Wall clock time and date at job start Sat Apr 11 2020 06:52:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47174 * 2 1
4 4 C 1.50706 * 109.47209 * 240.00210 * 2 1 3
5 5 H 1.08003 * 119.99893 * 240.00215 * 4 2 1
6 6 C 1.37872 * 119.99856 * 59.99766 * 4 2 1
7 7 N 1.31522 * 120.00145 * 0.02562 * 6 4 2
8 8 Si 1.86798 * 120.00001 * 179.97438 * 6 4 2
9 9 H 1.48493 * 109.47252 * 0.02562 * 8 6 4
10 10 H 1.48508 * 109.46927 * 120.00254 * 8 6 4
11 11 H 1.48493 * 109.47501 * 239.99956 * 8 6 4
12 12 C 1.52996 * 109.47208 * 120.00313 * 2 1 3
13 13 S 1.81395 * 109.47102 * 299.99999 * 12 2 1
14 14 O 1.42097 * 110.54712 * 68.37667 * 13 12 2
15 15 O 1.42107 * 110.54646 * 291.62184 * 13 12 2
16 16 N 1.65604 * 104.45284 * 179.97438 * 13 12 2
17 17 C 1.47082 * 120.87828 * 89.99818 * 16 13 12
18 18 C 1.53239 * 108.52172 * 128.79798 * 17 16 13
19 19 N 1.46898 * 109.36131 * 53.81212 * 18 17 16
20 20 C 1.39611 * 111.00118 * 172.75762 * 19 18 17
21 21 N 1.33650 * 125.60907 * 359.69939 * 20 19 18
22 22 C 1.30882 * 109.77174 * 179.87456 * 21 20 19
23 23 N 1.34343 * 108.21071 * 0.37758 * 22 21 20
24 24 H 0.96997 * 126.76048 * 179.74744 * 23 22 21
25 25 N 1.31204 * 125.61200 * 179.97438 * 20 19 18
26 26 C 1.46895 * 111.27371 * 296.94136 * 19 18 17
27 27 C 1.47079 * 120.88389 * 269.98001 * 16 13 12
28 28 H 1.08999 * 109.47254 * 299.99529 * 1 2 3
29 29 H 1.08997 * 109.47497 * 59.99913 * 1 2 3
30 30 H 1.09005 * 109.46900 * 179.97438 * 1 2 3
31 31 H 1.09005 * 109.47255 * 179.97438 * 3 2 1
32 32 H 1.08992 * 109.47314 * 300.00127 * 3 2 1
33 33 H 1.08999 * 109.46646 * 60.00098 * 3 2 1
34 34 H 0.97003 * 120.00236 * 180.02562 * 7 6 4
35 35 H 1.09005 * 109.47250 * 180.02562 * 12 2 1
36 36 H 1.08997 * 109.47232 * 59.99792 * 12 2 1
37 37 H 1.08992 * 109.63065 * 9.08509 * 17 16 13
38 38 H 1.09000 * 109.63024 * 248.50707 * 17 16 13
39 39 H 1.09002 * 109.49492 * 173.78903 * 18 17 16
40 40 H 1.08996 * 109.49220 * 293.84473 * 18 17 16
41 41 H 1.07995 * 125.89825 * 180.14875 * 22 21 20
42 42 H 1.08998 * 109.46755 * 303.10295 * 26 19 18
43 43 H 1.09001 * 109.51714 * 183.05033 * 26 19 18
44 44 H 1.08996 * 109.62593 * 350.91325 * 27 16 13
45 45 H 1.09002 * 109.62531 * 111.49129 * 27 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.6533 -1.5885 -1.1314
6 6 1.6992 -0.2393 -2.4827
7 7 0.9435 0.8303 -2.6034
8 14 2.3225 -1.1194 -4.0080
9 1 3.1474 -2.2861 -3.6039
10 1 1.1677 -1.5864 -4.8166
11 1 3.1472 -0.1856 -4.8161
12 6 2.0400 -0.7213 1.2492
13 16 1.4354 0.1337 2.7303
14 8 0.0280 -0.0185 2.8544
15 8 2.0480 1.4099 2.8545
16 7 2.0530 -0.7410 3.9936
17 6 3.3655 -0.4113 4.5697
18 6 3.2111 -0.2791 6.0886
19 7 2.5865 -1.4968 6.6224
20 6 2.5774 -1.4838 8.0184
21 7 3.0695 -0.5103 8.7907
22 6 2.8954 -0.8149 10.0517
23 7 2.2867 -2.0109 10.1146
24 1 2.0338 -2.4920 10.9179
25 7 2.0889 -2.4274 8.7881
26 6 1.2302 -1.6783 6.0882
27 6 1.3035 -1.8679 4.5694
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0277 -0.0005
31 1 3.1301 1.4425 0.0005
32 1 1.6767 1.9563 -0.8899
33 1 1.6766 1.9562 0.8900
34 1 0.7088 1.1615 -3.4844
35 1 3.1301 -0.7209 1.2494
36 1 1.6767 -1.7489 1.2491
37 1 3.7213 0.5315 4.1544
38 1 4.0756 -1.2062 4.3417
39 1 4.1923 -0.1441 6.5436
40 1 2.5827 0.5818 6.3167
41 1 3.1933 -0.2110 10.8959
42 1 0.6291 -0.7981 6.3163
43 1 0.7744 -2.5578 6.5429
44 1 0.2960 -1.8880 4.1539
45 1 1.8154 -2.8028 4.3413
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001364953709.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:32
Heat of formation + Delta-G solvation = 44.053036 kcal
Electronic energy + Delta-G solvation = -29033.902628 eV
Core-core repulsion = 25023.492696 eV
Total energy + Delta-G solvation = -4010.409932 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.146 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-42.41366 -39.04330 -36.62701 -36.26346 -35.35631 -34.86732 -32.44023 -31.64967
-31.37024 -30.82995 -26.95912 -26.23565 -25.70893 -25.21810 -24.32793 -22.66004
-21.71478 -20.45045 -19.44294 -18.87826 -18.23479 -17.51525 -16.24402 -16.07274
-15.89733 -15.77192 -15.45547 -15.40743 -14.72759 -14.65314 -14.61246 -14.36916
-13.72339 -13.16983 -12.99583 -12.57742 -12.50279 -12.39570 -12.28310 -12.08594
-11.75829 -11.42706 -11.24434 -11.19445 -11.05354 -10.95721 -10.87259 -10.86706
-10.68249 -10.34762 -10.34336 -10.27369 -10.25515 -10.09210 -9.64483 -9.58099
-9.03299 -8.69538 -8.55624 -8.39679 -6.02697 -4.14536 0.81221 1.29547
2.20929 2.54657 3.03207 3.25812 3.28866 3.34325 3.37163 4.07616
4.33850 4.41153 4.52957 4.57887 4.58654 4.93406 5.07784 5.09138
5.20146 5.22257 5.24738 5.39232 5.55907 5.63534 5.71481 5.76826
5.77595 5.89815 5.93239 6.11949 6.36176 6.39634 6.63017 6.71560
6.71760 6.80526 6.88975 6.91390 7.04915 7.32346 7.51120 7.68964
7.80219 7.98896 8.10639 8.33891 8.84359 9.50965 10.98625
Molecular weight = 343.15amu
Principal moments of inertia in cm(-1)
A = 0.031665 B = 0.002558 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 884.047979 B =10945.053030 C =11048.386723
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.081 3.919
3 C -0.164 4.164
4 C -0.500 4.500
5 H 0.059 0.941
6 C 0.064 3.936
7 N -0.884 5.884
8 Si 0.896 3.104
9 H -0.274 1.274
10 H -0.284 1.284
11 H -0.284 1.284
12 C -0.580 4.580
13 S 2.591 3.409
14 O -0.962 6.962
15 O -0.960 6.960
16 N -1.014 6.014
17 C 0.120 3.880
18 C 0.058 3.942
19 N -0.439 5.439
20 C 0.405 3.595
21 N -0.563 5.563
22 C 0.276 3.724
23 N -0.484 5.484
24 H 0.442 0.558
25 N -0.326 5.326
26 C 0.053 3.947
27 C 0.123 3.877
28 H 0.027 0.973
29 H 0.095 0.905
30 H 0.036 0.964
31 H 0.036 0.964
32 H 0.095 0.905
33 H 0.027 0.973
34 H 0.262 0.738
35 H 0.118 0.882
36 H 0.118 0.882
37 H 0.106 0.894
38 H 0.077 0.923
39 H 0.099 0.901
40 H 0.057 0.943
41 H 0.223 0.777
42 H 0.052 0.948
43 H 0.097 0.903
44 H 0.106 0.894
45 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.696 -4.885 23.865 24.639
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.079 3.921
3 C -0.221 4.221
4 C -0.540 4.540
5 H 0.078 0.922
6 C -0.138 4.138
7 N -0.522 5.522
8 Si 0.724 3.276
9 H -0.198 1.198
10 H -0.210 1.210
11 H -0.210 1.210
12 C -0.713 4.713
13 S 2.691 3.309
14 O -0.952 6.952
15 O -0.951 6.951
16 N -0.850 5.850
17 C -0.006 4.006
18 C -0.071 4.071
19 N -0.163 5.163
20 C 0.035 3.965
21 N -0.295 5.295
22 C -0.024 4.024
23 N -0.203 5.203
24 H 0.288 0.712
25 N -0.160 5.160
26 C -0.075 4.075
27 C -0.003 4.003
28 H 0.046 0.954
29 H 0.113 0.887
30 H 0.055 0.945
31 H 0.056 0.944
32 H 0.113 0.887
33 H 0.046 0.954
34 H 0.072 0.928
35 H 0.137 0.863
36 H 0.136 0.864
37 H 0.124 0.876
38 H 0.095 0.905
39 H 0.117 0.883
40 H 0.075 0.925
41 H 0.240 0.760
42 H 0.070 0.930
43 H 0.116 0.884
44 H 0.124 0.876
45 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 3.185 -4.710 23.197 23.884
hybrid contribution 0.326 -0.667 -0.050 0.744
sum 3.511 -5.377 23.147 24.021
Atomic orbital electron populations
1.22275 0.96930 1.00625 1.02308 1.17944 0.92818 0.92221 0.89135
1.22275 0.99732 0.97816 1.02314 1.20985 1.31575 1.12037 0.89362
0.92238 1.24946 0.94919 0.94994 0.98955 1.69816 1.36421 1.22617
1.23359 0.86479 0.78633 0.79624 0.82906 1.19828 1.20972 1.20960
1.30558 1.11320 1.12788 1.16677 1.05780 0.74655 0.75061 0.75382
1.93523 1.29462 1.86540 1.85695 1.93530 1.78111 1.37762 1.85670
1.58148 1.29197 1.47117 1.50533 1.21589 0.84444 1.02667 0.91865
1.22431 1.00858 0.88796 0.94968 1.58940 1.20964 1.38513 0.97897
1.22359 0.94515 0.88113 0.91526 1.70544 1.28646 1.29229 1.01117
1.25957 0.92818 0.87057 0.96612 1.47943 1.47443 1.17243 1.07675
0.71194 1.78177 1.29184 1.21758 0.86926 1.22597 0.86193 1.02633
0.96123 1.21525 0.97861 0.89557 0.91364 0.95385 0.88671 0.94463
0.94445 0.88665 0.95382 0.92811 0.86343 0.86365 0.87558 0.90479
0.88301 0.92468 0.76045 0.93007 0.88425 0.87575 0.90265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.02 7.77 37.16 0.29 -3.73 16
2 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16
3 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16
4 C -0.50 -13.11 8.01 -34.44 -0.28 -13.39 16
5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16
6 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16
7 N -0.88 -24.15 9.35 55.43 0.52 -23.63 16
8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16
9 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16
10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
12 C -0.58 -11.23 5.12 37.16 0.19 -11.04 16
13 S 2.59 47.77 4.50 -107.50 -0.48 47.29 16
14 O -0.96 -19.79 14.22 -57.54 -0.82 -20.61 16
15 O -0.96 -19.78 14.23 -57.54 -0.82 -20.60 16
16 N -1.01 -14.49 3.26 -113.24 -0.37 -14.86 16
17 C 0.12 1.49 6.62 -3.60 -0.02 1.47 16
18 C 0.06 0.71 5.05 -3.70 -0.02 0.69 16
19 N -0.44 -5.49 4.71 -174.73 -0.82 -6.32 16
20 C 0.41 5.03 7.38 -321.17 -2.37 2.66 16
21 N -0.56 -6.22 10.16 -14.98 -0.15 -6.38 16
22 C 0.28 1.79 13.12 -90.69 -1.19 0.61 16
23 N -0.48 -3.27 7.43 29.52 0.22 -3.05 16
24 H 0.44 1.20 8.96 -182.35 -1.63 -0.44 16
25 N -0.33 -3.74 12.47 29.99 0.37 -3.36 16
26 C 0.05 0.64 5.55 -3.71 -0.02 0.62 16
27 C 0.12 1.52 6.62 -3.61 -0.02 1.49 16
28 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16
29 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16
30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16
31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16
32 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16
33 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16
34 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16
35 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16
36 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16
37 H 0.11 1.33 6.87 -51.93 -0.36 0.98 16
38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
39 H 0.10 1.10 7.85 -51.93 -0.41 0.70 16
40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
41 H 0.22 0.24 8.06 -52.49 -0.42 -0.18 16
42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
43 H 0.10 1.06 7.83 -51.93 -0.41 0.66 16
44 H 0.11 1.32 6.87 -51.93 -0.36 0.96 16
45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
LS Contribution 360.57 15.07 5.43 5.43
Total: -1.00 -35.40 360.57 -12.97 -48.37
By element:
Atomic # 1 Polarization: 10.64 SS G_CDS: -7.71 Total: 2.94 kcal
Atomic # 6 Polarization: -17.55 SS G_CDS: -3.33 Total: -20.88 kcal
Atomic # 7 Polarization: -57.35 SS G_CDS: -0.23 Total: -57.59 kcal
Atomic # 8 Polarization: -39.58 SS G_CDS: -1.64 Total: -41.21 kcal
Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal
Atomic # 16 Polarization: 47.77 SS G_CDS: -0.48 Total: 47.29 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -35.40 -12.97 -48.37 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364953709.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.422 kcal
(2) G-P(sol) polarization free energy of solvation -35.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.026 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.973 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.369 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds