Wall clock time and date at job start Sat Apr 11 2020 06:52:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30158 * 118.47518 * 2 1
4 4 S 1.67029 * 116.25812 * 180.02562 * 3 2 1
5 5 O 1.42094 * 105.16341 * 244.82656 * 4 3 2
6 6 O 1.42105 * 105.16282 * 115.17021 * 4 3 2
7 7 N 1.67097 * 115.00043 * 359.97438 * 4 3 2
8 8 C 1.46496 * 122.02880 * 180.02562 * 7 4 3
9 9 C 1.35749 * 115.94047 * 0.27407 * 7 4 3
10 10 C 1.36329 * 122.69985 * 359.41091 * 9 7 4
11 11 C 1.46805 * 116.47661 * 180.32403 * 10 9 7
12 12 O 1.21689 * 120.00305 * 256.87393 * 11 10 9
13 13 N 1.34777 * 120.00020 * 76.87275 * 11 10 9
14 14 C 1.46503 * 120.00264 * 185.50985 * 13 11 10
15 15 C 1.50696 * 109.47168 * 89.99968 * 14 13 11
16 16 H 1.08000 * 120.00181 * 359.97438 * 15 14 13
17 17 C 1.37878 * 119.99779 * 180.02562 * 15 14 13
18 18 N 1.31509 * 120.00084 * 0.02562 * 17 15 14
19 19 Si 1.86805 * 119.99714 * 179.97438 * 17 15 14
20 20 H 1.48495 * 109.47107 * 60.00066 * 19 17 15
21 21 H 1.48500 * 109.46663 * 180.02562 * 19 17 15
22 22 H 1.48500 * 109.47295 * 300.00055 * 19 17 15
23 23 C 1.46502 * 119.99992 * 5.50725 * 13 11 10
24 24 C 1.53005 * 109.47069 * 84.94701 * 23 13 11
25 25 C 1.52998 * 109.46893 * 65.21907 * 24 23 13
26 26 C 1.53002 * 109.47014 * 185.22250 * 24 23 13
27 27 H 1.09001 * 109.46556 * 355.73972 * 1 2 3
28 28 H 1.09000 * 109.46709 * 115.73211 * 1 2 3
29 29 H 1.08995 * 109.47334 * 235.73320 * 1 2 3
30 30 H 1.09001 * 109.47423 * 90.00105 * 8 7 4
31 31 H 1.09004 * 109.47348 * 329.99645 * 8 7 4
32 32 H 1.09006 * 109.47288 * 210.00438 * 8 7 4
33 33 H 1.08005 * 118.65197 * 179.70682 * 9 7 4
34 34 H 1.09006 * 109.47080 * 210.00127 * 14 13 11
35 35 H 1.09001 * 109.46753 * 329.99792 * 14 13 11
36 36 H 0.97002 * 120.00108 * 180.02562 * 18 17 15
37 37 H 1.08998 * 109.47522 * 204.94904 * 23 13 11
38 38 H 1.08994 * 109.47019 * 324.95208 * 23 13 11
39 39 H 1.09005 * 109.47118 * 305.22268 * 24 23 13
40 40 H 1.08996 * 109.47454 * 60.00454 * 25 24 23
41 41 H 1.09006 * 109.46836 * 179.97438 * 25 24 23
42 42 H 1.09001 * 109.47141 * 299.99789 * 25 24 23
43 43 H 1.08996 * 109.47398 * 64.94122 * 26 24 23
44 44 H 1.09003 * 109.46476 * 184.93777 * 26 24 23
45 45 H 1.08999 * 109.46694 * 304.92979 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1276 1.1441 0.0000
4 16 3.7966 1.0795 -0.0007
5 8 4.1911 1.6478 1.2405
6 8 4.1901 1.6483 -1.2421
7 7 4.4437 -0.4611 -0.0006
8 6 5.8896 -0.6965 -0.0006
9 6 3.5482 -1.4813 -0.0058
10 6 2.2001 -1.2780 0.0009
11 6 1.3570 -2.4799 0.0014
12 8 0.8070 -2.8377 -1.0234
13 7 1.1922 -3.1870 1.1369
14 6 0.4513 -4.4506 1.1120
15 6 1.4041 -5.5863 0.8412
16 1 2.4562 -5.3868 0.7012
17 6 0.9324 -6.8800 0.7711
18 7 -0.3490 -7.1227 0.9401
19 14 2.1134 -8.2877 0.4347
20 1 3.1413 -8.3381 1.5052
21 1 1.3622 -9.5684 0.4083
22 1 2.7755 -8.0756 -0.8776
23 6 1.7540 -2.6920 2.3961
24 6 0.7751 -1.7075 3.0392
25 6 -0.5048 -2.4462 3.4352
26 6 1.4153 -1.0923 4.2853
27 1 -0.3632 1.0249 0.0763
28 1 -0.3633 -0.4462 -0.9258
29 1 -0.3634 -0.5786 0.8492
30 1 6.2483 -0.7548 1.0271
31 1 6.3913 0.1235 -0.5145
32 1 6.1053 -1.6333 -0.5144
33 1 3.9188 -2.4957 -0.0108
34 1 -0.0347 -4.6059 2.0752
35 1 -0.3031 -4.4139 0.3261
36 1 -0.6808 -8.0329 0.8911
37 1 1.9237 -3.5297 3.0725
38 1 2.6996 -2.1873 2.1985
39 1 0.5336 -0.9180 2.3274
40 1 -0.2634 -3.2356 4.1469
41 1 -1.2020 -1.7449 3.8937
42 1 -0.9609 -2.8844 2.5474
43 1 2.2776 -0.4933 3.9927
44 1 0.6877 -0.4584 4.7921
45 1 1.7364 -1.8870 4.9587
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362077710.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:11
Heat of formation + Delta-G solvation = -63.921718 kcal
Electronic energy + Delta-G solvation = -30070.019992 eV
Core-core repulsion = 26022.635172 eV
Total energy + Delta-G solvation = -4047.384820 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.140 amu
Computer time = 1.90 seconds
Orbital eigenvalues (eV)
-40.43700 -38.36547 -37.24449 -37.03321 -36.46951 -36.04315 -33.74759 -32.56052
-31.47680 -30.19071 -28.00901 -26.92645 -26.87714 -25.57690 -24.10893 -23.13826
-21.35628 -20.41391 -19.41831 -19.15075 -17.72211 -17.29143 -16.78156 -16.59597
-16.01624 -15.82212 -15.16800 -14.77795 -14.72603 -14.53809 -14.41962 -14.01243
-13.93809 -13.69500 -13.37541 -13.02764 -12.92073 -12.49913 -12.31568 -12.27317
-12.19729 -12.14898 -12.13539 -12.13097 -11.92538 -11.67772 -11.49465 -11.42244
-11.13668 -11.02844 -10.81782 -10.56849 -10.41323 -10.28518 -10.24285 -9.77395
-9.37027 -8.88444 -8.53926 -7.85885 -6.16776 -4.22484 -0.16340 0.11165
1.76434 2.18574 2.99804 3.07474 3.21988 3.28268 3.28913 3.40166
3.73073 3.95465 4.33325 4.46860 4.51596 4.60679 4.87020 4.88972
4.95280 4.97740 5.07759 5.14378 5.17826 5.21278 5.25205 5.38625
5.44471 5.59666 5.72060 5.76128 5.81366 5.96032 6.01472 6.03502
6.08558 6.22971 6.36797 6.43664 6.58475 6.91284 7.27709 7.35406
7.77831 8.08167 8.15647 8.66932 8.84428 9.43015 10.91000
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.013019 B = 0.004221 C = 0.003771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2150.106293 B = 6631.772135 C = 7422.601536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.374 3.626
3 N -0.859 5.859
4 S 2.644 3.356
5 O -0.959 6.959
6 O -0.962 6.962
7 N -0.916 5.916
8 C 0.078 3.922
9 C 0.258 3.742
10 C -0.354 4.354
11 C 0.572 3.428
12 O -0.522 6.522
13 N -0.582 5.582
14 C 0.244 3.756
15 C -0.533 4.533
16 H 0.056 0.944
17 C 0.065 3.935
18 N -0.890 5.890
19 Si 0.896 3.104
20 H -0.277 1.277
21 H -0.286 1.286
22 H -0.277 1.277
23 C 0.113 3.887
24 C -0.120 4.120
25 C -0.147 4.147
26 C -0.146 4.146
27 H 0.096 0.904
28 H 0.114 0.886
29 H 0.105 0.895
30 H 0.085 0.915
31 H 0.089 0.911
32 H 0.096 0.904
33 H 0.179 0.821
34 H 0.042 0.958
35 H 0.047 0.953
36 H 0.265 0.735
37 H 0.090 0.910
38 H 0.057 0.943
39 H 0.067 0.933
40 H 0.057 0.943
41 H 0.048 0.952
42 H 0.067 0.933
43 H 0.051 0.949
44 H 0.056 0.944
45 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.096 10.881 3.819 13.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.201 3.799
3 N -0.700 5.700
4 S 2.653 3.347
5 O -0.940 6.940
6 O -0.943 6.943
7 N -0.727 5.727
8 C -0.065 4.065
9 C 0.124 3.876
10 C -0.372 4.372
11 C 0.355 3.645
12 O -0.398 6.398
13 N -0.312 5.312
14 C 0.125 3.875
15 C -0.572 4.572
16 H 0.074 0.926
17 C -0.138 4.138
18 N -0.529 5.529
19 Si 0.724 3.276
20 H -0.203 1.203
21 H -0.211 1.211
22 H -0.202 1.202
23 C -0.011 4.011
24 C -0.140 4.140
25 C -0.204 4.204
26 C -0.204 4.204
27 H 0.115 0.885
28 H 0.132 0.868
29 H 0.123 0.877
30 H 0.103 0.897
31 H 0.108 0.892
32 H 0.114 0.886
33 H 0.196 0.804
34 H 0.060 0.940
35 H 0.065 0.935
36 H 0.075 0.925
37 H 0.108 0.892
38 H 0.076 0.924
39 H 0.085 0.915
40 H 0.077 0.923
41 H 0.067 0.933
42 H 0.086 0.914
43 H 0.070 0.930
44 H 0.075 0.925
45 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 6.334 12.328 3.289 14.245
hybrid contribution 1.115 -1.720 -0.143 2.055
sum 7.449 10.608 3.146 13.339
Atomic orbital electron populations
1.21533 0.86495 1.05799 1.05970 1.22500 0.99339 0.85046 0.73014
1.76709 1.24695 1.29590 1.39010 1.07482 0.78143 0.73152 0.75955
1.93602 1.82853 1.72877 1.44633 1.93604 1.82956 1.72952 1.44782
1.56185 1.14858 1.26054 1.75639 1.22047 0.74918 1.05047 1.04448
1.21945 0.87385 0.96450 0.81824 1.20693 0.92988 0.97309 1.26177
1.17079 0.81428 0.81464 0.84511 1.90834 1.48154 1.69007 1.31828
1.48271 1.53625 1.23531 1.05814 1.19466 0.91955 0.77190 0.98873
1.21347 0.94461 0.91375 1.50021 0.92592 1.24894 0.95178 0.98714
0.94982 1.69900 1.12733 1.21046 1.49191 0.86598 0.80832 0.81365
0.78840 1.20288 1.21137 1.20228 1.21595 0.94971 0.97825 0.86714
1.21708 0.96907 0.97968 0.97410 1.21883 0.96290 0.99946 1.02299
1.21794 1.00521 1.00611 0.97448 0.88501 0.86794 0.87692 0.89677
0.89248 0.88567 0.80372 0.94004 0.93461 0.92519 0.89175 0.92448
0.91511 0.92341 0.93307 0.91357 0.92961 0.92468 0.92295
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 39.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.60 8.86 36.01 0.32 -1.28 16
2 C 0.37 5.10 6.27 -80.46 -0.50 4.60 16
3 N -0.86 -12.76 11.14 34.71 0.39 -12.38 16
4 S 2.64 39.82 5.86 -107.50 -0.63 39.19 16
5 O -0.96 -16.34 18.09 -57.42 -1.04 -17.38 16
6 O -0.96 -17.08 18.09 -57.42 -1.04 -18.12 16
7 N -0.92 -10.40 3.32 -67.68 -0.23 -10.63 16
8 C 0.08 0.59 10.89 59.84 0.65 1.24 16
9 C 0.26 3.02 8.66 -16.51 -0.14 2.88 16
10 C -0.35 -4.96 4.29 -104.28 -0.45 -5.41 16
11 C 0.57 9.91 5.34 -12.80 -0.07 9.84 16
12 O -0.52 -11.14 16.43 5.20 0.09 -11.06 16
13 N -0.58 -10.15 2.20 -176.55 -0.39 -10.54 16
14 C 0.24 5.44 4.29 -5.19 -0.02 5.42 16
15 C -0.53 -13.31 9.39 -34.44 -0.32 -13.64 16
16 H 0.06 1.36 7.81 -52.49 -0.41 0.95 16
17 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16
18 N -0.89 -24.31 13.29 55.43 0.74 -23.58 16
19 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16
20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16
21 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16
22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
23 C 0.11 1.57 4.65 -4.04 -0.02 1.55 16
24 C -0.12 -1.47 3.09 -90.62 -0.28 -1.75 16
25 C -0.15 -1.88 8.33 37.16 0.31 -1.57 16
26 C -0.15 -1.54 9.19 37.16 0.34 -1.20 16
27 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16
28 H 0.11 1.34 7.93 -51.93 -0.41 0.93 16
29 H 0.11 1.16 5.77 -51.93 -0.30 0.86 16
30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
31 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16
32 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16
33 H 0.18 1.73 7.97 -52.48 -0.42 1.31 16
34 H 0.04 0.94 6.56 -51.93 -0.34 0.60 16
35 H 0.05 1.21 7.35 -51.93 -0.38 0.83 16
36 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16
37 H 0.09 1.30 8.03 -51.93 -0.42 0.88 16
38 H 0.06 0.69 6.05 -51.93 -0.31 0.37 16
39 H 0.07 0.80 4.89 -51.93 -0.25 0.55 16
40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
42 H 0.07 1.02 6.28 -51.93 -0.33 0.69 16
43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
LS Contribution 378.05 15.07 5.70 5.70
Total: -1.00 -34.37 378.05 -8.23 -42.60
By element:
Atomic # 1 Polarization: 5.36 SS G_CDS: -6.50 Total: -1.14 kcal
Atomic # 6 Polarization: 2.56 SS G_CDS: -0.28 Total: 2.28 kcal
Atomic # 7 Polarization: -57.63 SS G_CDS: 0.51 Total: -57.12 kcal
Atomic # 8 Polarization: -44.57 SS G_CDS: -1.99 Total: -46.56 kcal
Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal
Atomic # 16 Polarization: 39.82 SS G_CDS: -0.63 Total: 39.19 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -34.37 -8.23 -42.60 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362077710.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.321 kcal
(2) G-P(sol) polarization free energy of solvation -34.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.696 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.922 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.90 seconds