Wall clock time and date at job start Sat Apr 11 2020 06:52:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30158 * 118.47518 * 2 1
4 4 S 1.67029 * 116.25812 * 180.02562 * 3 2 1
5 5 O 1.42094 * 105.16341 * 244.82656 * 4 3 2
6 6 O 1.42105 * 105.16282 * 115.17021 * 4 3 2
7 7 N 1.67097 * 115.00043 * 359.97438 * 4 3 2
8 8 C 1.46496 * 122.02880 * 180.02562 * 7 4 3
9 9 C 1.35749 * 115.94047 * 0.27407 * 7 4 3
10 10 C 1.36329 * 122.69985 * 359.41091 * 9 7 4
11 11 C 1.46805 * 116.47661 * 180.32403 * 10 9 7
12 12 O 1.21689 * 120.00305 * 256.87393 * 11 10 9
13 13 N 1.34777 * 120.00020 * 76.87275 * 11 10 9
14 14 C 1.46503 * 120.00264 * 185.50985 * 13 11 10
15 15 C 1.50696 * 109.47168 * 89.99968 * 14 13 11
16 16 H 1.08000 * 120.00181 * 359.97438 * 15 14 13
17 17 C 1.37878 * 119.99779 * 180.02562 * 15 14 13
18 18 N 1.31509 * 120.00084 * 0.02562 * 17 15 14
19 19 Si 1.86805 * 119.99714 * 179.97438 * 17 15 14
20 20 H 1.48495 * 109.47107 * 60.00066 * 19 17 15
21 21 H 1.48500 * 109.46663 * 180.02562 * 19 17 15
22 22 H 1.48500 * 109.47295 * 300.00055 * 19 17 15
23 23 C 1.46502 * 119.99992 * 5.50725 * 13 11 10
24 24 C 1.53005 * 109.47069 * 84.94701 * 23 13 11
25 25 C 1.52998 * 109.46893 * 65.21907 * 24 23 13
26 26 C 1.53002 * 109.47014 * 185.22250 * 24 23 13
27 27 H 1.09001 * 109.46556 * 355.73972 * 1 2 3
28 28 H 1.09000 * 109.46709 * 115.73211 * 1 2 3
29 29 H 1.08995 * 109.47334 * 235.73320 * 1 2 3
30 30 H 1.09001 * 109.47423 * 90.00105 * 8 7 4
31 31 H 1.09004 * 109.47348 * 329.99645 * 8 7 4
32 32 H 1.09006 * 109.47288 * 210.00438 * 8 7 4
33 33 H 1.08005 * 118.65197 * 179.70682 * 9 7 4
34 34 H 1.09006 * 109.47080 * 210.00127 * 14 13 11
35 35 H 1.09001 * 109.46753 * 329.99792 * 14 13 11
36 36 H 0.97002 * 120.00108 * 180.02562 * 18 17 15
37 37 H 1.08998 * 109.47522 * 204.94904 * 23 13 11
38 38 H 1.08994 * 109.47019 * 324.95208 * 23 13 11
39 39 H 1.09005 * 109.47118 * 305.22268 * 24 23 13
40 40 H 1.08996 * 109.47454 * 60.00454 * 25 24 23
41 41 H 1.09006 * 109.46836 * 179.97438 * 25 24 23
42 42 H 1.09001 * 109.47141 * 299.99789 * 25 24 23
43 43 H 1.08996 * 109.47398 * 64.94122 * 26 24 23
44 44 H 1.09003 * 109.46476 * 184.93777 * 26 24 23
45 45 H 1.08999 * 109.46694 * 304.92979 * 26 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1276 1.1441 0.0000
4 16 3.7966 1.0795 -0.0007
5 8 4.1911 1.6478 1.2405
6 8 4.1901 1.6483 -1.2421
7 7 4.4437 -0.4611 -0.0006
8 6 5.8896 -0.6965 -0.0006
9 6 3.5482 -1.4813 -0.0058
10 6 2.2001 -1.2780 0.0009
11 6 1.3570 -2.4799 0.0014
12 8 0.8070 -2.8377 -1.0234
13 7 1.1922 -3.1870 1.1369
14 6 0.4513 -4.4506 1.1120
15 6 1.4041 -5.5863 0.8412
16 1 2.4562 -5.3868 0.7012
17 6 0.9324 -6.8800 0.7711
18 7 -0.3490 -7.1227 0.9401
19 14 2.1134 -8.2877 0.4347
20 1 3.1413 -8.3381 1.5052
21 1 1.3622 -9.5684 0.4083
22 1 2.7755 -8.0756 -0.8776
23 6 1.7540 -2.6920 2.3961
24 6 0.7751 -1.7075 3.0392
25 6 -0.5048 -2.4462 3.4352
26 6 1.4153 -1.0923 4.2853
27 1 -0.3632 1.0249 0.0763
28 1 -0.3633 -0.4462 -0.9258
29 1 -0.3634 -0.5786 0.8492
30 1 6.2483 -0.7548 1.0271
31 1 6.3913 0.1235 -0.5145
32 1 6.1053 -1.6333 -0.5144
33 1 3.9188 -2.4957 -0.0108
34 1 -0.0347 -4.6059 2.0752
35 1 -0.3031 -4.4139 0.3261
36 1 -0.6808 -8.0329 0.8911
37 1 1.9237 -3.5297 3.0725
38 1 2.6996 -2.1873 2.1985
39 1 0.5336 -0.9180 2.3274
40 1 -0.2634 -3.2356 4.1469
41 1 -1.2020 -1.7449 3.8937
42 1 -0.9609 -2.8844 2.5474
43 1 2.2776 -0.4933 3.9927
44 1 0.6877 -0.4584 4.7921
45 1 1.7364 -1.8870 4.9587
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362077710.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:11
Heat of formation + Delta-G solvation = -88.517115 kcal
Electronic energy + Delta-G solvation = -30071.086528 eV
Core-core repulsion = 26022.635172 eV
Total energy + Delta-G solvation = -4048.451356 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.140 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-41.66857 -39.55480 -38.49752 -38.08229 -37.73189 -37.28364 -35.33032 -34.14202
-32.64529 -31.17151 -29.55722 -27.94364 -27.81073 -26.85256 -25.23793 -24.72425
-22.54768 -21.51219 -20.64447 -20.23364 -18.85889 -18.55055 -18.44525 -17.89879
-17.34571 -17.06059 -16.32118 -16.21075 -15.85840 -15.72654 -15.61552 -15.10246
-15.01193 -14.80366 -14.52740 -14.29346 -14.01831 -13.87100 -13.61769 -13.55434
-13.41895 -13.37234 -13.20377 -13.09052 -12.95054 -12.91843 -12.88308 -12.63317
-12.53173 -12.40330 -12.11520 -12.08632 -11.77734 -11.51630 -11.49493 -11.36791
-10.80312 -10.52800 -9.96545 -9.37919 -8.12788 -6.25601 -1.28934 -0.91538
0.67050 1.11550 1.45122 1.47611 1.53942 1.69725 1.92403 2.16878
2.45761 2.61077 2.92193 3.18886 3.32318 3.41974 3.78142 3.85337
3.94234 4.05656 4.16655 4.22203 4.25557 4.36626 4.44272 4.51288
4.62375 4.65895 4.71033 4.83700 4.90086 4.91922 5.03813 5.08987
5.10270 5.16952 5.29613 5.33318 5.40653 5.46985 5.53444 5.66896
5.91534 6.16394 6.70709 6.83896 7.29281 7.47573 8.93688
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.013019 B = 0.004221 C = 0.003771
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2150.106293 B = 6631.772135 C = 7422.601536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.375 3.625
3 N -0.872 5.872
4 S 2.653 3.347
5 O -0.982 6.982
6 O -0.995 6.995
7 N -0.903 5.903
8 C 0.059 3.941
9 C 0.284 3.716
10 C -0.373 4.373
11 C 0.581 3.419
12 O -0.569 6.569
13 N -0.580 5.580
14 C 0.262 3.738
15 C -0.540 4.540
16 H 0.063 0.937
17 C 0.013 3.987
18 N -0.926 5.926
19 Si 0.957 3.043
20 H -0.262 1.262
21 H -0.289 1.289
22 H -0.276 1.276
23 C 0.109 3.891
24 C -0.118 4.118
25 C -0.144 4.144
26 C -0.141 4.141
27 H 0.115 0.885
28 H 0.109 0.891
29 H 0.109 0.891
30 H 0.107 0.893
31 H 0.093 0.907
32 H 0.127 0.873
33 H 0.207 0.793
34 H 0.036 0.964
35 H 0.006 0.994
36 H 0.264 0.736
37 H 0.085 0.915
38 H 0.082 0.918
39 H 0.070 0.930
40 H 0.053 0.947
41 H 0.067 0.933
42 H 0.039 0.961
43 H 0.054 0.946
44 H 0.067 0.933
45 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.314 10.998 4.776 14.591
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.204 3.796
3 N -0.714 5.714
4 S 2.662 3.338
5 O -0.963 6.963
6 O -0.976 6.976
7 N -0.715 5.715
8 C -0.082 4.082
9 C 0.148 3.852
10 C -0.391 4.391
11 C 0.366 3.634
12 O -0.448 6.448
13 N -0.309 5.309
14 C 0.141 3.859
15 C -0.579 4.579
16 H 0.081 0.919
17 C -0.186 4.186
18 N -0.566 5.566
19 Si 0.783 3.217
20 H -0.187 1.187
21 H -0.214 1.214
22 H -0.202 1.202
23 C -0.014 4.014
24 C -0.138 4.138
25 C -0.201 4.201
26 C -0.199 4.199
27 H 0.133 0.867
28 H 0.127 0.873
29 H 0.127 0.873
30 H 0.125 0.875
31 H 0.111 0.889
32 H 0.145 0.855
33 H 0.224 0.776
34 H 0.054 0.946
35 H 0.024 0.976
36 H 0.073 0.927
37 H 0.104 0.896
38 H 0.101 0.899
39 H 0.088 0.912
40 H 0.072 0.928
41 H 0.086 0.914
42 H 0.058 0.942
43 H 0.074 0.926
44 H 0.086 0.914
45 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 8.596 12.488 4.281 15.754
hybrid contribution 0.460 -1.769 -0.433 1.878
sum 9.056 10.719 3.848 14.551
Atomic orbital electron populations
1.21612 0.85462 1.07036 1.05824 1.22638 1.00049 0.84653 0.72215
1.76731 1.24162 1.29808 1.40660 1.07035 0.78121 0.73639 0.74961
1.93570 1.83339 1.74128 1.45221 1.93565 1.83580 1.74469 1.45972
1.56044 1.16497 1.24712 1.74229 1.22575 0.72188 1.06856 1.06578
1.22239 0.86617 0.97492 0.78867 1.20300 0.93512 0.95744 1.29505
1.17327 0.80819 0.81781 0.83449 1.90812 1.50068 1.70456 1.33490
1.48133 1.53158 1.22162 1.07458 1.18919 0.91133 0.78992 0.96860
1.21746 0.95085 0.92130 1.48945 0.91914 1.25711 0.96555 1.01361
0.95020 1.70029 1.14517 1.21393 1.50665 0.85620 0.79032 0.78164
0.78890 1.18652 1.21432 1.20181 1.21838 0.96347 0.98206 0.84986
1.21691 0.96196 0.97523 0.98345 1.21833 0.97047 1.00231 1.00982
1.21752 1.00742 1.00873 0.96494 0.86668 0.87256 0.87329 0.87486
0.88885 0.85451 0.77632 0.94621 0.97602 0.92696 0.89612 0.89941
0.91178 0.92817 0.91445 0.94163 0.92645 0.91400 0.91627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.18 8.86 71.24 0.63 -2.55 16
2 C 0.38 9.87 6.27 44.65 0.28 10.15 16
3 N -0.87 -24.95 11.14 -44.10 -0.49 -25.44 16
4 S 2.65 76.00 5.86 -56.49 -0.33 75.67 16
5 O -0.98 -31.95 18.09 -127.77 -2.31 -34.26 16
6 O -0.99 -34.50 18.09 -127.77 -2.31 -36.81 16
7 N -0.90 -17.93 3.32 -368.04 -1.22 -19.15 16
8 C 0.06 0.67 10.89 127.77 1.39 2.06 16
9 C 0.28 5.83 8.66 83.64 0.72 6.56 16
10 C -0.37 -9.90 4.29 -19.64 -0.08 -9.98 16
11 C 0.58 19.93 5.34 86.48 0.46 20.39 16
12 O -0.57 -24.82 16.43 -4.31 -0.07 -24.89 16
13 N -0.58 -20.05 2.20 -830.70 -1.83 -21.88 16
14 C 0.26 11.97 4.29 85.63 0.37 12.34 16
15 C -0.54 -26.96 9.39 25.60 0.24 -26.72 16
16 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16
17 C 0.01 0.67 5.46 84.66 0.46 1.13 16
18 N -0.93 -51.59 13.29 21.45 0.28 -51.31 16
19 Si 0.96 40.73 29.54 68.60 2.03 42.76 16
20 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
21 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16
22 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16
23 C 0.11 2.85 4.65 86.38 0.40 3.25 16
24 C -0.12 -2.70 3.09 -10.79 -0.03 -2.73 16
25 C -0.14 -3.60 8.33 71.98 0.60 -3.00 16
26 C -0.14 -2.60 9.19 71.98 0.66 -1.93 16
27 H 0.11 2.14 8.08 -2.39 -0.02 2.12 16
28 H 0.11 2.62 7.93 -2.39 -0.02 2.60 16
29 H 0.11 2.37 5.77 -2.39 -0.01 2.36 16
30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16
31 H 0.09 1.06 8.10 -2.38 -0.02 1.04 16
32 H 0.13 0.71 8.08 -2.38 -0.02 0.69 16
33 H 0.21 3.15 7.97 -2.91 -0.02 3.12 16
34 H 0.04 1.67 6.56 -2.38 -0.02 1.65 16
35 H 0.01 0.32 7.35 -2.39 -0.02 0.30 16
36 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16
37 H 0.09 2.34 8.03 -2.39 -0.02 2.32 16
38 H 0.08 1.73 6.05 -2.39 -0.01 1.72 16
39 H 0.07 1.57 4.89 -2.38 -0.01 1.56 16
40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16
41 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16
42 H 0.04 1.23 6.28 -2.39 -0.01 1.21 16
43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16
44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
Total: -1.00 -75.80 378.05 0.85 -74.95
By element:
Atomic # 1 Polarization: 10.41 SS G_CDS: 1.00 Total: 11.41 kcal
Atomic # 6 Polarization: 2.84 SS G_CDS: 6.10 Total: 8.95 kcal
Atomic # 7 Polarization: -114.52 SS G_CDS: -3.26 Total: -117.78 kcal
Atomic # 8 Polarization: -91.27 SS G_CDS: -4.69 Total: -95.96 kcal
Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal
Atomic # 16 Polarization: 76.00 SS G_CDS: -0.33 Total: 75.67 kcal
Total: -75.80 0.85 -74.95 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362077710.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.563 kcal
(2) G-P(sol) polarization free energy of solvation -75.800 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.363 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.846 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds