Wall clock time and date at job start Sat Apr 11 2020 06:51:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.35996 * 126.29123 * 2 1
4 4 N 1.30215 * 110.17656 * 180.02562 * 3 2 1
5 5 C 1.35432 * 109.57796 * 0.02562 * 4 3 2
6 6 C 1.39900 * 133.80944 * 179.97438 * 5 4 3
7 7 C 1.36982 * 118.35793 * 179.72530 * 6 5 4
8 8 C 1.39729 * 119.60096 * 0.53388 * 7 6 5
9 9 C 1.47974 * 119.43082 * 179.72184 * 8 7 6
10 10 O 1.21539 * 119.99977 * 334.19586 * 9 8 7
11 11 N 1.34778 * 120.00004 * 154.18604 * 9 8 7
12 12 C 1.46969 * 120.59537 * 7.68181 * 11 9 8
13 13 C 1.53367 * 108.63357 * 235.20062 * 12 11 9
14 14 N 1.46964 * 108.63560 * 310.57516 * 13 12 11
15 15 C 1.34777 * 120.58866 * 235.20245 * 14 13 12
16 16 O 1.21685 * 120.00691 * 7.05313 * 15 14 13
17 17 C 1.46379 * 119.99935 * 187.04868 * 15 14 13
18 18 H 1.08000 * 119.99691 * 354.77753 * 17 15 14
19 19 C 1.40044 * 120.00479 * 174.78013 * 17 15 14
20 20 N 1.30672 * 119.99633 * 359.97438 * 19 17 15
21 21 Si 1.86796 * 120.00276 * 180.02562 * 19 17 15
22 22 H 1.48493 * 109.47042 * 269.99658 * 21 19 17
23 23 H 1.48503 * 109.47120 * 29.99901 * 21 19 17
24 24 H 1.48505 * 109.47170 * 149.99367 * 21 19 17
25 25 C 1.46959 * 118.81317 * 55.47701 * 14 13 12
26 26 C 1.46960 * 120.59674 * 187.64910 * 11 9 8
27 27 N 1.32649 * 121.14326 * 359.45269 * 8 7 6
28 28 C 1.31889 * 121.36586 * 0.27043 * 27 8 7
29 29 H 1.08995 * 109.47565 * 269.95277 * 1 2 3
30 30 H 1.09005 * 109.47332 * 29.96086 * 1 2 3
31 31 H 1.09006 * 109.47096 * 149.95572 * 1 2 3
32 32 H 1.08001 * 124.91106 * 0.02562 * 3 2 1
33 33 H 1.07997 * 120.81693 * 359.97438 * 6 5 4
34 34 H 1.07999 * 120.20214 * 180.26580 * 7 6 5
35 35 H 1.08996 * 109.61316 * 115.45509 * 12 11 9
36 36 H 1.09006 * 109.60767 * 354.94519 * 12 11 9
37 37 H 1.09004 * 109.60749 * 190.82637 * 13 12 11
38 38 H 1.09007 * 109.60944 * 70.31639 * 13 12 11
39 39 H 0.97000 * 120.00126 * 180.02562 * 20 19 17
40 40 H 1.08999 * 109.60889 * 64.26996 * 25 14 13
41 41 H 1.09003 * 109.60988 * 184.77796 * 25 14 13
42 42 H 1.08992 * 109.61838 * 244.54647 * 26 11 9
43 43 H 1.09004 * 109.60990 * 5.05873 * 26 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2700 1.0962 0.0000
4 7 3.5209 0.7347 -0.0005
5 6 3.6028 -0.6171 -0.0015
6 6 4.6690 -1.5228 -0.0028
7 6 4.3845 -2.8628 0.0022
8 6 3.0527 -3.2856 -0.0028
9 6 2.7497 -4.7340 -0.0035
10 8 3.5545 -5.5230 -0.4584
11 7 1.5813 -5.1783 0.5004
12 6 0.5302 -4.2314 0.8989
13 6 0.1530 -4.5045 2.3601
14 7 -0.0930 -5.9445 2.5204
15 6 -1.2615 -6.3887 3.0243
16 8 -2.1713 -5.6075 3.2310
17 6 -1.4363 -7.8111 3.3228
18 1 -0.6616 -8.5168 3.0615
19 6 -2.6079 -8.2568 3.9471
20 7 -3.5450 -7.4029 4.2636
21 14 -2.8306 -10.0718 4.3286
22 1 -3.4848 -10.7430 3.1769
23 1 -1.5040 -10.6922 4.5749
24 1 -3.6798 -10.2230 5.5374
25 6 0.9600 -6.8911 2.1271
26 6 1.3351 -6.6182 0.6605
27 7 2.0553 -2.4111 -0.0015
28 6 2.2815 -1.1118 -0.0009
29 1 -0.3634 -0.0008 1.0276
30 1 -0.3634 0.8904 -0.5132
31 1 -0.3633 -0.8896 -0.5145
32 1 1.9219 2.1186 0.0004
33 1 5.6911 -1.1741 -0.0037
34 1 5.1847 -3.5881 0.0057
35 1 -0.3449 -4.3676 0.2636
36 1 0.9010 -3.2110 0.8013
37 1 -0.7492 -3.9485 2.6151
38 1 0.9710 -4.1984 3.0124
39 1 -4.3564 -7.7115 4.6963
40 1 1.8340 -6.7510 2.7632
41 1 0.5909 -7.9117 2.2281
42 1 0.5173 -6.9244 0.0083
43 1 2.2373 -7.1742 0.4056
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362432786.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:51:53
Heat of formation + Delta-G solvation = 61.055588 kcal
Electronic energy + Delta-G solvation = -29936.184700 eV
Core-core repulsion = 25791.068102 eV
Total energy + Delta-G solvation = -4145.116597 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.143 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.71927 -40.31000 -38.44359 -37.69859 -35.88057 -34.91233 -33.15058 -32.58308
-32.15191 -30.98221 -30.14646 -27.51687 -27.50384 -26.04083 -24.92852 -23.66244
-22.98867 -21.97953 -21.25797 -20.25516 -18.96937 -18.18676 -17.82150 -17.08066
-16.55865 -16.40690 -15.83800 -15.54446 -15.33858 -15.01883 -14.85351 -14.51511
-14.26397 -14.11185 -13.91303 -13.82462 -13.55457 -13.23142 -12.99244 -12.96423
-12.69104 -12.39233 -11.91795 -11.73025 -11.54532 -11.24865 -11.16806 -11.01126
-10.98460 -10.75697 -10.70889 -10.27916 -10.22663 -10.08207 -9.16618 -9.01236
-8.90157 -8.80316 -8.58060 -7.65415 -7.21750 -6.25793 -4.70957 0.18928
0.93268 1.92348 2.21644 2.80535 3.01147 3.10587 3.17987 3.20772
3.54008 3.69229 3.88204 4.04817 4.19759 4.37244 4.49262 4.56190
4.60488 4.68576 4.82176 4.87436 5.18136 5.20814 5.40566 5.44045
5.52160 5.58369 5.65318 5.73293 5.82210 5.87130 5.99208 6.01949
6.12740 6.31070 6.37483 6.45863 6.51086 6.58185 6.78691 7.30204
7.33025 7.39681 7.51151 7.55174 8.05969 8.16549 8.27749 8.96335
9.34982 10.50452 10.68946
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.017937 B = 0.002891 C = 0.002559
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1560.678626 B = 9684.314797 C =10938.756251
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.481 5.481
3 C 0.281 3.719
4 N -0.492 5.492
5 C 0.020 3.980
6 C -0.023 4.023
7 C -0.127 4.127
8 C 0.129 3.871
9 C 0.570 3.430
10 O -0.539 6.539
11 N -0.580 5.580
12 C 0.052 3.948
13 C 0.107 3.893
14 N -0.644 5.644
15 C 0.560 3.440
16 O -0.577 6.577
17 C -0.544 4.544
18 H 0.073 0.927
19 C 0.088 3.912
20 N -0.768 5.768
21 Si 0.907 3.093
22 H -0.271 1.271
23 H -0.264 1.264
24 H -0.279 1.279
25 C 0.111 3.889
26 C 0.093 3.907
27 N -0.439 5.439
28 C 0.229 3.771
29 H 0.083 0.917
30 H 0.092 0.908
31 H 0.093 0.907
32 H 0.224 0.776
33 H 0.149 0.851
34 H 0.156 0.844
35 H 0.067 0.933
36 H 0.147 0.853
37 H 0.092 0.908
38 H 0.041 0.959
39 H 0.269 0.731
40 H 0.047 0.953
41 H 0.106 0.894
42 H 0.074 0.926
43 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.248 14.429 -8.837 20.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.174 5.174
3 C -0.005 4.005
4 N -0.211 5.211
5 C -0.101 4.101
6 C -0.051 4.051
7 C -0.150 4.150
8 C -0.019 4.019
9 C 0.356 3.644
10 O -0.416 6.416
11 N -0.310 5.310
12 C -0.071 4.071
13 C -0.018 4.018
14 N -0.383 5.383
15 C 0.366 3.634
16 O -0.460 6.460
17 C -0.581 4.581
18 H 0.091 0.909
19 C -0.132 4.132
20 N -0.396 5.396
21 Si 0.731 3.269
22 H -0.197 1.197
23 H -0.188 1.188
24 H -0.205 1.205
25 C -0.014 4.014
26 C -0.030 4.030
27 N -0.155 5.155
28 C -0.007 4.007
29 H 0.101 0.899
30 H 0.110 0.890
31 H 0.112 0.888
32 H 0.240 0.760
33 H 0.167 0.833
34 H 0.174 0.826
35 H 0.085 0.915
36 H 0.163 0.837
37 H 0.110 0.890
38 H 0.059 0.941
39 H 0.079 0.921
40 H 0.066 0.934
41 H 0.124 0.876
42 H 0.092 0.908
43 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 10.602 14.738 -8.861 20.202
hybrid contribution -0.266 -1.037 0.267 1.103
sum 10.336 13.701 -8.594 19.194
Atomic orbital electron populations
1.22161 0.74620 1.05302 1.04507 1.45104 1.08047 1.04345 1.59861
1.25530 0.84892 0.93218 0.96852 1.70445 1.18217 1.10461 1.21987
1.19830 0.93198 0.91478 1.05602 1.20451 0.98499 0.90608 0.95510
1.21494 0.96772 0.96119 1.00609 1.21032 0.89372 0.92734 0.98791
1.17740 0.81883 0.85918 0.78826 1.90778 1.48285 1.55402 1.47128
1.47958 1.14727 1.08195 1.60159 1.23559 0.90352 0.96829 0.96401
1.21533 1.00730 0.85657 0.93837 1.48198 1.17207 1.03512 1.69359
1.18273 0.79142 0.89706 0.76292 1.90581 1.40073 1.58024 1.57338
1.20971 1.03795 0.91539 1.41774 0.90869 1.25726 0.95003 0.98867
0.93604 1.70009 1.05316 1.34863 1.29436 0.86381 0.79040 0.83053
0.78393 1.19671 1.18803 1.20451 1.21898 0.91262 0.96326 0.91952
1.22333 1.02120 0.79870 0.98662 1.66263 1.34755 0.99569 1.14912
1.19096 0.89442 0.87887 1.04282 0.89856 0.88971 0.88823 0.76000
0.83299 0.82615 0.91479 0.83739 0.88958 0.94102 0.92055 0.93443
0.87605 0.90817 0.88795
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.44 11.19 59.85 0.67 1.11 16
2 N -0.48 -4.27 3.20 -124.97 -0.40 -4.67 16
3 C 0.28 2.12 12.49 -89.73 -1.12 1.00 16
4 N -0.49 -5.36 11.27 -11.93 -0.13 -5.49 16
5 C 0.02 0.24 7.25 -84.58 -0.61 -0.37 16
6 C -0.02 -0.25 10.16 -39.42 -0.40 -0.65 16
7 C -0.13 -1.46 9.54 -39.48 -0.38 -1.84 16
8 C 0.13 1.79 6.49 -82.97 -0.54 1.25 16
9 C 0.57 9.18 7.56 -12.27 -0.09 9.09 16
10 O -0.54 -9.56 16.02 5.33 0.09 -9.47 16
11 N -0.58 -9.62 2.95 -173.28 -0.51 -10.13 16
12 C 0.05 0.86 6.32 -3.60 -0.02 0.84 16
13 C 0.11 2.09 6.60 -3.60 -0.02 2.07 16
14 N -0.64 -14.46 2.94 -173.87 -0.51 -14.97 16
15 C 0.56 15.56 7.61 -12.98 -0.10 15.46 16
16 O -0.58 -18.19 14.46 5.20 0.08 -18.12 16
17 C -0.54 -14.87 8.86 -35.63 -0.32 -15.18 16
18 H 0.07 1.81 5.69 -52.49 -0.30 1.51 16
19 C 0.09 2.39 5.50 -17.37 -0.10 2.30 16
20 N -0.77 -22.51 11.84 55.55 0.66 -21.85 16
21 Si 0.91 19.67 29.56 -169.99 -5.02 14.65 16
22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16
23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16
24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16
25 C 0.11 2.07 6.50 -3.37 -0.02 2.05 16
26 C 0.09 1.55 6.59 -3.37 -0.02 1.53 16
27 N -0.44 -5.93 6.34 -8.83 -0.06 -5.99 16
28 C 0.23 2.78 8.01 -155.74 -1.25 1.54 16
29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16
30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16
31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.22 0.51 8.06 -52.49 -0.42 0.09 16
33 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16
34 H 0.16 1.57 7.83 -52.49 -0.41 1.16 16
35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16
36 H 0.15 2.19 3.68 -89.56 -0.33 1.86 16
37 H 0.09 1.96 6.99 -51.93 -0.36 1.60 16
38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
39 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16
40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
41 H 0.11 2.01 5.37 -51.93 -0.28 1.73 16
42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
43 H 0.09 1.46 7.04 -51.93 -0.37 1.09 16
LS Contribution 358.57 15.07 5.40 5.40
Total: -1.00 -37.80 358.57 -9.72 -47.52
By element:
Atomic # 1 Polarization: 7.91 SS G_CDS: -4.99 Total: 2.92 kcal
Atomic # 6 Polarization: 24.51 SS G_CDS: -4.32 Total: 20.19 kcal
Atomic # 7 Polarization: -62.15 SS G_CDS: -0.95 Total: -63.10 kcal
Atomic # 8 Polarization: -27.75 SS G_CDS: 0.16 Total: -27.59 kcal
Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -37.80 -9.72 -47.52 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362432786.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.580 kcal
(2) G-P(sol) polarization free energy of solvation -37.803 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.777 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds