Wall clock time and date at job start Sat Apr 11 2020 06:53:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81409 * 1
3 3 C 1.81400 * 102.99816 * 2 1
4 4 C 1.50702 * 109.47039 * 180.02562 * 3 2 1
5 5 O 1.21283 * 119.99867 * 359.97438 * 4 3 2
6 6 N 1.34778 * 119.99748 * 179.97438 * 4 3 2
7 7 C 1.47045 * 120.12788 * 359.97438 * 6 4 3
8 8 C 1.53540 * 107.42744 * 130.19786 * 7 6 4
9 9 O 1.42816 * 108.31007 * 55.52800 * 8 7 6
10 10 C 1.42779 * 115.71366 * 295.60123 * 9 8 7
11 11 H 1.08995 * 112.20563 * 290.84433 * 10 9 8
12 12 C 1.55389 * 107.10398 * 166.20290 * 10 9 8
13 13 N 1.47899 * 104.75173 * 281.72427 * 12 10 9
14 14 C 1.46902 * 111.00107 * 213.42226 * 13 12 10
15 15 C 1.50699 * 109.47220 * 69.86757 * 14 13 12
16 16 O 1.21297 * 120.00185 * 0.02562 * 15 14 13
17 17 N 1.34778 * 119.99900 * 180.02562 * 15 14 13
18 18 C 1.37097 * 119.99894 * 180.02562 * 17 15 14
19 19 H 1.08001 * 120.00267 * 0.02562 * 18 17 15
20 20 C 1.38951 * 120.00113 * 179.97438 * 18 17 15
21 21 N 1.31418 * 120.00146 * 179.97438 * 20 18 17
22 22 Si 1.86794 * 119.99968 * 359.97438 * 20 18 17
23 23 H 1.48500 * 109.47133 * 89.99984 * 22 20 18
24 24 H 1.48496 * 109.47237 * 209.99753 * 22 20 18
25 25 H 1.48499 * 109.47113 * 330.00270 * 22 20 18
26 26 C 1.47630 * 108.48646 * 335.63454 * 13 12 10
27 27 C 1.45680 * 120.12239 * 180.02562 * 6 4 3
28 28 H 1.08995 * 109.95318 * 345.51643 * 27 6 4
29 29 H 1.08993 * 109.46795 * 60.00355 * 1 2 3
30 30 H 1.09006 * 109.46741 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.46906 * 299.99881 * 1 2 3
32 32 H 1.08997 * 109.47305 * 60.00071 * 3 2 1
33 33 H 1.09002 * 109.46750 * 299.99928 * 3 2 1
34 34 H 1.09002 * 109.87846 * 249.69908 * 7 6 4
35 35 H 1.09006 * 109.87625 * 10.69674 * 7 6 4
36 36 H 1.09000 * 109.68395 * 175.32710 * 8 7 6
37 37 H 1.09004 * 109.67786 * 295.87895 * 8 7 6
38 38 H 1.09000 * 110.38317 * 40.54070 * 12 10 9
39 39 H 1.09004 * 110.38289 * 162.90160 * 12 10 9
40 40 H 1.08995 * 109.47076 * 189.87217 * 14 13 12
41 41 H 1.09001 * 109.47099 * 309.87128 * 14 13 12
42 42 H 0.96993 * 120.00323 * 359.97438 * 17 15 14
43 43 H 0.96992 * 119.99808 * 180.02562 * 21 20 18
44 44 H 1.09005 * 109.97068 * 241.83412 * 26 13 12
45 45 H 1.08999 * 109.97049 * 120.57566 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8141 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 6 3.7195 1.9374 -0.0006
5 8 4.4404 0.9621 -0.0006
6 7 4.2575 3.1732 -0.0013
7 6 3.3860 4.3575 -0.0019
8 6 3.8750 5.2889 1.1166
9 8 5.2590 5.5649 0.8975
10 6 6.1368 4.4428 0.9909
11 1 6.2231 4.0711 2.0119
12 6 7.4997 4.8769 0.3837
13 7 7.2983 4.8101 -1.0800
14 6 8.5356 4.4110 -1.7640
15 6 8.8341 2.9656 -1.4597
16 8 8.0891 2.3301 -0.7438
17 7 9.9288 2.3789 -1.9830
18 6 10.2001 1.0638 -1.7065
19 1 9.5364 0.4978 -1.0698
20 6 11.3284 0.4588 -2.2465
21 7 11.5888 -0.8017 -1.9811
22 14 12.4753 1.4371 -3.3495
23 1 13.5240 2.0859 -2.5220
24 1 13.1141 0.5254 -4.3323
25 1 11.6998 2.4779 -4.0710
26 6 6.2077 3.8550 -1.3593
27 6 5.7046 3.3405 -0.0024
28 1 6.1883 2.3979 0.2536
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8032 2.2371 0.8899
33 1 1.8031 2.2371 -0.8900
34 1 3.4528 4.8663 -0.9636
35 1 2.3550 4.0591 0.1885
36 1 3.3057 6.2181 1.0957
37 1 3.7468 4.8009 2.0828
38 1 7.7434 5.8950 0.6872
39 1 8.2881 4.1895 0.6903
40 1 8.4133 4.5382 -2.8396
41 1 9.3600 5.0333 -1.4160
42 1 10.5244 2.8869 -2.5557
43 1 12.3766 -1.2239 -2.3577
44 1 6.5843 3.0240 -1.9559
45 1 5.3991 4.3580 -1.8896
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001217219865.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:30
Heat of formation + Delta-G solvation = -68.235121 kcal
Electronic energy + Delta-G solvation = -29264.049170 eV
Core-core repulsion = 25216.477307 eV
Total energy + Delta-G solvation = -4047.571863 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.140 amu
Computer time = 1.65 seconds
Orbital eigenvalues (eV)
-40.93133 -39.22931 -38.24448 -36.23454 -34.94023 -33.89568 -31.97187 -31.52847
-30.44970 -29.08007 -28.57086 -27.97927 -26.23035 -24.07529 -23.60837 -21.41026
-21.06716 -19.47234 -18.84556 -18.28096 -17.55761 -17.12814 -16.49374 -16.11450
-15.91957 -15.79121 -15.37445 -15.02507 -14.89581 -14.62560 -14.20197 -14.03255
-13.94712 -13.66824 -13.51674 -13.31052 -12.94933 -12.85593 -12.53622 -12.48683
-12.41806 -12.12442 -11.94586 -11.61641 -11.38640 -11.32505 -11.19490 -10.98493
-10.61175 -10.36547 -10.14834 -10.11761 -9.99290 -9.81493 -9.54642 -9.08311
-8.54742 -8.19954 -7.83386 -7.74667 -6.32974 -3.84375 1.25158 2.32879
2.53464 2.83176 3.01623 3.05696 3.14465 3.61272 3.66066 4.08427
4.20426 4.27424 4.53472 4.61370 4.65470 4.71407 4.79192 4.83909
4.86170 4.88995 4.94359 5.04827 5.14480 5.22292 5.41227 5.42147
5.48752 5.68400 5.70666 5.76478 5.83581 5.89580 6.00302 6.08061
6.25144 6.37206 6.56408 7.10828 7.12910 7.25525 7.29674 7.53835
8.10653 8.13493 8.54953 8.92655 9.39681 9.76792 10.79762
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.011826 B = 0.003381 C = 0.002739
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2367.138168 B = 8278.943375 C =10219.268970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 S -0.179 6.179
3 C -0.125 4.125
4 C 0.524 3.476
5 O -0.497 6.497
6 N -0.603 5.603
7 C 0.069 3.931
8 C 0.051 3.949
9 O -0.366 6.366
10 C 0.077 3.923
11 H 0.082 0.918
12 C 0.054 3.946
13 N -0.496 5.496
14 C 0.029 3.971
15 C 0.411 3.589
16 O -0.573 6.573
17 N -0.581 5.581
18 C -0.306 4.306
19 H 0.120 0.880
20 C 0.042 3.958
21 N -0.877 5.877
22 Si 0.880 3.120
23 H -0.270 1.270
24 H -0.276 1.276
25 H -0.269 1.269
26 C 0.053 3.947
27 C 0.106 3.894
28 H 0.138 0.862
29 H 0.075 0.925
30 H 0.104 0.896
31 H 0.075 0.925
32 H 0.107 0.893
33 H 0.108 0.892
34 H 0.082 0.918
35 H 0.089 0.911
36 H 0.104 0.896
37 H 0.052 0.948
38 H 0.087 0.913
39 H 0.075 0.925
40 H 0.092 0.908
41 H 0.091 0.909
42 H 0.371 0.629
43 H 0.274 0.726
44 H 0.079 0.921
45 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.709 13.803 3.622 24.333
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.312 4.312
2 S 0.045 5.955
3 C -0.277 4.277
4 C 0.310 3.690
5 O -0.370 6.370
6 N -0.338 5.338
7 C -0.054 4.054
8 C -0.027 4.027
9 O -0.285 6.285
10 C 0.018 3.982
11 H 0.099 0.901
12 C -0.074 4.074
13 N -0.219 5.219
14 C -0.104 4.104
15 C 0.197 3.803
16 O -0.457 6.457
17 N -0.219 5.219
18 C -0.435 4.435
19 H 0.138 0.862
20 C -0.161 4.161
21 N -0.516 5.516
22 Si 0.706 3.294
23 H -0.196 1.196
24 H -0.202 1.202
25 H -0.194 1.194
26 C -0.076 4.076
27 C 0.002 3.998
28 H 0.155 0.845
29 H 0.094 0.906
30 H 0.123 0.877
31 H 0.094 0.906
32 H 0.126 0.874
33 H 0.127 0.873
34 H 0.100 0.900
35 H 0.107 0.893
36 H 0.122 0.878
37 H 0.070 0.930
38 H 0.105 0.895
39 H 0.094 0.906
40 H 0.110 0.890
41 H 0.109 0.891
42 H 0.204 0.796
43 H 0.084 0.916
44 H 0.097 0.903
45 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -19.055 12.447 3.828 23.080
hybrid contribution 0.205 0.676 -0.674 0.977
sum -18.850 13.123 3.154 23.184
Atomic orbital electron populations
1.23540 0.96300 1.06742 1.04656 1.87815 1.03968 1.05747 1.97950
1.23562 0.98005 0.99487 1.06600 1.19693 0.88773 0.83295 0.77289
1.90860 1.61571 1.37637 1.46902 1.47659 1.06947 1.05077 1.74121
1.22538 0.94312 0.87412 1.01164 1.22893 0.83881 0.99489 0.96458
1.87868 1.15704 1.32762 1.92138 1.23607 0.90459 0.86341 0.97809
0.90055 1.23123 0.94724 1.01841 0.87743 1.64080 1.04679 1.45271
1.07839 1.22337 0.93569 0.93730 1.00746 1.20842 0.83719 0.89860
0.85883 1.90536 1.48728 1.65500 1.40984 1.42355 1.22835 1.12250
1.44481 1.19475 1.09386 0.85110 1.29555 0.86207 1.25083 0.97417
0.95772 0.97848 1.69633 1.27432 1.10632 1.43934 0.86671 0.81564
0.80136 0.81038 1.19590 1.20151 1.19404 1.22790 0.93515 0.94586
0.96726 1.22626 0.78639 1.02363 0.96169 0.84476 0.90577 0.87748
0.90641 0.87449 0.87337 0.89998 0.89308 0.87772 0.92951 0.89472
0.90637 0.88956 0.89055 0.79627 0.91554 0.90282 0.91969
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.02 10.76 101.05 1.09 0.06 16
2 S -0.18 -2.23 21.52 -107.50 -2.31 -4.54 16
3 C -0.13 -1.30 4.77 36.01 0.17 -1.12 16
4 C 0.52 8.00 7.70 -10.98 -0.08 7.91 16
5 O -0.50 -10.40 15.27 5.55 0.08 -10.31 16
6 N -0.60 -8.29 2.72 -164.67 -0.45 -8.74 16
7 C 0.07 0.63 6.26 -3.46 -0.02 0.61 16
8 C 0.05 0.46 7.03 37.44 0.26 0.72 16
9 O -0.37 -4.74 10.10 -35.23 -0.36 -5.10 16
10 C 0.08 1.13 4.12 -24.65 -0.10 1.02 16
11 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16
12 C 0.05 0.82 5.75 -2.01 -0.01 0.81 16
13 N -0.50 -8.01 5.42 -232.64 -1.26 -9.28 16
14 C 0.03 0.47 5.85 -4.98 -0.03 0.44 16
15 C 0.41 8.96 6.43 -10.99 -0.07 8.89 16
16 O -0.57 -14.26 10.34 5.54 0.06 -14.21 16
17 N -0.58 -13.64 5.09 -10.96 -0.06 -13.70 16
18 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16
19 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16
20 C 0.04 1.17 5.50 -17.46 -0.10 1.07 16
21 N -0.88 -25.89 13.96 55.50 0.77 -25.12 16
22 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16
23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
25 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16
26 C 0.05 0.90 5.60 -3.12 -0.02 0.89 16
27 C 0.11 1.79 2.58 -67.26 -0.17 1.62 16
28 H 0.14 2.99 5.42 -51.93 -0.28 2.70 16
29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16
30 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16
31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
32 H 0.11 0.80 7.60 -51.93 -0.39 0.40 16
33 H 0.11 0.86 7.99 -51.92 -0.42 0.44 16
34 H 0.08 0.74 7.56 -51.93 -0.39 0.35 16
35 H 0.09 0.51 5.96 -51.93 -0.31 0.20 16
36 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16
37 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16
39 H 0.08 1.31 6.58 -51.93 -0.34 0.97 16
40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16
41 H 0.09 1.30 8.08 -51.93 -0.42 0.88 16
42 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16
43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16
44 H 0.08 1.64 5.82 -51.93 -0.30 1.34 16
45 H 0.06 0.99 7.25 -51.93 -0.38 0.61 16
LS Contribution 364.22 15.07 5.49 5.49
Total: -1.00 -35.51 364.22 -8.38 -43.89
By element:
Atomic # 1 Polarization: 19.18 SS G_CDS: -6.41 Total: 12.77 kcal
Atomic # 6 Polarization: 13.34 SS G_CDS: 0.76 Total: 14.11 kcal
Atomic # 7 Polarization: -55.84 SS G_CDS: -0.99 Total: -56.83 kcal
Atomic # 8 Polarization: -29.40 SS G_CDS: -0.21 Total: -29.61 kcal
Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal
Atomic # 16 Polarization: -2.23 SS G_CDS: -2.31 Total: -4.54 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -35.51 -8.38 -43.89 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001217219865.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.343 kcal
(2) G-P(sol) polarization free energy of solvation -35.507 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.851 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.65 seconds