Wall clock time and date at job start Sat Apr 11 2020 06:50:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09008 * 109.58454 * 2 1
4 4 C 1.53194 * 109.70052 * 239.64677 * 2 1 3
5 5 C 1.53042 * 109.31183 * 185.50623 * 4 2 1
6 6 H 1.08996 * 109.45252 * 181.38079 * 5 4 2
7 7 N 1.46500 * 109.45912 * 301.34341 * 5 4 2
8 8 C 1.34779 * 120.00025 * 205.06512 * 7 5 4
9 9 O 1.21282 * 119.99959 * 0.02562 * 8 7 5
10 10 C 1.50701 * 119.99787 * 179.97438 * 8 7 5
11 11 S 1.81005 * 109.46746 * 180.02562 * 10 8 7
12 12 C 1.76203 * 99.99651 * 180.02562 * 11 10 8
13 13 H 1.07998 * 120.00199 * 359.97438 * 12 11 10
14 14 C 1.38807 * 119.99508 * 180.02562 * 12 11 10
15 15 N 1.31631 * 119.99440 * 179.97438 * 14 12 11
16 16 Si 1.86800 * 120.00387 * 0.02562 * 14 12 11
17 17 H 1.48498 * 109.47409 * 89.99691 * 16 14 12
18 18 H 1.48501 * 109.47087 * 210.00082 * 16 14 12
19 19 H 1.48504 * 109.46712 * 329.99766 * 16 14 12
20 20 C 1.53038 * 109.53932 * 61.36318 * 5 4 2
21 21 C 1.53199 * 109.31418 * 298.63649 * 20 5 4
22 22 N 1.46923 * 108.77434 * 54.63190 * 21 20 5
23 23 C 1.34782 * 120.63207 * 126.41495 * 22 21 20
24 24 O 1.21276 * 120.00049 * 174.22507 * 23 22 21
25 25 C 1.50695 * 119.99756 * 354.22695 * 23 22 21
26 26 C 1.50693 * 109.47280 * 179.97438 * 25 23 22
27 27 N 1.34779 * 120.00564 * 179.97438 * 26 25 23
28 28 O 1.21283 * 119.99979 * 0.02562 * 26 25 23
29 29 H 1.09003 * 109.46874 * 305.46677 * 1 2 3
30 30 H 1.08999 * 109.47540 * 65.46635 * 1 2 3
31 31 H 1.09003 * 109.46992 * 185.47151 * 1 2 3
32 32 H 1.09001 * 109.50195 * 65.55462 * 4 2 1
33 33 H 1.08992 * 109.49633 * 305.45231 * 4 2 1
34 34 H 0.97002 * 120.00440 * 25.06703 * 7 5 4
35 35 H 1.09002 * 109.47343 * 60.00446 * 10 8 7
36 36 H 1.08997 * 109.47414 * 299.99927 * 10 8 7
37 37 H 0.97004 * 119.99488 * 180.02562 * 15 14 12
38 38 H 1.08997 * 109.49798 * 58.58756 * 20 5 4
39 39 H 1.08994 * 109.50229 * 178.65547 * 20 5 4
40 40 H 1.08998 * 109.58981 * 174.41882 * 21 20 5
41 41 H 1.08997 * 109.58433 * 294.70467 * 21 20 5
42 42 H 1.09004 * 109.47315 * 300.00273 * 25 23 22
43 43 H 1.09006 * 109.46841 * 59.99862 * 25 23 22
44 44 H 0.97008 * 119.99296 * 0.02562 * 27 26 25
45 45 H 0.96996 * 120.00431 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0270 0.0000
4 6 2.0464 -0.7288 -1.2446
5 6 3.5705 -0.8443 -1.1675
6 1 3.9427 -1.3408 -2.0636
7 7 4.1572 0.4947 -1.0722
8 6 5.4209 0.7080 -1.4894
9 8 6.0722 -0.2085 -1.9442
10 6 6.0242 2.0855 -1.3919
11 16 7.7186 2.0484 -2.0273
12 6 8.1678 3.7369 -1.7995
13 1 7.4583 4.4320 -1.3754
14 6 9.4332 4.1739 -2.1662
15 7 9.7686 5.4354 -1.9965
16 14 10.6597 2.9722 -2.9018
17 1 10.5095 2.9536 -4.3790
18 1 12.0390 3.3950 -2.5497
19 1 10.4055 1.6126 -2.3613
20 6 3.9602 -1.6607 0.0668
21 6 3.4654 -0.9425 1.3263
22 7 2.0226 -0.6980 1.1953
23 6 1.1672 -1.1060 2.1536
24 8 -0.0063 -0.8075 2.0860
25 6 1.6690 -1.9330 3.3091
26 6 0.5220 -2.2546 4.2322
27 7 0.7353 -2.9902 5.3412
28 8 -0.5932 -1.8523 3.9766
29 1 -0.3633 0.5963 0.8370
30 1 -0.3634 0.4267 -0.9348
31 1 -0.3633 -1.0230 0.0980
32 1 1.7688 -0.1672 -2.1366
33 1 1.6080 -1.7256 -1.2905
34 1 3.6362 1.2278 -0.7088
35 1 6.0335 2.4052 -0.3498
36 1 5.4308 2.7846 -1.9812
37 1 10.6528 5.7409 -2.2531
38 1 3.5037 -2.6488 0.0085
39 1 5.0446 -1.7628 0.1081
40 1 3.6524 -1.5665 2.2002
41 1 3.9905 0.0064 1.4358
42 1 2.1029 -2.8591 2.9318
43 1 2.4278 -1.3721 3.8548
44 1 1.6272 -3.3123 5.5454
45 1 -0.0030 -3.1975 5.9351
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001074840583.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:39
Heat of formation + Delta-G solvation = -126.108097 kcal
Electronic energy + Delta-G solvation = -27999.390467 eV
Core-core repulsion = 23949.309044 eV
Total energy + Delta-G solvation = -4050.081424 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.140 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.94112 -40.82144 -39.86872 -38.23739 -35.39647 -34.65532 -34.61290 -34.13030
-32.73633 -30.95071 -30.15078 -28.30766 -27.82251 -25.54257 -23.70125 -22.67991
-22.03610 -21.00140 -19.89824 -19.69386 -18.26730 -18.14158 -17.90977 -17.40834
-17.08814 -16.88099 -16.82576 -16.66668 -16.33141 -15.79986 -15.45928 -15.13418
-14.99106 -14.89936 -14.61887 -14.51200 -14.38620 -14.19609 -13.67464 -13.49825
-13.31459 -13.28295 -13.02792 -12.99951 -12.73094 -12.60934 -12.54816 -12.06636
-11.97265 -11.84912 -11.71447 -11.15411 -10.96585 -10.92937 -10.55077 -10.50745
-10.12127 -9.90929 -9.50281 -8.96267 -8.49721 -6.19884 1.02078 1.33496
1.48601 1.58557 1.62299 1.66208 1.78787 1.86414 2.25081 2.29331
2.73582 2.74620 2.88686 3.42419 3.66791 3.74773 3.87214 3.94546
4.06707 4.12605 4.22045 4.26332 4.31543 4.37703 4.42210 4.50619
4.51676 4.66022 4.77362 4.83094 4.92120 4.96876 5.02988 5.15012
5.22977 5.38973 5.53812 5.70494 5.72360 5.97933 6.13563 6.42092
6.49239 6.57821 6.95521 7.23488 7.29823 7.50082 8.62649
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.020637 B = 0.002191 C = 0.002136
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1356.475141 B =12774.932475 C =13104.241119
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.143 3.857
3 H 0.077 0.923
4 C -0.125 4.125
5 C 0.145 3.855
6 H 0.077 0.923
7 N -0.708 5.708
8 C 0.541 3.459
9 O -0.557 6.557
10 C -0.114 4.114
11 S -0.171 6.171
12 C -0.529 4.529
13 H 0.061 0.939
14 C 0.043 3.957
15 N -0.918 5.918
16 Si 0.916 3.084
17 H -0.264 1.264
18 H -0.261 1.261
19 H -0.233 1.233
20 C -0.142 4.142
21 C 0.107 3.893
22 N -0.607 5.607
23 C 0.505 3.495
24 O -0.536 6.536
25 C -0.163 4.163
26 C 0.509 3.491
27 N -0.839 5.839
28 O -0.567 6.567
29 H 0.055 0.945
30 H 0.057 0.943
31 H 0.047 0.953
32 H 0.089 0.911
33 H 0.090 0.910
34 H 0.410 0.590
35 H 0.113 0.887
36 H 0.108 0.892
37 H 0.276 0.724
38 H 0.093 0.907
39 H 0.072 0.928
40 H 0.120 0.880
41 H 0.071 0.929
42 H 0.158 0.842
43 H 0.155 0.845
44 H 0.419 0.581
45 H 0.405 0.595
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.329 -19.857 12.533 28.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.040 3.960
3 H 0.095 0.905
4 C -0.164 4.164
5 C 0.041 3.959
6 H 0.095 0.905
7 N -0.362 5.362
8 C 0.327 3.673
9 O -0.435 6.435
10 C -0.265 4.265
11 S 0.056 5.944
12 C -0.676 4.676
13 H 0.079 0.921
14 C -0.162 4.162
15 N -0.556 5.556
16 Si 0.738 3.262
17 H -0.189 1.189
18 H -0.185 1.185
19 H -0.157 1.157
20 C -0.181 4.181
21 C -0.015 4.015
22 N -0.342 5.342
23 C 0.293 3.707
24 O -0.412 6.412
25 C -0.205 4.205
26 C 0.293 3.707
27 N -0.405 5.405
28 O -0.444 6.444
29 H 0.074 0.926
30 H 0.075 0.925
31 H 0.066 0.934
32 H 0.108 0.892
33 H 0.108 0.892
34 H 0.247 0.753
35 H 0.131 0.869
36 H 0.126 0.874
37 H 0.086 0.914
38 H 0.112 0.888
39 H 0.090 0.910
40 H 0.138 0.862
41 H 0.089 0.911
42 H 0.176 0.824
43 H 0.173 0.827
44 H 0.251 0.749
45 H 0.236 0.764
Dipole moment (debyes) X Y Z Total
from point charges -16.418 -20.735 11.424 28.810
hybrid contribution -0.118 1.513 0.594 1.629
sum -16.536 -19.222 12.017 28.060
Atomic orbital electron populations
1.22007 0.93347 1.02249 1.00803 1.21228 0.95031 0.95590 0.84176
0.90513 1.22213 0.93016 1.03088 0.98089 1.20982 0.92896 0.82662
0.99361 0.90481 1.45925 1.13047 1.12623 1.64652 1.19817 0.82125
0.88811 0.76579 1.90693 1.61647 1.45310 1.45804 1.23295 0.98475
0.98344 1.06405 1.84654 1.12836 1.12938 1.83994 1.22485 1.03087
0.93911 1.48164 0.92120 1.25603 0.99274 0.96660 0.94681 1.70027
1.22146 1.16186 1.47290 0.85845 0.79145 0.81230 0.80007 1.18887
1.18548 1.15686 1.22259 1.01967 0.99782 0.94085 1.21904 0.78548
1.01652 0.99426 1.48216 1.07693 1.58212 1.20076 1.20584 0.85815
0.80483 0.83826 1.90911 1.18418 1.55847 1.76029 1.21763 0.98825
1.04556 0.95365 1.20530 0.89756 0.77891 0.82550 1.43717 1.15843
1.55619 1.25287 1.90898 1.26740 1.52842 1.73942 0.92642 0.92477
0.93398 0.89203 0.89181 0.75268 0.86877 0.87362 0.91444 0.88823
0.90966 0.86247 0.91108 0.82448 0.82744 0.74915 0.76350
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.49 7.62 71.98 0.55 -1.94 16
2 C 0.14 2.14 3.19 44.97 0.14 2.29 16
3 H 0.08 1.07 6.64 -2.38 -0.02 1.05 16
4 C -0.13 -1.64 5.08 30.67 0.16 -1.48 16
5 C 0.15 2.37 2.78 45.02 0.13 2.49 16
6 H 0.08 1.59 7.57 -2.39 -0.02 1.57 16
7 N -0.71 -13.76 4.27 -442.40 -1.89 -15.65 16
8 C 0.54 16.22 7.81 87.66 0.68 16.90 16
9 O -0.56 -21.06 15.52 -3.04 -0.05 -21.11 16
10 C -0.11 -3.96 6.16 71.24 0.44 -3.52 16
11 S -0.17 -8.21 18.55 -56.49 -1.05 -9.26 16
12 C -0.53 -29.99 10.04 67.96 0.68 -29.31 16
13 H 0.06 3.65 8.03 -2.91 -0.02 3.62 16
14 C 0.04 2.48 5.50 84.86 0.47 2.95 16
15 N -0.92 -55.22 13.97 21.65 0.30 -54.92 16
16 Si 0.92 43.93 27.74 68.60 1.90 45.83 16
17 H -0.26 -12.42 7.11 99.48 0.71 -11.72 16
18 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16
19 H -0.23 -11.01 6.74 99.48 0.67 -10.34 16
20 C -0.14 -1.78 5.77 30.67 0.18 -1.60 16
21 C 0.11 1.01 6.09 86.37 0.53 1.53 16
22 N -0.61 -8.21 2.97 -795.02 -2.36 -10.57 16
23 C 0.51 8.85 7.50 87.65 0.66 9.51 16
24 O -0.54 -15.00 9.74 20.42 0.20 -14.80 16
25 C -0.16 -1.30 4.54 29.10 0.13 -1.17 16
26 C 0.51 7.63 8.09 87.65 0.71 8.34 16
27 N -0.84 -4.59 8.87 -173.53 -1.54 -6.13 16
28 O -0.57 -16.27 15.02 20.40 0.31 -15.97 16
29 H 0.05 1.39 6.54 -2.39 -0.02 1.38 16
30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
31 H 0.05 1.10 6.95 -2.39 -0.02 1.09 16
32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
33 H 0.09 1.11 8.14 -2.39 -0.02 1.10 16
34 H 0.41 6.22 6.87 -92.71 -0.64 5.58 16
35 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16
36 H 0.11 3.52 8.14 -2.40 -0.02 3.50 16
37 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16
38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16
39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
40 H 0.12 0.32 5.93 -2.39 -0.01 0.30 16
41 H 0.07 0.79 7.74 -2.39 -0.02 0.77 16
42 H 0.16 0.11 7.93 -2.38 -0.02 0.09 16
43 H 0.16 0.20 7.71 -2.38 -0.02 0.18 16
44 H 0.42 -1.03 8.83 -92.70 -0.82 -1.85 16
45 H 0.41 2.23 8.93 -92.71 -0.83 1.40 16
Total: -1.00 -88.75 372.74 0.01 -88.74
By element:
Atomic # 1 Polarization: 10.11 SS G_CDS: -1.27 Total: 8.84 kcal
Atomic # 6 Polarization: -0.46 SS G_CDS: 5.45 Total: 4.99 kcal
Atomic # 7 Polarization: -81.78 SS G_CDS: -5.49 Total: -87.27 kcal
Atomic # 8 Polarization: -52.34 SS G_CDS: 0.46 Total: -51.88 kcal
Atomic # 14 Polarization: 43.93 SS G_CDS: 1.90 Total: 45.83 kcal
Atomic # 16 Polarization: -8.21 SS G_CDS: -1.05 Total: -9.26 kcal
Total: -88.75 0.01 -88.74 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001074840583.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.365 kcal
(2) G-P(sol) polarization free energy of solvation -88.750 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.115 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.743 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.108 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds