Wall clock time and date at job start Sat Apr 11 2020 06:52:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 N 1.30018 * 127.33556 * 2 1
4 4 O 1.20651 * 112.30508 * 179.97438 * 3 2 1
5 5 C 1.33498 * 113.15811 * 359.72359 * 4 3 2
6 6 C 1.50695 * 126.83165 * 180.30055 * 5 4 3
7 7 F 1.39898 * 109.47106 * 30.17690 * 6 5 4
8 8 F 1.39904 * 109.47164 * 150.16838 * 6 5 4
9 9 C 1.37363 * 106.33682 * 0.44494 * 5 4 3
10 10 C 1.47399 * 128.56113 * 179.85459 * 9 5 4
11 11 O 1.21612 * 120.00229 * 269.67443 * 10 9 5
12 12 N 1.34770 * 120.00130 * 89.68125 * 10 9 5
13 13 C 1.46500 * 120.00515 * 179.97438 * 12 10 9
14 14 H 1.09006 * 108.44209 * 327.30816 * 13 12 10
15 15 C 1.52559 * 108.51663 * 209.76626 * 13 12 10
16 16 C 1.50877 * 109.36322 * 153.72921 * 15 13 12
17 17 C 1.54298 * 110.23099 * 91.79644 * 16 15 13
18 18 N 1.47605 * 111.94829 * 319.70590 * 17 16 15
19 19 C 1.36936 * 118.64701 * 137.77701 * 18 17 16
20 20 H 1.08000 * 119.99519 * 206.85899 * 19 18 17
21 21 C 1.38809 * 119.99465 * 26.58475 * 19 18 17
22 22 N 1.31615 * 120.00472 * 17.20093 * 21 19 18
23 23 Si 1.86804 * 119.99424 * 197.19993 * 21 19 18
24 24 H 1.48500 * 109.47050 * 94.33300 * 23 21 19
25 25 H 1.48497 * 109.46931 * 214.33216 * 23 21 19
26 26 H 1.48495 * 109.47333 * 334.33374 * 23 21 19
27 27 C 1.44577 * 122.70563 * 317.49522 * 18 17 16
28 28 C 1.47090 * 108.51290 * 84.99634 * 13 12 10
29 29 H 1.09002 * 109.46913 * 270.03790 * 1 2 3
30 30 H 1.08993 * 109.47428 * 30.04267 * 1 2 3
31 31 H 1.09002 * 109.46775 * 150.04535 * 1 2 3
32 32 H 1.08997 * 109.47718 * 270.16978 * 6 5 4
33 33 H 0.97006 * 119.99814 * 359.97438 * 12 10 9
34 34 H 1.09001 * 109.49101 * 273.69741 * 15 13 12
35 35 H 1.09001 * 109.49103 * 33.76388 * 15 13 12
36 36 H 1.08999 * 109.37380 * 212.07492 * 16 15 13
37 37 H 1.08999 * 109.36633 * 331.82549 * 16 15 13
38 38 H 1.09004 * 109.14101 * 199.01247 * 17 16 15
39 39 H 1.09006 * 108.96191 * 80.27170 * 17 16 15
40 40 H 0.97004 * 119.99838 * 179.97438 * 22 21 19
41 41 H 1.09005 * 109.45158 * 211.02255 * 27 18 17
42 42 H 1.08998 * 109.45481 * 330.97549 * 27 18 17
43 43 H 1.09001 * 109.32723 * 63.79557 * 28 13 12
44 44 H 1.09002 * 109.33023 * 304.32067 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2955 1.0338 0.0000
4 8 3.4607 0.7209 0.0005
5 6 3.6494 -0.6007 0.0068
6 6 4.9712 -1.3244 0.0156
7 9 5.9250 -0.5455 0.6794
8 9 4.8279 -2.5493 0.6762
9 6 2.3992 -1.1696 0.0005
10 6 2.0402 -2.5992 0.0006
11 8 1.8923 -3.1891 -1.0525
12 7 1.8757 -3.2526 1.1678
13 6 1.5184 -4.6733 1.1680
14 1 0.8927 -4.8717 0.2977
15 6 0.7035 -4.9678 2.4238
16 6 -0.1940 -6.1539 2.1710
17 6 0.5145 -7.4584 2.5917
18 7 1.9426 -7.4558 2.2184
19 6 2.8571 -7.9356 3.1176
20 1 3.8753 -7.5761 3.0962
21 6 2.4739 -8.8797 4.0603
22 7 1.3604 -9.5614 3.8941
23 14 3.5389 -9.1827 5.5648
24 1 3.0471 -8.3537 6.6945
25 1 3.4712 -10.6184 5.9382
26 1 4.9450 -8.8169 5.2579
27 6 2.4149 -6.9730 0.9401
28 6 2.7520 -5.4652 1.0467
29 1 -0.3633 0.0007 1.0277
30 1 -0.3634 0.8895 -0.5144
31 1 -0.3633 -0.8904 -0.5131
32 1 5.2958 -1.5006 -1.0099
33 1 1.9939 -2.7821 2.0079
34 1 1.3777 -5.1915 3.2506
35 1 0.0955 -4.0987 2.6749
36 1 -1.1134 -6.0405 2.7453
37 1 -0.4350 -6.2050 1.1092
38 1 0.0239 -8.3035 2.1086
39 1 0.4315 -7.5738 3.6725
40 1 1.0929 -10.2215 4.5527
41 1 3.3093 -7.5253 0.6515
42 1 1.6397 -7.1189 0.1879
43 1 3.3768 -5.2962 1.9236
44 1 3.2948 -5.1529 0.1545
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001052481398.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:59
Heat of formation + Delta-G solvation = -68.279898 kcal
Electronic energy + Delta-G solvation = -31345.095088 eV
Core-core repulsion = 26743.680897 eV
Total energy + Delta-G solvation = -4601.414191 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.149 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-50.30026 -48.32892 -46.21540 -41.20744 -39.21344 -36.43424 -35.86196 -34.38408
-33.92957 -33.28367 -31.70553 -29.90996 -28.35654 -27.76096 -26.16303 -25.50157
-24.57124 -22.21529 -21.64564 -21.58032 -20.95974 -19.50543 -19.46719 -18.57626
-18.40199 -18.29849 -18.27103 -17.42620 -16.97515 -16.77926 -15.95493 -15.67282
-15.49452 -15.24675 -15.18806 -15.06144 -14.63398 -14.61113 -14.37537 -14.34263
-14.18839 -14.03444 -13.82735 -13.58198 -13.19190 -12.99498 -12.74840 -12.71811
-12.58223 -12.40902 -12.19849 -12.03836 -11.73818 -11.59399 -11.50447 -11.32004
-11.26644 -11.14916 -11.01319 -10.42853 -10.20179 -8.62599 -7.82522 -5.28128
-0.26316 0.60448 1.07289 1.20791 1.47808 1.50026 1.58254 1.96245
2.46772 2.54403 2.84505 2.90384 3.28344 3.31717 3.41858 3.59374
3.68633 3.76359 3.85724 3.88992 4.12655 4.31017 4.32474 4.46807
4.47806 4.54996 4.62652 4.68902 4.79261 4.94258 5.00818 5.02115
5.14317 5.18243 5.25554 5.32874 5.46914 5.52379 5.61278 5.72290
5.84358 6.35588 6.44811 6.82384 6.98057 7.22518 7.98601 8.37563
9.22425
Molecular weight = 343.15amu
Principal moments of inertia in cm(-1)
A = 0.015421 B = 0.003171 C = 0.002843
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1815.307953 B = 8827.168843 C = 9845.964594
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 C 0.061 3.939
3 N -0.355 5.355
4 O 0.122 5.878
5 C -0.063 4.063
6 C 0.361 3.639
7 F -0.186 7.186
8 F -0.186 7.186
9 C -0.213 4.213
10 C 0.600 3.400
11 O -0.556 6.556
12 N -0.695 5.695
13 C 0.170 3.830
14 H 0.071 0.929
15 C -0.102 4.102
16 C -0.128 4.128
17 C 0.186 3.814
18 N -0.601 5.601
19 C -0.261 4.261
20 H 0.063 0.937
21 C -0.044 4.044
22 N -0.933 5.933
23 Si 0.958 3.042
24 H -0.286 1.286
25 H -0.298 1.298
26 H -0.271 1.271
27 C 0.159 3.841
28 C -0.135 4.135
29 H 0.107 0.893
30 H 0.099 0.901
31 H 0.087 0.913
32 H 0.190 0.810
33 H 0.410 0.590
34 H 0.060 0.940
35 H 0.086 0.914
36 H 0.078 0.922
37 H 0.057 0.943
38 H -0.007 1.007
39 H 0.042 0.958
40 H 0.248 0.752
41 H 0.038 0.962
42 H 0.039 0.961
43 H 0.053 0.947
44 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.746 21.518 -7.438 22.779
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.101 4.101
3 N -0.059 5.059
4 O 0.058 5.942
5 C -0.128 4.128
6 C 0.307 3.693
7 F -0.167 7.167
8 F -0.167 7.167
9 C -0.221 4.221
10 C 0.384 3.616
11 O -0.435 6.435
12 N -0.345 5.345
13 C 0.067 3.933
14 H 0.089 0.911
15 C -0.140 4.140
16 C -0.167 4.167
17 C 0.061 3.939
18 N -0.323 5.323
19 C -0.392 4.392
20 H 0.081 0.919
21 C -0.240 4.240
22 N -0.580 5.580
23 Si 0.787 3.213
24 H -0.213 1.213
25 H -0.225 1.225
26 H -0.196 1.196
27 C 0.032 3.968
28 C -0.176 4.176
29 H 0.126 0.874
30 H 0.118 0.882
31 H 0.106 0.894
32 H 0.206 0.794
33 H 0.246 0.754
34 H 0.078 0.922
35 H 0.104 0.896
36 H 0.096 0.904
37 H 0.076 0.924
38 H 0.011 0.989
39 H 0.060 0.940
40 H 0.057 0.943
41 H 0.056 0.944
42 H 0.057 0.943
43 H 0.072 0.928
44 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 0.373 22.263 -8.063 23.681
hybrid contribution 0.578 -1.294 1.365 1.968
sum 0.951 20.969 -6.698 22.033
Atomic orbital electron populations
1.20460 0.82507 1.05350 1.05564 1.25291 1.00093 0.85048 0.99653
1.73631 0.89153 1.23459 1.19670 1.84602 1.21598 1.20793 1.67230
1.25402 0.97505 0.85632 1.04273 1.20069 0.79041 0.73945 0.96288
1.93081 1.64767 1.75029 1.83782 1.93137 1.95650 1.43828 1.84050
1.22068 0.92753 0.95677 1.11570 1.16879 0.76731 0.83764 0.84236
1.90843 1.51928 1.68444 1.32263 1.46221 1.68659 1.11529 1.08067
1.19871 0.96027 0.78141 0.99289 0.91099 1.21136 0.98059 0.98210
0.96611 1.21870 0.98530 0.95147 1.01186 1.20878 0.82390 0.92426
0.98186 1.43862 1.03127 1.71985 1.13320 1.19467 0.93448 1.16477
1.09800 0.91919 1.25674 0.98984 0.96324 1.03013 1.70229 1.26408
1.25661 1.35653 0.85386 0.79052 0.76312 0.80505 1.21257 1.22507
1.19575 1.20663 0.97141 0.91970 0.87076 1.21598 0.97450 0.97602
1.00931 0.87445 0.88220 0.89380 0.79350 0.75365 0.92150 0.89585
0.90355 0.92433 0.98908 0.93970 0.94272 0.94400 0.94290 0.92818
0.92417
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.06 10.49 71.23 0.75 -0.31 16
2 C 0.06 1.17 7.59 45.15 0.34 1.51 16
3 N -0.35 -7.40 12.01 -44.78 -0.54 -7.94 16
4 O 0.12 2.41 11.06 76.95 0.85 3.26 16
5 C -0.06 -1.18 7.13 25.48 0.18 -1.00 16
6 C 0.36 5.57 5.81 71.23 0.41 5.98 16
7 F -0.19 -3.16 17.32 44.97 0.78 -2.38 16
8 F -0.19 -3.99 16.11 44.97 0.72 -3.27 16
9 C -0.21 -4.57 6.19 -18.74 -0.12 -4.69 16
10 C 0.60 15.42 6.43 86.66 0.56 15.98 16
11 O -0.56 -18.24 16.61 -4.07 -0.07 -18.31 16
12 N -0.70 -16.82 4.88 -455.38 -2.22 -19.04 16
13 C 0.17 5.02 1.95 43.01 0.08 5.10 16
14 H 0.07 2.27 6.65 -2.38 -0.02 2.25 16
15 C -0.10 -3.01 5.00 29.76 0.15 -2.86 16
16 C -0.13 -4.29 5.71 30.34 0.17 -4.12 16
17 C 0.19 8.55 4.71 86.61 0.41 8.96 16
18 N -0.60 -28.74 2.26 -697.65 -1.58 -30.32 16
19 C -0.26 -13.91 9.43 84.03 0.79 -13.12 16
20 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16
21 C -0.04 -2.42 4.82 84.86 0.41 -2.01 16
22 N -0.93 -54.08 11.12 21.65 0.24 -53.84 16
23 Si 0.96 44.18 29.59 68.60 2.03 46.21 16
24 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16
25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16
26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16
27 C 0.16 6.54 5.65 87.38 0.49 7.03 16
28 C -0.13 -4.62 5.20 29.40 0.15 -4.47 16
29 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16
30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16
31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.19 1.41 8.14 -2.39 -0.02 1.39 16
33 H 0.41 8.23 8.60 -92.70 -0.80 7.44 16
34 H 0.06 2.11 7.49 -2.39 -0.02 2.09 16
35 H 0.09 1.97 8.05 -2.39 -0.02 1.95 16
36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16
37 H 0.06 1.84 7.31 -2.39 -0.02 1.83 16
38 H -0.01 -0.37 8.03 -2.38 -0.02 -0.39 16
39 H 0.04 2.18 6.39 -2.38 -0.02 2.16 16
40 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16
41 H 0.04 1.61 7.99 -2.38 -0.02 1.60 16
42 H 0.04 1.55 8.06 -2.39 -0.02 1.53 16
43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16
44 H 0.06 1.94 7.95 -2.39 -0.02 1.93 16
Total: -1.00 -67.94 369.96 5.26 -62.67
By element:
Atomic # 1 Polarization: 10.71 SS G_CDS: 0.25 Total: 10.96 kcal
Atomic # 6 Polarization: 7.19 SS G_CDS: 4.79 Total: 11.98 kcal
Atomic # 7 Polarization: -107.04 SS G_CDS: -4.10 Total: -111.14 kcal
Atomic # 8 Polarization: -15.83 SS G_CDS: 0.78 Total: -15.04 kcal
Atomic # 9 Polarization: -7.15 SS G_CDS: 1.50 Total: -5.64 kcal
Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal
Total: -67.94 5.26 -62.67 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052481398.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.606 kcal
(2) G-P(sol) polarization free energy of solvation -67.936 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.542 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.262 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.280 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds