Wall clock time and date at job start Sat Apr 11 2020 06:50:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35675 * 117.00547 * 2 1
4 4 C 1.38923 * 119.68704 * 180.02562 * 3 2 1
5 5 C 1.38376 * 119.10809 * 180.02562 * 4 3 2
6 6 C 1.38829 * 118.49139 * 359.97438 * 5 4 3
7 7 C 1.50697 * 120.35793 * 179.97438 * 6 5 4
8 8 N 1.46499 * 109.47394 * 90.00268 * 7 6 5
9 9 C 1.46505 * 119.99567 * 275.00172 * 8 7 6
10 10 S 1.65598 * 120.00071 * 94.99839 * 8 7 6
11 11 O 1.42100 * 106.40183 * 336.46031 * 10 8 7
12 12 O 1.42101 * 106.40217 * 203.54279 * 10 8 7
13 13 N 1.65597 * 107.21541 * 90.00311 * 10 8 7
14 14 C 1.46503 * 119.99956 * 269.99520 * 13 10 8
15 15 C 1.46497 * 120.00227 * 89.99985 * 13 10 8
16 16 H 1.09003 * 109.46733 * 0.02562 * 15 13 10
17 17 C 1.53000 * 109.47145 * 119.99787 * 15 13 10
18 18 C 1.50694 * 109.47115 * 239.99861 * 15 13 10
19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13
20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13
21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15
22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15
23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18
24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18
25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18
26 26 C 1.38048 * 119.28362 * 0.25922 * 6 5 4
27 27 N 1.31965 * 120.83584 * 359.44992 * 26 6 5
28 28 H 1.09002 * 109.46456 * 300.00000 * 1 2 3
29 29 H 1.09000 * 109.46942 * 59.99334 * 1 2 3
30 30 H 1.08995 * 109.47230 * 179.97438 * 1 2 3
31 31 H 1.07993 * 120.44457 * 0.02562 * 4 3 2
32 32 H 1.08007 * 120.75402 * 180.02562 * 5 4 3
33 33 H 1.09000 * 109.47067 * 329.99879 * 7 6 5
34 34 H 1.08998 * 109.47062 * 210.00257 * 7 6 5
35 35 H 1.08998 * 109.46822 * 269.99397 * 9 8 7
36 36 H 1.08993 * 109.47446 * 29.99964 * 9 8 7
37 37 H 1.09002 * 109.46576 * 150.00273 * 9 8 7
38 38 H 1.08994 * 109.47665 * 270.00896 * 14 13 10
39 39 H 1.09008 * 109.46786 * 30.00504 * 14 13 10
40 40 H 1.08997 * 109.47360 * 149.99945 * 14 13 10
41 41 H 1.08997 * 109.47359 * 180.02562 * 17 15 13
42 42 H 1.09007 * 109.47356 * 300.00099 * 17 15 13
43 43 H 1.09000 * 109.47156 * 59.99824 * 17 15 13
44 44 H 0.97001 * 119.99646 * 179.97438 * 21 20 18
45 45 H 1.08001 * 119.57965 * 179.72065 * 26 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0450 1.2088 0.0000
4 6 3.4328 1.2738 -0.0005
5 6 4.0486 2.5130 0.0000
6 6 3.2507 3.6491 0.0005
7 6 3.8770 5.0197 0.0017
8 7 4.0805 5.4649 -1.3791
9 6 5.2885 5.0673 -2.1064
10 16 2.9450 6.4175 -2.1177
11 8 1.7191 6.1795 -1.4396
12 8 3.1093 6.2265 -3.5162
13 7 3.3517 7.9929 -1.8099
14 6 2.8258 8.6661 -0.6197
15 6 4.2372 8.7136 -2.7278
16 1 4.5237 8.0554 -3.5480
17 6 3.5064 9.9360 -3.2869
18 6 5.4712 9.1612 -1.9876
19 1 5.5844 8.9321 -0.9383
20 6 6.4554 9.8641 -2.6498
21 7 6.3173 10.1435 -3.9275
22 14 7.9846 10.4194 -1.7321
23 1 7.7543 11.7692 -1.1573
24 1 8.2815 9.4597 -0.6385
25 1 9.1340 10.4709 -2.6711
26 6 1.8773 3.5096 0.0059
27 7 1.3188 2.3140 -0.0003
28 1 -0.3632 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3633 -1.0276 -0.0005
31 1 4.0229 0.3694 -0.0014
32 1 5.1256 2.5945 -0.0008
33 1 4.8373 4.9799 0.5159
34 1 3.2184 5.7197 0.5159
35 1 6.0705 5.8091 -1.9448
36 1 5.6277 4.0968 -1.7444
37 1 5.0658 5.0003 -3.1713
38 1 1.8795 9.1488 -0.8635
39 1 2.6666 7.9333 0.1716
40 1 3.5400 9.4166 -0.2813
41 1 4.1651 10.4721 -3.9702
42 1 2.6138 9.6124 -3.8224
43 1 3.2195 10.5944 -2.4669
44 1 7.0095 10.6384 -4.3932
45 1 1.2520 4.3902 0.0110
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000619750837.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:50:43
Heat of formation + Delta-G solvation = -66.534211 kcal
Electronic energy + Delta-G solvation = -29189.924094 eV
Core-core repulsion = 25142.425987 eV
Total energy + Delta-G solvation = -4047.498106 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.140 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-40.72014 -38.28537 -36.77389 -36.16583 -36.00355 -35.26941 -32.63399 -32.55253
-31.28534 -29.11863 -27.97486 -26.68524 -25.54583 -25.21287 -24.65819 -23.37641
-21.97191 -20.74599 -18.49732 -18.44293 -17.46487 -16.98660 -16.78906 -16.49278
-16.12801 -15.87148 -15.46943 -14.89056 -14.61576 -14.39013 -14.26521 -13.65013
-13.50331 -13.32070 -13.24547 -13.11034 -12.76607 -12.60888 -12.20870 -12.06167
-12.00324 -11.85135 -11.77273 -11.43400 -11.38569 -11.26087 -11.23444 -11.11403
-10.97926 -10.88371 -10.46510 -10.25190 -10.10608 -9.97707 -9.72206 -9.33733
-8.83121 -8.52261 -8.51023 -7.97845 -6.13054 -4.21875 0.96517 1.13834
1.30267 2.96195 3.21137 3.28866 3.29694 3.39262 3.73095 4.07632
4.29817 4.32037 4.68974 4.74701 4.85048 4.94573 5.04380 5.14780
5.15791 5.17353 5.17744 5.44101 5.46907 5.53319 5.66030 5.73389
5.82569 5.94395 6.08359 6.14456 6.20950 6.25808 6.34820 6.37077
6.60910 6.74813 6.84970 6.89986 7.09323 7.10441 7.46390 7.58843
7.74677 7.79093 8.01638 8.22432 8.81369 9.44571 10.91883
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.020633 B = 0.003176 C = 0.002967
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1356.746926 B = 8815.012607 C = 9435.278241
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 O -0.312 6.312
3 C 0.315 3.685
4 C -0.196 4.196
5 C -0.026 4.026
6 C -0.197 4.197
7 C 0.178 3.822
8 N -1.006 6.006
9 C 0.088 3.912
10 S 2.779 3.221
11 O -0.995 6.995
12 O -0.979 6.979
13 N -0.990 5.990
14 C 0.107 3.893
15 C 0.268 3.732
16 H 0.058 0.942
17 C -0.145 4.145
18 C -0.526 4.526
19 H 0.063 0.937
20 C 0.064 3.936
21 N -0.886 5.886
22 Si 0.896 3.104
23 H -0.281 1.281
24 H -0.274 1.274
25 H -0.286 1.286
26 C 0.159 3.841
27 N -0.541 5.541
28 H 0.058 0.942
29 H 0.059 0.941
30 H 0.094 0.906
31 H 0.140 0.860
32 H 0.142 0.858
33 H 0.088 0.912
34 H 0.089 0.911
35 H 0.067 0.933
36 H 0.062 0.938
37 H 0.078 0.922
38 H 0.043 0.957
39 H 0.048 0.952
40 H 0.079 0.921
41 H 0.092 0.908
42 H 0.012 0.988
43 H 0.032 0.968
44 H 0.264 0.736
45 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.844 -13.906 9.378 17.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.219 6.219
3 C 0.136 3.864
4 C -0.217 4.217
5 C -0.052 4.052
6 C -0.201 4.201
7 C 0.051 3.949
8 N -0.843 5.843
9 C -0.057 4.057
10 S 2.789 3.211
11 O -0.979 6.979
12 O -0.963 6.963
13 N -0.832 5.832
14 C -0.039 4.039
15 C 0.165 3.835
16 H 0.075 0.925
17 C -0.205 4.205
18 C -0.565 4.565
19 H 0.081 0.919
20 C -0.138 4.138
21 N -0.524 5.524
22 Si 0.724 3.276
23 H -0.207 1.207
24 H -0.199 1.199
25 H -0.212 1.212
26 C 0.003 3.997
27 N -0.264 5.264
28 H 0.077 0.923
29 H 0.078 0.922
30 H 0.112 0.888
31 H 0.158 0.842
32 H 0.159 0.841
33 H 0.106 0.894
34 H 0.107 0.893
35 H 0.085 0.915
36 H 0.081 0.919
37 H 0.097 0.903
38 H 0.061 0.939
39 H 0.067 0.933
40 H 0.098 0.902
41 H 0.111 0.889
42 H 0.031 0.969
43 H 0.051 0.949
44 H 0.074 0.926
45 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges -6.279 -14.478 8.692 18.017
hybrid contribution 1.894 0.660 0.643 2.106
sum -4.385 -13.818 9.335 17.243
Atomic orbital electron populations
1.22846 0.77306 1.02711 1.02653 1.86211 1.22909 1.24794 1.87949
1.19936 0.89500 0.84832 0.92138 1.21016 0.91963 0.99445 1.09273
1.21336 1.00438 0.90678 0.92719 1.21238 0.95168 0.97281 1.06434
1.19887 1.01065 0.90840 0.83087 1.58024 1.37195 1.66438 1.22633
1.21531 0.86803 1.00412 0.96974 1.01976 0.73028 0.72844 0.73235
1.93492 1.42392 1.85630 1.76350 1.93567 1.86497 1.85667 1.30522
1.57785 1.62846 1.28244 1.34375 1.21190 0.98632 0.98048 0.86076
1.18724 0.86532 0.90724 0.87541 0.92462 1.22060 0.98264 0.99741
1.00416 1.21364 1.02377 1.36001 0.96757 0.91893 1.24933 0.98337
0.95709 0.94868 1.69884 1.34283 1.39702 1.08545 0.86538 0.82486
0.79054 0.79507 1.20689 1.19926 1.21205 1.22807 0.92749 0.93919
0.90247 1.67414 1.40804 0.98778 1.19370 0.92279 0.92215 0.88794
0.84246 0.84060 0.89352 0.89282 0.91475 0.91874 0.90315 0.93853
0.93314 0.90209 0.88904 0.96933 0.94857 0.92612 0.80757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.38 10.38 101.05 1.05 1.43 16
2 O -0.31 -3.79 10.48 -18.73 -0.20 -3.98 16
3 C 0.31 4.19 7.49 -17.12 -0.13 4.06 16
4 C -0.20 -2.22 10.04 -39.28 -0.39 -2.62 16
5 C -0.03 -0.28 9.58 -39.31 -0.38 -0.65 16
6 C -0.20 -2.49 5.48 -104.47 -0.57 -3.06 16
7 C 0.18 2.20 5.47 -5.20 -0.03 2.17 16
8 N -1.01 -15.57 3.23 -123.05 -0.40 -15.97 16
9 C 0.09 1.28 10.68 59.85 0.64 1.92 16
10 S 2.78 53.24 6.01 -107.50 -0.65 52.60 16
11 O -0.99 -18.83 14.37 -57.17 -0.82 -19.65 16
12 O -0.98 -22.22 15.30 -57.17 -0.88 -23.09 16
13 N -0.99 -19.87 3.12 -115.85 -0.36 -20.23 16
14 C 0.11 1.81 9.28 59.85 0.56 2.37 16
15 C 0.27 6.36 2.62 -69.09 -0.18 6.18 16
16 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16
17 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16
18 C -0.53 -12.96 7.99 -34.44 -0.28 -13.24 16
19 H 0.06 1.50 7.33 -52.49 -0.38 1.12 16
20 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16
21 N -0.89 -23.77 11.32 55.43 0.63 -23.14 16
22 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16
23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16
24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16
25 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16
26 C 0.16 2.27 10.45 -17.56 -0.18 2.08 16
27 N -0.54 -7.84 9.22 -13.33 -0.12 -7.97 16
28 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16
29 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16
30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16
32 H 0.14 1.14 7.90 -52.48 -0.41 0.72 16
33 H 0.09 0.88 8.06 -51.93 -0.42 0.46 16
34 H 0.09 1.04 7.21 -51.93 -0.37 0.67 16
35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
36 H 0.06 0.70 7.64 -51.93 -0.40 0.30 16
37 H 0.08 1.26 7.02 -51.93 -0.36 0.89 16
38 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16
39 H 0.05 0.69 7.44 -51.92 -0.39 0.30 16
40 H 0.08 1.38 7.02 -51.93 -0.36 1.01 16
41 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16
42 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16
43 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16
44 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16
45 H 0.18 2.55 6.64 -52.49 -0.35 2.20 16
LS Contribution 379.69 15.07 5.72 5.72
Total: -1.00 -31.11 379.69 -8.36 -39.47
By element:
Atomic # 1 Polarization: 9.03 SS G_CDS: -6.62 Total: 2.42 kcal
Atomic # 6 Polarization: -1.24 SS G_CDS: 0.34 Total: -0.90 kcal
Atomic # 7 Polarization: -67.05 SS G_CDS: -0.25 Total: -67.30 kcal
Atomic # 8 Polarization: -44.84 SS G_CDS: -1.89 Total: -46.73 kcal
Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal
Atomic # 16 Polarization: 53.24 SS G_CDS: -0.65 Total: 52.60 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -31.11 -8.36 -39.47 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000619750837.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.061 kcal
(2) G-P(sol) polarization free energy of solvation -31.109 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.170 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.534 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds