Wall clock time and date at job start Sat Apr 11 2020 06:51:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.35996 * 126.29123 * 2 1
4 4 N 1.30215 * 110.17656 * 180.02562 * 3 2 1
5 5 C 1.35432 * 109.57796 * 0.02562 * 4 3 2
6 6 C 1.39900 * 133.80944 * 179.97438 * 5 4 3
7 7 C 1.36982 * 118.35793 * 179.72530 * 6 5 4
8 8 C 1.39729 * 119.60096 * 0.53388 * 7 6 5
9 9 C 1.47974 * 119.43082 * 179.72184 * 8 7 6
10 10 O 1.21539 * 119.99977 * 334.19586 * 9 8 7
11 11 N 1.34778 * 120.00004 * 154.18604 * 9 8 7
12 12 C 1.46969 * 120.59537 * 7.68181 * 11 9 8
13 13 C 1.53367 * 108.63357 * 235.20062 * 12 11 9
14 14 N 1.46964 * 108.63560 * 310.57516 * 13 12 11
15 15 C 1.34777 * 120.58866 * 235.20245 * 14 13 12
16 16 O 1.21685 * 120.00691 * 7.05313 * 15 14 13
17 17 C 1.46379 * 119.99935 * 187.04868 * 15 14 13
18 18 H 1.08000 * 119.99691 * 354.77753 * 17 15 14
19 19 C 1.40044 * 120.00479 * 174.78013 * 17 15 14
20 20 N 1.30672 * 119.99633 * 359.97438 * 19 17 15
21 21 Si 1.86796 * 120.00276 * 180.02562 * 19 17 15
22 22 H 1.48493 * 109.47042 * 269.99658 * 21 19 17
23 23 H 1.48503 * 109.47120 * 29.99901 * 21 19 17
24 24 H 1.48505 * 109.47170 * 149.99367 * 21 19 17
25 25 C 1.46959 * 118.81317 * 55.47701 * 14 13 12
26 26 C 1.46960 * 120.59674 * 187.64910 * 11 9 8
27 27 N 1.32649 * 121.14326 * 359.45269 * 8 7 6
28 28 C 1.31889 * 121.36586 * 0.27043 * 27 8 7
29 29 H 1.08995 * 109.47565 * 269.95277 * 1 2 3
30 30 H 1.09005 * 109.47332 * 29.96086 * 1 2 3
31 31 H 1.09006 * 109.47096 * 149.95572 * 1 2 3
32 32 H 1.08001 * 124.91106 * 0.02562 * 3 2 1
33 33 H 1.07997 * 120.81693 * 359.97438 * 6 5 4
34 34 H 1.07999 * 120.20214 * 180.26580 * 7 6 5
35 35 H 1.08996 * 109.61316 * 115.45509 * 12 11 9
36 36 H 1.09006 * 109.60767 * 354.94519 * 12 11 9
37 37 H 1.09004 * 109.60749 * 190.82637 * 13 12 11
38 38 H 1.09007 * 109.60944 * 70.31639 * 13 12 11
39 39 H 0.97000 * 120.00126 * 180.02562 * 20 19 17
40 40 H 1.08999 * 109.60889 * 64.26996 * 25 14 13
41 41 H 1.09003 * 109.60988 * 184.77796 * 25 14 13
42 42 H 1.08992 * 109.61838 * 244.54647 * 26 11 9
43 43 H 1.09004 * 109.60990 * 5.05873 * 26 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2700 1.0962 0.0000
4 7 3.5209 0.7347 -0.0005
5 6 3.6028 -0.6171 -0.0015
6 6 4.6690 -1.5228 -0.0028
7 6 4.3845 -2.8628 0.0022
8 6 3.0527 -3.2856 -0.0028
9 6 2.7497 -4.7340 -0.0035
10 8 3.5545 -5.5230 -0.4584
11 7 1.5813 -5.1783 0.5004
12 6 0.5302 -4.2314 0.8989
13 6 0.1530 -4.5045 2.3601
14 7 -0.0930 -5.9445 2.5204
15 6 -1.2615 -6.3887 3.0243
16 8 -2.1713 -5.6075 3.2310
17 6 -1.4363 -7.8111 3.3228
18 1 -0.6616 -8.5168 3.0615
19 6 -2.6079 -8.2568 3.9471
20 7 -3.5450 -7.4029 4.2636
21 14 -2.8306 -10.0718 4.3286
22 1 -3.4848 -10.7430 3.1769
23 1 -1.5040 -10.6922 4.5749
24 1 -3.6798 -10.2230 5.5374
25 6 0.9600 -6.8911 2.1271
26 6 1.3351 -6.6182 0.6605
27 7 2.0553 -2.4111 -0.0015
28 6 2.2815 -1.1118 -0.0009
29 1 -0.3634 -0.0008 1.0276
30 1 -0.3634 0.8904 -0.5132
31 1 -0.3633 -0.8896 -0.5145
32 1 1.9219 2.1186 0.0004
33 1 5.6911 -1.1741 -0.0037
34 1 5.1847 -3.5881 0.0057
35 1 -0.3449 -4.3676 0.2636
36 1 0.9010 -3.2110 0.8013
37 1 -0.7492 -3.9485 2.6151
38 1 0.9710 -4.1984 3.0124
39 1 -4.3564 -7.7115 4.6963
40 1 1.8340 -6.7510 2.7632
41 1 0.5909 -7.9117 2.2281
42 1 0.5173 -6.9244 0.0083
43 1 2.2373 -7.1742 0.4056
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001362432786.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:51:52
Heat of formation + Delta-G solvation = 36.230763 kcal
Electronic energy + Delta-G solvation = -29937.261185 eV
Core-core repulsion = 25791.068102 eV
Total energy + Delta-G solvation = -4146.193083 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.143 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-43.49995 -41.54446 -39.91593 -38.99039 -37.59158 -35.68865 -34.83314 -34.55043
-33.08575 -32.41297 -31.18337 -29.17872 -28.11980 -27.82521 -25.96854 -24.88342
-24.19936 -23.39560 -22.08416 -21.71829 -20.48065 -19.11657 -18.93627 -18.28568
-17.98610 -17.57479 -17.37111 -16.91697 -16.54096 -16.33514 -16.02589 -15.94544
-15.68009 -15.61975 -15.05902 -14.71991 -14.64494 -14.39922 -14.21345 -14.03318
-13.66005 -13.54340 -13.46577 -13.29117 -13.15213 -12.88057 -12.74461 -12.47370
-12.27498 -12.05603 -12.02875 -11.95232 -11.75647 -11.36521 -10.94391 -10.26394
-10.05182 -9.83388 -9.74890 -9.65420 -9.01004 -8.30523 -6.85299 -0.69844
0.07120 1.19537 1.35053 1.40820 1.41474 1.56595 1.73182 1.86810
2.23564 2.44189 2.62576 2.69065 2.90107 3.17444 3.38008 3.55394
3.57335 3.85197 3.94122 3.95923 4.09102 4.13381 4.19132 4.34472
4.41957 4.45606 4.45931 4.58133 4.69752 4.73349 4.75401 4.82778
4.92220 4.98153 5.07957 5.11294 5.28822 5.38451 5.53552 5.69638
5.85517 6.09614 6.17746 6.35189 6.43890 6.60319 6.86922 6.90155
7.36090 8.43166 8.65057
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.017937 B = 0.002891 C = 0.002559
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1560.678626 B = 9684.314797 C =10938.756251
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.071 3.929
2 N -0.483 5.483
3 C 0.306 3.694
4 N -0.524 5.524
5 C 0.013 3.987
6 C -0.021 4.021
7 C -0.122 4.122
8 C 0.101 3.899
9 C 0.574 3.426
10 O -0.557 6.557
11 N -0.587 5.587
12 C 0.070 3.930
13 C 0.109 3.891
14 N -0.647 5.647
15 C 0.543 3.457
16 O -0.628 6.628
17 C -0.568 4.568
18 H 0.095 0.905
19 C 0.030 3.970
20 N -0.821 5.821
21 Si 0.994 3.006
22 H -0.262 1.262
23 H -0.247 1.247
24 H -0.275 1.275
25 C 0.111 3.889
26 C 0.101 3.899
27 N -0.453 5.453
28 C 0.206 3.794
29 H 0.085 0.915
30 H 0.132 0.868
31 H 0.077 0.923
32 H 0.276 0.724
33 H 0.177 0.823
34 H 0.168 0.832
35 H 0.054 0.946
36 H 0.166 0.834
37 H 0.068 0.932
38 H 0.051 0.949
39 H 0.274 0.726
40 H 0.060 0.940
41 H 0.103 0.897
42 H 0.069 0.931
43 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.675 15.115 -9.409 21.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.174 5.174
3 C 0.020 3.980
4 N -0.243 5.243
5 C -0.109 4.109
6 C -0.048 4.048
7 C -0.146 4.146
8 C -0.046 4.046
9 C 0.362 3.638
10 O -0.435 6.435
11 N -0.317 5.317
12 C -0.053 4.053
13 C -0.015 4.015
14 N -0.384 5.384
15 C 0.349 3.651
16 O -0.516 6.516
17 C -0.604 4.604
18 H 0.113 0.887
19 C -0.185 4.185
20 N -0.451 5.451
21 Si 0.814 3.186
22 H -0.187 1.187
23 H -0.170 1.170
24 H -0.200 1.200
25 C -0.013 4.013
26 C -0.022 4.022
27 N -0.169 5.169
28 C -0.032 4.032
29 H 0.104 0.896
30 H 0.151 0.849
31 H 0.096 0.904
32 H 0.292 0.708
33 H 0.194 0.806
34 H 0.186 0.814
35 H 0.072 0.928
36 H 0.181 0.819
37 H 0.087 0.913
38 H 0.069 0.931
39 H 0.084 0.916
40 H 0.078 0.922
41 H 0.121 0.879
42 H 0.087 0.913
43 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges 12.081 15.429 -9.463 21.761
hybrid contribution -0.671 -1.015 0.399 1.280
sum 11.409 14.415 -9.064 20.497
Atomic orbital electron populations
1.22390 0.72947 1.06543 1.05064 1.45441 1.09093 1.03645 1.59247
1.26652 0.83824 0.94610 0.92880 1.70491 1.20067 1.09649 1.24136
1.20201 0.93438 0.92365 1.04851 1.20749 0.99651 0.89943 0.94458
1.21593 0.95940 0.96925 1.00106 1.20766 0.90537 0.91551 1.01706
1.18019 0.81045 0.86951 0.77772 1.90753 1.48619 1.56351 1.47791
1.47984 1.15111 1.07965 1.60682 1.23424 0.90105 0.98061 0.93739
1.21608 0.99899 0.83837 0.96166 1.48076 1.16694 1.05316 1.68297
1.18661 0.79981 0.90095 0.76315 1.90531 1.42290 1.59174 1.59558
1.21500 1.04935 0.91979 1.42002 0.88695 1.26958 0.94167 1.04667
0.92690 1.70178 1.06262 1.38013 1.30610 0.85064 0.79680 0.75568
0.78327 1.18685 1.17031 1.19968 1.22026 0.90362 0.95337 0.93552
1.22208 1.02616 0.80498 0.96908 1.65881 1.35074 1.00505 1.15451
1.19378 0.90730 0.87961 1.05087 0.89630 0.84935 0.90448 0.70842
0.80581 0.81450 0.92783 0.81871 0.91334 0.93123 0.91602 0.92155
0.87881 0.91286 0.87198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.68 11.19 127.77 1.43 2.11 16
2 N -0.48 -7.51 3.20 -549.29 -1.76 -9.27 16
3 C 0.31 3.57 12.49 180.04 2.25 5.82 16
4 N -0.52 -10.10 11.27 -191.65 -2.16 -12.25 16
5 C 0.01 0.30 7.25 39.69 0.29 0.58 16
6 C -0.02 -0.41 10.16 22.38 0.23 -0.18 16
7 C -0.12 -2.69 9.54 22.34 0.21 -2.48 16
8 C 0.10 2.77 6.49 41.96 0.27 3.05 16
9 C 0.57 18.35 7.56 86.82 0.66 19.00 16
10 O -0.56 -19.44 16.02 -3.84 -0.06 -19.50 16
11 N -0.59 -19.51 2.95 -820.41 -2.42 -21.92 16
12 C 0.07 2.38 6.32 86.41 0.55 2.92 16
13 C 0.11 4.42 6.60 86.41 0.57 4.99 16
14 N -0.65 -29.86 2.94 -822.23 -2.42 -32.28 16
15 C 0.54 31.33 7.61 86.36 0.66 31.98 16
16 O -0.63 -41.65 14.46 -4.30 -0.06 -41.72 16
17 C -0.57 -31.52 8.86 24.83 0.22 -31.30 16
18 H 0.10 4.67 5.69 -2.91 -0.02 4.65 16
19 C 0.03 1.67 5.50 85.30 0.47 2.14 16
20 N -0.82 -49.67 11.84 21.83 0.26 -49.41 16
21 Si 0.99 40.30 29.56 68.60 2.03 42.33 16
22 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16
23 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16
24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16
25 C 0.11 4.15 6.50 86.57 0.56 4.71 16
26 C 0.10 3.33 6.59 86.57 0.57 3.90 16
27 N -0.45 -12.13 6.34 -181.84 -1.15 -13.28 16
28 C 0.21 4.78 8.01 134.06 1.07 5.86 16
29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16
30 H 0.13 0.19 8.14 -2.38 -0.02 0.17 16
31 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16
32 H 0.28 -0.18 8.06 -2.91 -0.02 -0.20 16
33 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16
34 H 0.17 3.17 7.83 -2.91 -0.02 3.15 16
35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16
36 H 0.17 5.03 3.68 -76.70 -0.28 4.75 16
37 H 0.07 3.09 6.99 -2.38 -0.02 3.08 16
38 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16
39 H 0.27 15.03 8.29 -92.71 -0.77 14.26 16
40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
41 H 0.10 3.88 5.37 -2.39 -0.01 3.87 16
42 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16
43 H 0.11 3.31 7.04 -2.38 -0.02 3.29 16
Total: -1.00 -86.03 358.57 3.06 -82.97
By element:
Atomic # 1 Polarization: 20.41 SS G_CDS: 0.80 Total: 21.21 kcal
Atomic # 6 Polarization: 43.11 SS G_CDS: 10.01 Total: 53.11 kcal
Atomic # 7 Polarization: -128.77 SS G_CDS: -9.65 Total: -138.41 kcal
Atomic # 8 Polarization: -61.09 SS G_CDS: -0.12 Total: -61.22 kcal
Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal
Total: -86.03 3.06 -82.97 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362432786.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.201 kcal
(2) G-P(sol) polarization free energy of solvation -86.035 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.971 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.231 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds