Wall clock time and date at job start Sat Apr 11 2020 06:53:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81409 * 1
3 3 C 1.81400 * 102.99816 * 2 1
4 4 C 1.50702 * 109.47039 * 180.02562 * 3 2 1
5 5 O 1.21283 * 119.99867 * 359.97438 * 4 3 2
6 6 N 1.34778 * 119.99748 * 179.97438 * 4 3 2
7 7 C 1.47045 * 120.12788 * 359.97438 * 6 4 3
8 8 C 1.53540 * 107.42744 * 130.19786 * 7 6 4
9 9 O 1.42816 * 108.31007 * 55.52800 * 8 7 6
10 10 C 1.42779 * 115.71366 * 295.60123 * 9 8 7
11 11 H 1.08995 * 112.20563 * 290.84433 * 10 9 8
12 12 C 1.55389 * 107.10398 * 166.20290 * 10 9 8
13 13 N 1.47899 * 104.75173 * 281.72427 * 12 10 9
14 14 C 1.46902 * 111.00107 * 213.42226 * 13 12 10
15 15 C 1.50699 * 109.47220 * 69.86757 * 14 13 12
16 16 O 1.21297 * 120.00185 * 0.02562 * 15 14 13
17 17 N 1.34778 * 119.99900 * 180.02562 * 15 14 13
18 18 C 1.37097 * 119.99894 * 180.02562 * 17 15 14
19 19 H 1.08001 * 120.00267 * 0.02562 * 18 17 15
20 20 C 1.38951 * 120.00113 * 179.97438 * 18 17 15
21 21 N 1.31418 * 120.00146 * 179.97438 * 20 18 17
22 22 Si 1.86794 * 119.99968 * 359.97438 * 20 18 17
23 23 H 1.48500 * 109.47133 * 89.99984 * 22 20 18
24 24 H 1.48496 * 109.47237 * 209.99753 * 22 20 18
25 25 H 1.48499 * 109.47113 * 330.00270 * 22 20 18
26 26 C 1.47630 * 108.48646 * 335.63454 * 13 12 10
27 27 C 1.45680 * 120.12239 * 180.02562 * 6 4 3
28 28 H 1.08995 * 109.95318 * 345.51643 * 27 6 4
29 29 H 1.08993 * 109.46795 * 60.00355 * 1 2 3
30 30 H 1.09006 * 109.46741 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.46906 * 299.99881 * 1 2 3
32 32 H 1.08997 * 109.47305 * 60.00071 * 3 2 1
33 33 H 1.09002 * 109.46750 * 299.99928 * 3 2 1
34 34 H 1.09002 * 109.87846 * 249.69908 * 7 6 4
35 35 H 1.09006 * 109.87625 * 10.69674 * 7 6 4
36 36 H 1.09000 * 109.68395 * 175.32710 * 8 7 6
37 37 H 1.09004 * 109.67786 * 295.87895 * 8 7 6
38 38 H 1.09000 * 110.38317 * 40.54070 * 12 10 9
39 39 H 1.09004 * 110.38289 * 162.90160 * 12 10 9
40 40 H 1.08995 * 109.47076 * 189.87217 * 14 13 12
41 41 H 1.09001 * 109.47099 * 309.87128 * 14 13 12
42 42 H 0.96993 * 120.00323 * 359.97438 * 17 15 14
43 43 H 0.96992 * 119.99808 * 180.02562 * 21 20 18
44 44 H 1.09005 * 109.97068 * 241.83412 * 26 13 12
45 45 H 1.08999 * 109.97049 * 120.57566 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8141 0.0000 0.0000
3 6 2.2221 1.7675 0.0000
4 6 3.7195 1.9374 -0.0006
5 8 4.4404 0.9621 -0.0006
6 7 4.2575 3.1732 -0.0013
7 6 3.3860 4.3575 -0.0019
8 6 3.8750 5.2889 1.1166
9 8 5.2590 5.5649 0.8975
10 6 6.1368 4.4428 0.9909
11 1 6.2231 4.0711 2.0119
12 6 7.4997 4.8769 0.3837
13 7 7.2983 4.8101 -1.0800
14 6 8.5356 4.4110 -1.7640
15 6 8.8341 2.9656 -1.4597
16 8 8.0891 2.3301 -0.7438
17 7 9.9288 2.3789 -1.9830
18 6 10.2001 1.0638 -1.7065
19 1 9.5364 0.4978 -1.0698
20 6 11.3284 0.4588 -2.2465
21 7 11.5888 -0.8017 -1.9811
22 14 12.4753 1.4371 -3.3495
23 1 13.5240 2.0859 -2.5220
24 1 13.1141 0.5254 -4.3323
25 1 11.6998 2.4779 -4.0710
26 6 6.2077 3.8550 -1.3593
27 6 5.7046 3.3405 -0.0024
28 1 6.1883 2.3979 0.2536
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8032 2.2371 0.8899
33 1 1.8031 2.2371 -0.8900
34 1 3.4528 4.8663 -0.9636
35 1 2.3550 4.0591 0.1885
36 1 3.3057 6.2181 1.0957
37 1 3.7468 4.8009 2.0828
38 1 7.7434 5.8950 0.6872
39 1 8.2881 4.1895 0.6903
40 1 8.4133 4.5382 -2.8396
41 1 9.3600 5.0333 -1.4160
42 1 10.5244 2.8869 -2.5557
43 1 12.3766 -1.2239 -2.3577
44 1 6.5843 3.0240 -1.9559
45 1 5.3991 4.3580 -1.8896
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001217219865.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:29
Heat of formation + Delta-G solvation = -99.287926 kcal
Electronic energy + Delta-G solvation = -29265.395721 eV
Core-core repulsion = 25216.477307 eV
Total energy + Delta-G solvation = -4048.918414 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.140 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.15325 -40.73859 -39.59558 -37.61575 -36.08184 -35.85853 -33.85287 -32.92856
-31.41325 -29.76974 -29.65613 -29.19919 -27.78427 -25.81773 -24.53810 -22.72443
-22.30980 -21.31948 -20.21225 -19.96611 -18.68015 -18.27888 -17.80609 -17.45369
-17.16939 -16.93778 -16.72339 -16.43178 -16.27258 -15.75892 -15.51843 -15.23507
-15.08126 -14.80841 -14.65145 -14.56344 -14.34158 -14.11950 -13.88881 -13.72251
-13.44988 -13.40515 -13.09734 -13.03232 -12.69656 -12.57579 -12.47499 -12.42748
-12.27175 -12.02270 -11.60714 -11.43450 -11.22362 -11.03469 -10.87353 -10.79621
-10.26015 -9.70773 -9.27100 -8.77875 -8.44840 -6.05840 0.43087 1.27106
1.32495 1.39334 1.41845 1.61401 1.77630 1.89707 2.19975 2.63068
2.91384 2.94967 3.12036 3.27183 3.44033 3.60067 3.90361 3.94552
3.96573 4.07963 4.17677 4.19906 4.24692 4.35310 4.37190 4.37727
4.39575 4.46126 4.58398 4.70084 4.75283 4.80806 4.85735 4.90548
4.93317 5.03705 5.37599 5.49621 5.74923 5.79371 5.93439 6.18285
6.22041 6.53858 6.85004 6.98852 7.35016 7.92240 8.73266
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.011826 B = 0.003381 C = 0.002739
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2367.138168 B = 8278.943375 C =10219.268970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 S -0.291 6.291
3 C -0.096 4.096
4 C 0.512 3.488
5 O -0.572 6.572
6 N -0.600 5.600
7 C 0.064 3.936
8 C 0.043 3.957
9 O -0.371 6.371
10 C 0.090 3.910
11 H 0.079 0.921
12 C 0.052 3.948
13 N -0.482 5.482
14 C 0.038 3.962
15 C 0.413 3.587
16 O -0.607 6.607
17 N -0.587 5.587
18 C -0.327 4.327
19 H 0.048 0.952
20 C -0.018 4.018
21 N -0.936 5.936
22 Si 0.968 3.032
23 H -0.254 1.254
24 H -0.276 1.276
25 H -0.230 1.230
26 C 0.061 3.939
27 C 0.107 3.893
28 H 0.075 0.925
29 H 0.094 0.906
30 H 0.108 0.892
31 H 0.096 0.904
32 H 0.147 0.853
33 H 0.143 0.857
34 H 0.091 0.909
35 H 0.132 0.868
36 H 0.145 0.855
37 H 0.057 0.943
38 H 0.115 0.885
39 H 0.046 0.954
40 H 0.120 0.880
41 H 0.128 0.872
42 H 0.390 0.610
43 H 0.279 0.721
44 H 0.033 0.967
45 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.770 19.012 2.439 29.005
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.283 4.283
2 S -0.067 6.067
3 C -0.246 4.246
4 C 0.300 3.700
5 O -0.450 6.450
6 N -0.333 5.333
7 C -0.057 4.057
8 C -0.033 4.033
9 O -0.289 6.289
10 C 0.030 3.970
11 H 0.097 0.903
12 C -0.075 4.075
13 N -0.204 5.204
14 C -0.094 4.094
15 C 0.201 3.799
16 O -0.492 6.492
17 N -0.228 5.228
18 C -0.456 4.456
19 H 0.066 0.934
20 C -0.216 4.216
21 N -0.577 5.577
22 Si 0.788 3.212
23 H -0.179 1.179
24 H -0.201 1.201
25 H -0.153 1.153
26 C -0.068 4.068
27 C 0.001 3.999
28 H 0.093 0.907
29 H 0.113 0.887
30 H 0.127 0.873
31 H 0.115 0.885
32 H 0.165 0.835
33 H 0.161 0.839
34 H 0.109 0.891
35 H 0.150 0.850
36 H 0.163 0.837
37 H 0.075 0.925
38 H 0.133 0.867
39 H 0.065 0.935
40 H 0.138 0.862
41 H 0.146 0.854
42 H 0.225 0.775
43 H 0.088 0.912
44 H 0.052 0.948
45 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -21.181 17.734 2.657 27.752
hybrid contribution 0.610 -0.957 -0.177 1.149
sum -20.571 16.777 2.480 26.660
Atomic orbital electron populations
1.23538 0.90395 1.07718 1.06612 1.88275 1.10499 1.09595 1.98301
1.23466 0.93803 0.97451 1.09930 1.20671 0.90854 0.82704 0.75751
1.90839 1.63741 1.40162 1.50243 1.47785 1.06175 1.06433 1.72943
1.22972 0.95468 0.85406 1.01855 1.23284 0.81959 1.01537 0.96563
1.87842 1.17543 1.31355 1.92200 1.23309 0.90713 0.86083 0.96874
0.90339 1.23172 0.94488 1.02555 0.87334 1.64211 1.04124 1.43819
1.08279 1.22519 0.94847 0.89391 1.02649 1.22154 0.82075 0.92048
0.83654 1.90587 1.49546 1.67207 1.41909 1.42159 1.24151 1.10579
1.45909 1.18961 1.09324 0.87287 1.30043 0.93360 1.26203 0.99065
0.96963 0.99404 1.69831 1.28662 1.13325 1.45873 0.85319 0.78614
0.78940 0.78336 1.17867 1.20129 1.15299 1.22643 0.94318 0.93440
0.96386 1.22194 0.80710 1.00233 0.96782 0.90699 0.88663 0.87300
0.88460 0.83520 0.83930 0.89090 0.84994 0.83728 0.92482 0.86660
0.93535 0.86169 0.85409 0.77453 0.91163 0.94813 0.89867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.35 10.76 113.37 1.22 -0.13 16
2 S -0.29 -7.34 21.52 -56.49 -1.22 -8.55 16
3 C -0.10 -1.80 4.77 71.24 0.34 -1.46 16
4 C 0.51 16.09 7.70 87.66 0.67 16.76 16
5 O -0.57 -26.41 15.27 -3.04 -0.05 -26.46 16
6 N -0.60 -16.26 2.72 -793.29 -2.16 -18.42 16
7 C 0.06 0.91 6.26 86.46 0.54 1.45 16
8 C 0.04 0.60 7.03 72.16 0.51 1.11 16
9 O -0.37 -8.48 10.10 -148.98 -1.50 -9.98 16
10 C 0.09 2.61 4.12 31.94 0.13 2.74 16
11 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
12 C 0.05 1.57 5.75 86.93 0.50 2.07 16
13 N -0.48 -14.88 5.42 -889.93 -4.82 -19.71 16
14 C 0.04 1.18 5.85 85.56 0.50 1.68 16
15 C 0.41 18.66 6.43 87.66 0.56 19.22 16
16 O -0.61 -32.97 10.34 -3.08 -0.03 -33.00 16
17 N -0.59 -28.23 5.09 -306.98 -1.56 -29.79 16
18 C -0.33 -19.81 10.16 84.04 0.85 -18.95 16
19 H 0.05 3.54 7.39 -2.91 -0.02 3.52 16
20 C -0.02 -1.03 5.50 84.93 0.47 -0.57 16
21 N -0.94 -58.70 13.96 21.66 0.30 -58.40 16
22 Si 0.97 40.00 27.74 68.60 1.90 41.90 16
23 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16
24 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16
25 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16
26 C 0.06 2.13 5.60 86.36 0.48 2.61 16
27 C 0.11 3.76 2.58 45.87 0.12 3.88 16
28 H 0.07 3.65 5.42 -2.39 -0.01 3.64 16
29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16
31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16
32 H 0.15 1.57 7.60 -2.39 -0.02 1.55 16
33 H 0.14 1.70 7.99 -2.39 -0.02 1.68 16
34 H 0.09 1.21 7.56 -2.39 -0.02 1.20 16
35 H 0.13 0.74 5.96 -2.38 -0.01 0.73 16
36 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16
37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
38 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16
39 H 0.05 1.67 6.58 -2.38 -0.02 1.66 16
40 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16
41 H 0.13 3.15 8.08 -2.39 -0.02 3.13 16
42 H 0.39 15.52 5.76 -92.71 -0.53 14.98 16
43 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16
44 H 0.03 1.48 5.82 -2.38 -0.01 1.46 16
45 H 0.08 2.51 7.25 -2.39 -0.02 2.50 16
Total: -1.00 -93.48 364.22 -1.81 -95.29
By element:
Atomic # 1 Polarization: 36.26 SS G_CDS: 0.43 Total: 36.69 kcal
Atomic # 6 Polarization: 23.52 SS G_CDS: 6.90 Total: 30.42 kcal
Atomic # 7 Polarization: -118.07 SS G_CDS: -8.25 Total: -126.31 kcal
Atomic # 8 Polarization: -67.86 SS G_CDS: -1.58 Total: -69.44 kcal
Atomic # 14 Polarization: 40.00 SS G_CDS: 1.90 Total: 41.90 kcal
Atomic # 16 Polarization: -7.34 SS G_CDS: -1.22 Total: -8.55 kcal
Total: -93.48 -1.81 -95.29 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001217219865.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.999 kcal
(2) G-P(sol) polarization free energy of solvation -93.480 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.479 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.289 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.288 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds