700 0.98690 1.22041 0.97256 0.88816
0.88394 1.46298 1.37423 1.29898 1.21672 1.19406 1.18396 0.99959
0.98007 0.89204 1.25692 1.00748 1.02030 0.97932 1.70041 1.32666
1.39447 1.18531 0.85146 0.77642 0.79060 0.77461 1.20385 1.22413
1.19737 1.18511 0.86961 0.84304 0.77241 1.90910 1.14799 1.87241
1.49841 1.20691 0.99715 0.94946 0.99649 1.23404 0.87772 0.94873
0.95299 1.67895 1.27617 1.01351 1.20830 1.23794 0.92424 0.98694
0.87285 1.22427 0.95101 0.95247 1.01166 1.20537 0.96599 0.97918
0.96839 1.18474 0.83081 0.74349 0.79954 1.93172 1.96109 1.52895
1.72863 1.93320 1.49965 1.94685 1.77283 1.93246 1.93686 1.52003
1.77052 0.88960 0.89616 0.90024 0.89015 0.92090 0.91983 0.91440
0.95451 0.96115 0.94453 0.79067 0.76612 0.79936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.00 9.16 127.77 1.17 2.17 16
2 N -0.59 -15.81 2.80 -850.19 -2.38 -18.19 16
3 C 0.13 4.52 5.43 86.38 0.47 4.99 16
4 C 0.14 5.57 4.56 45.10 0.21 5.78 16
5 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16
6 C -0.13 -5.57 6.96 31.25 0.22 -5.35 16
7 C 0.16 8.42 7.38 86.44 0.64 9.06 16
8 N -0.63 -33.35 3.58 -690.84 -2.47 -35.82 16
9 C -0.23 -13.10 10.51 84.04 0.88 -12.21 16
10 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16
11 C -0.07 -4.21 5.50 84.87 0.47 -3.74 16
12 N -0.96 -60.62 11.57 21.65 0.25 -60.37 16
13 Si 0.98 47.00 29.55 68.60 2.03 49.02 16
14 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
15 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16
16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
17 C 0.54 16.24 5.84 86.78 0.51 16.75 16
18 O -0.55 -21.83 12.63 -3.87 -0.05 -21.88 16
19 C -0.14 -3.18 4.80 -19.99 -0.10 -3.28 16
20 C 0.14 2.20 8.91 85.04 0.76 2.96 16
21 N -0.47 -6.20 10.35 -194.75 -2.01 -8.21 16
22 C 0.13 1.17 11.17 84.69 0.95 2.12 16
23 C -0.12 -1.43 9.49 22.32 0.21 -1.22 16
24 C -0.11 -2.29 5.43 -19.40 -0.11 -2.40 16
25 C 0.50 13.40 2.87 71.24 0.20 13.61 16
26 F -0.17 -3.81 16.08 44.97 0.72 -3.09 16
27 F -0.17 -5.86 14.66 44.97 0.66 -5.21 16
28 F -0.18 -5.52 15.13 44.97 0.68 -4.84 16
29 H 0.09 0.91 7.56 -2.39 -0.02 0.89 16
30 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16
31 H 0.08 1.08 5.90 -2.38 -0.01 1.07 16
32 H 0.09 2.83 8.12 -2.39 -0.02 2.81 16
33 H 0.06 2.61 7.19 -2.39 -0.02 2.59 16
34 H 0.06 2.95 6.96 -2.39 -0.02 2.93 16
35 H 0.07 2.60 7.08 -2.39 -0.02 2.58 16
36 H 0.03 1.61 7.46 -2.39 -0.02 1.59 16
37 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16
38 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16
39 H 0.19 2.07 6.76 -2.91 -0.02 2.05 16
40 H 0.22 -0.04 8.06 -2.91 -0.02 -0.07 16
41 H 0.18 1.19 7.26 -2.91 -0.02 1.17 16
Total: -1.00 -80.47 348.54 4.98 -75.49
By element:
Atomic # 1 Polarization: 2.78 SS G_CDS: 1.08 Total: 3.87 kcal
Atomic # 6 Polarization: 22.75 SS G_CDS: 6.48 Total: 29.23 kcal
Atomic # 7 Polarization: -115.97 SS G_CDS: -6.62 Total: -122.59 kcal
Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.88 kcal
Atomic # 9 Polarization: -15.19 SS G_CDS: 2.06 Total: -13.13 kcal
Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.02 kcal
Total: -80.47 4.98 -75.49 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001085844354.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.757 kcal
(2) G-P(sol) polarization free energy of solvation -80.472 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.229 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.488 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.245 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds