Wall clock time and date at job start Sat Apr 11 2020 06:52:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35999 * 116.99902 * 2 1
4 4 C 1.38617 * 120.87892 * 0.23255 * 3 2 1
5 5 N 1.32523 * 119.12054 * 180.26790 * 4 3 2
6 6 C 1.31745 * 121.02829 * 359.74890 * 5 4 3
7 7 N 1.31798 * 121.94537 * 359.97438 * 6 5 4
8 8 C 1.32821 * 120.75687 * 0.02562 * 7 6 5
9 9 N 1.39202 * 120.54431 * 179.97438 * 8 7 6
10 10 C 1.34775 * 120.00034 * 359.97438 * 9 8 7
11 11 O 1.21576 * 120.00089 * 359.97438 * 10 9 8
12 12 N 1.34772 * 119.99797 * 180.02562 * 10 9 8
13 13 C 1.46506 * 120.00261 * 0.02562 * 12 10 9
14 14 C 1.50699 * 109.46984 * 270.00419 * 13 12 10
15 15 H 1.08001 * 119.99815 * 359.97438 * 14 13 12
16 16 C 1.37873 * 120.00137 * 180.02562 * 14 13 12
17 17 N 1.31520 * 120.00352 * 179.97438 * 16 14 13
18 18 Si 1.86797 * 119.99892 * 359.97438 * 16 14 13
19 19 H 1.48493 * 109.47283 * 90.00334 * 18 16 14
20 20 H 1.48498 * 109.47422 * 210.00217 * 18 16 14
21 21 H 1.48504 * 109.47347 * 330.00432 * 18 16 14
22 22 C 1.46501 * 119.99994 * 180.02562 * 12 10 9
23 23 C 1.50706 * 109.46941 * 269.99872 * 22 12 10
24 24 C 1.38227 * 119.61686 * 95.02727 * 23 22 12
25 25 C 1.38627 * 119.15663 * 179.70253 * 24 23 22
26 26 C 1.38669 * 118.42388 * 0.51169 * 25 24 23
27 27 C 1.38186 * 119.16143 * 359.50231 * 26 25 24
28 28 N 1.31856 * 119.61480 * 274.99645 * 23 22 12
29 29 H 1.09003 * 109.46957 * 179.97438 * 1 2 3
30 30 H 1.09001 * 109.47248 * 299.99319 * 1 2 3
31 31 H 1.08996 * 109.47746 * 59.99550 * 1 2 3
32 32 H 1.08001 * 120.44138 * 359.97438 * 4 3 2
33 33 H 1.07998 * 119.02723 * 180.02562 * 6 5 4
34 34 H 0.97000 * 119.99237 * 180.02562 * 9 8 7
35 35 H 1.08997 * 109.46723 * 29.99772 * 13 12 10
36 36 H 1.08997 * 109.47310 * 149.99801 * 13 12 10
37 37 H 0.96997 * 119.99706 * 179.97438 * 17 16 14
38 38 H 1.08997 * 109.47174 * 150.00085 * 22 12 10
39 39 H 1.08997 * 109.46998 * 29.99942 * 22 12 10
40 40 H 1.07998 * 120.41947 * 359.94797 * 24 23 22
41 41 H 1.08008 * 120.78691 * 180.26734 * 25 24 23
42 42 H 1.08002 * 120.42244 * 179.78749 * 26 25 24
43 43 H 1.07996 * 119.61757 * 180.25243 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0464 1.2118 0.0000
4 6 1.3093 2.3857 0.0048
5 7 1.9468 3.5475 -0.0007
6 6 3.2632 3.5997 -0.0058
7 7 4.0044 2.5099 -0.0051
8 6 3.4425 1.3064 0.0004
9 7 4.2296 0.1582 0.0006
10 6 5.5733 0.2623 -0.0053
11 8 6.0980 1.3590 -0.0112
12 7 6.3352 -0.8494 -0.0056
13 6 5.7029 -2.1709 -0.0002
14 6 5.4914 -2.6207 1.4225
15 1 5.7978 -1.9858 2.2408
16 6 4.9078 -3.8431 1.6796
17 7 4.7236 -4.2358 2.9211
18 14 4.3786 -4.9414 0.2643
19 1 5.5014 -5.8363 -0.1144
20 1 3.2124 -5.7602 0.6824
21 1 4.0012 -4.1008 -0.9003
22 6 7.7959 -0.7363 -0.0114
23 6 8.2913 -0.7008 -1.4342
24 6 8.5226 0.5165 -2.0469
25 6 8.9841 0.5379 -3.3539
26 6 9.1865 -0.6710 -4.0023
27 6 8.9332 -1.8488 -3.3255
28 7 8.4997 -1.8314 -2.0800
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5137 0.8900
31 1 -0.3634 0.5139 -0.8899
32 1 0.2298 2.3541 0.0083
33 1 3.7494 4.5641 -0.0099
34 1 3.8108 -0.7167 0.0042
35 1 4.7414 -2.1156 -0.5104
36 1 6.3469 -2.8840 -0.5148
37 1 4.3127 -5.0957 3.1019
38 1 8.2288 -1.5943 0.5028
39 1 8.0913 0.1803 0.4992
40 1 8.3497 1.4391 -1.5128
41 1 9.1777 1.4741 -3.8566
42 1 9.5421 -0.6920 -5.0219
43 1 9.0922 -2.7946 -3.8220
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001413582730.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:04
Heat of formation + Delta-G solvation = 31.683663 kcal
Electronic energy + Delta-G solvation = -30039.389567 eV
Core-core repulsion = 25892.999308 eV
Total energy + Delta-G solvation = -4146.390260 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.143 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.54732 -41.42670 -40.64713 -39.44288 -37.16353 -36.38987 -34.68426 -33.89365
-33.34853 -32.76619 -31.39961 -30.01816 -28.56566 -27.79342 -25.29870 -24.74504
-24.53399 -24.20222 -23.11434 -21.28042 -20.08230 -19.16156 -19.02501 -18.69791
-18.13985 -17.76201 -17.26881 -17.08939 -16.92606 -16.61361 -16.18740 -16.14615
-15.91903 -15.31705 -15.09513 -15.04850 -14.68272 -14.62916 -14.30649 -14.23993
-14.02182 -13.82714 -13.25360 -13.01199 -12.82674 -12.74315 -12.60681 -12.48379
-12.35816 -12.16834 -12.04506 -11.74886 -11.35389 -10.91099 -10.81983 -10.79735
-10.42210 -10.09694 -9.94031 -9.59783 -9.16027 -8.32675 -6.40907 -0.08281
0.01249 0.12271 0.39686 1.36035 1.39051 1.43280 1.48435 2.06600
2.08974 2.31295 2.57763 2.84108 3.00242 3.01081 3.16838 3.27224
3.38392 3.66906 3.72151 3.83129 4.03640 4.19060 4.26507 4.35289
4.41315 4.41772 4.49715 4.54825 4.60735 4.76871 4.77168 4.80177
4.89237 5.05542 5.18951 5.26192 5.29802 5.36997 5.43543 5.65152
5.82079 5.96878 6.13900 6.21461 6.62062 6.72598 7.10454 7.13636
7.25086 7.48298 8.83425
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.007446 B = 0.005168 C = 0.003454
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3759.295725 B = 5417.140298 C = 8103.969252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.328 6.328
3 C -0.014 4.014
4 C 0.095 3.905
5 N -0.519 5.519
6 C 0.280 3.720
7 N -0.510 5.510
8 C 0.382 3.618
9 N -0.654 5.654
10 C 0.699 3.301
11 O -0.565 6.565
12 N -0.599 5.599
13 C 0.225 3.775
14 C -0.542 4.542
15 H 0.032 0.968
16 C 0.026 3.974
17 N -0.936 5.936
18 Si 0.939 3.061
19 H -0.266 1.266
20 H -0.278 1.278
21 H -0.245 1.245
22 C 0.186 3.814
23 C 0.095 3.905
24 C -0.157 4.157
25 C -0.080 4.080
26 C -0.163 4.163
27 C 0.081 3.919
28 N -0.503 5.503
29 H 0.117 0.883
30 H 0.073 0.927
31 H 0.080 0.920
32 H 0.211 0.789
33 H 0.226 0.774
34 H 0.426 0.574
35 H 0.030 0.970
36 H 0.047 0.953
37 H 0.270 0.730
38 H 0.087 0.913
39 H 0.093 0.907
40 H 0.132 0.868
41 H 0.163 0.837
42 H 0.172 0.828
43 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.548 9.550 -14.600 17.803
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 O -0.240 6.240
3 C -0.068 4.068
4 C -0.069 4.069
5 N -0.236 5.236
6 C -0.008 4.008
7 N -0.231 5.231
8 C 0.139 3.861
9 N -0.304 5.304
10 C 0.400 3.600
11 O -0.440 6.440
12 N -0.333 5.333
13 C 0.103 3.897
14 C -0.581 4.581
15 H 0.051 0.949
16 C -0.174 4.174
17 N -0.575 5.575
18 Si 0.761 3.239
19 H -0.191 1.191
20 H -0.203 1.203
21 H -0.168 1.168
22 C 0.062 3.938
23 C -0.043 4.043
24 C -0.178 4.178
25 C -0.106 4.106
26 C -0.182 4.182
27 C -0.077 4.077
28 N -0.213 5.213
29 H 0.135 0.865
30 H 0.092 0.908
31 H 0.099 0.901
32 H 0.227 0.773
33 H 0.242 0.758
34 H 0.266 0.734
35 H 0.048 0.952
36 H 0.065 0.935
37 H 0.079 0.921
38 H 0.105 0.895
39 H 0.111 0.889
40 H 0.150 0.850
41 H 0.180 0.820
42 H 0.189 0.811
43 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges -2.794 9.960 -14.038 17.438
hybrid contribution -0.735 -1.280 -0.083 1.479
sum -3.529 8.680 -14.122 16.947
Atomic orbital electron populations
1.23512 0.75165 1.06228 1.03174 1.86120 1.24547 1.24410 1.88941
1.20217 0.91145 0.88940 1.06456 1.23689 1.02327 0.85051 0.95844
1.68336 1.11350 1.28329 1.15611 1.25330 0.86185 0.97029 0.92253
1.68502 1.40549 0.97054 1.17017 1.18299 0.85675 0.87259 0.94823
1.42841 1.05449 1.08381 1.73719 1.15977 0.81131 0.84704 0.78209
1.90896 1.71753 1.25048 1.56315 1.47080 1.05679 1.05370 1.75204
1.19511 0.93352 0.80983 0.95838 1.21446 1.41206 1.03659 0.91768
0.94947 1.25706 0.94763 0.98737 0.98152 1.70041 1.44354 1.22033
1.21072 0.85848 0.78690 0.79453 0.79870 1.19140 1.20305 1.16814
1.20057 0.78396 1.03759 0.91540 1.21553 0.96466 0.89332 0.96990
1.22151 0.99865 0.98691 0.97078 1.21971 0.94908 1.00303 0.93393
1.22527 1.00550 0.92520 1.02643 1.23302 0.94475 1.00196 0.89685
1.67476 1.12070 1.30865 1.10913 0.86485 0.90797 0.90123 0.77277
0.75819 0.73367 0.95177 0.93521 0.92119 0.89455 0.88858 0.84998
0.81963 0.81087 0.80469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.21 9.84 113.37 1.12 1.32 16
2 O -0.33 -9.17 9.86 -93.54 -0.92 -10.09 16
3 C -0.01 -0.41 6.75 22.77 0.15 -0.25 16
4 C 0.10 2.27 10.30 84.68 0.87 3.14 16
5 N -0.52 -13.67 10.43 -199.93 -2.09 -15.75 16
6 C 0.28 8.07 12.28 180.90 2.22 10.29 16
7 N -0.51 -18.82 8.03 -196.96 -1.58 -20.40 16
8 C 0.38 14.31 7.48 133.07 1.00 15.31 16
9 N -0.65 -27.11 5.25 -321.33 -1.69 -28.80 16
10 C 0.70 31.01 8.24 179.06 1.48 32.48 16
11 O -0.56 -25.94 14.17 -3.96 -0.06 -26.00 16
12 N -0.60 -26.19 2.44 -848.58 -2.07 -28.26 16
13 C 0.23 10.43 3.99 85.63 0.34 10.77 16
14 C -0.54 -29.85 9.94 25.60 0.25 -29.59 16
15 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16
16 C 0.03 1.44 5.47 84.65 0.46 1.91 16
17 N -0.94 -55.98 13.96 21.45 0.30 -55.68 16
18 Si 0.94 41.22 27.47 68.60 1.88 43.10 16
19 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16
21 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16
22 C 0.19 7.34 5.71 85.63 0.49 7.83 16
23 C 0.09 3.31 6.36 42.55 0.27 3.58 16
24 C -0.16 -4.75 9.72 22.36 0.22 -4.53 16
25 C -0.08 -1.81 10.18 22.47 0.23 -1.58 16
26 C -0.16 -3.28 10.11 22.36 0.23 -3.05 16
27 C 0.08 2.05 11.18 84.67 0.95 3.00 16
28 N -0.50 -17.18 10.27 -183.88 -1.89 -19.07 16
29 H 0.12 1.57 8.14 -2.39 -0.02 1.56 16
30 H 0.07 0.93 7.70 -2.39 -0.02 0.92 16
31 H 0.08 0.88 7.72 -2.39 -0.02 0.86 16
32 H 0.21 3.03 6.46 -2.91 -0.02 3.01 16
33 H 0.23 4.81 8.06 -2.91 -0.02 4.78 16
34 H 0.43 17.68 5.88 -92.71 -0.55 17.14 16
35 H 0.03 1.35 5.42 -2.39 -0.01 1.34 16
36 H 0.05 2.16 7.50 -2.39 -0.02 2.15 16
37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16
38 H 0.09 3.56 8.07 -2.39 -0.02 3.54 16
39 H 0.09 3.58 7.32 -2.39 -0.02 3.56 16
40 H 0.13 4.13 8.01 -2.91 -0.02 4.11 16
41 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16
42 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16
43 H 0.18 3.36 8.06 -2.91 -0.02 3.33 16
Total: -1.00 -77.04 371.02 2.63 -74.41
By element:
Atomic # 1 Polarization: 35.46 SS G_CDS: 0.47 Total: 35.92 kcal
Atomic # 6 Polarization: 40.34 SS G_CDS: 10.27 Total: 50.61 kcal
Atomic # 7 Polarization: -158.95 SS G_CDS: -9.02 Total: -167.96 kcal
Atomic # 8 Polarization: -35.11 SS G_CDS: -0.98 Total: -36.09 kcal
Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.10 kcal
Total: -77.04 2.63 -74.41 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001413582730.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.093 kcal
(2) G-P(sol) polarization free energy of solvation -77.037 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.056 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.409 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.684 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds