Wall clock time and date at job start Sat Apr 11 2020 06:52:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47174 * 2 1
4 4 C 1.50706 * 109.47209 * 240.00210 * 2 1 3
5 5 H 1.08003 * 119.99893 * 240.00215 * 4 2 1
6 6 C 1.37872 * 119.99856 * 59.99766 * 4 2 1
7 7 N 1.31522 * 120.00145 * 0.02562 * 6 4 2
8 8 Si 1.86798 * 120.00001 * 179.97438 * 6 4 2
9 9 H 1.48493 * 109.47252 * 0.02562 * 8 6 4
10 10 H 1.48508 * 109.46927 * 120.00254 * 8 6 4
11 11 H 1.48493 * 109.47501 * 239.99956 * 8 6 4
12 12 C 1.52996 * 109.47208 * 120.00313 * 2 1 3
13 13 S 1.81395 * 109.47102 * 299.99999 * 12 2 1
14 14 O 1.42097 * 110.54712 * 68.37667 * 13 12 2
15 15 O 1.42107 * 110.54646 * 291.62184 * 13 12 2
16 16 N 1.65604 * 104.45284 * 179.97438 * 13 12 2
17 17 C 1.47082 * 120.87828 * 89.99818 * 16 13 12
18 18 C 1.53239 * 108.52172 * 128.79798 * 17 16 13
19 19 N 1.46898 * 109.36131 * 53.81212 * 18 17 16
20 20 C 1.39611 * 111.00118 * 172.75762 * 19 18 17
21 21 N 1.33650 * 125.60907 * 359.69939 * 20 19 18
22 22 C 1.30882 * 109.77174 * 179.87456 * 21 20 19
23 23 N 1.34343 * 108.21071 * 0.37758 * 22 21 20
24 24 H 0.96997 * 126.76048 * 179.74744 * 23 22 21
25 25 N 1.31204 * 125.61200 * 179.97438 * 20 19 18
26 26 C 1.46895 * 111.27371 * 296.94136 * 19 18 17
27 27 C 1.47079 * 120.88389 * 269.98001 * 16 13 12
28 28 H 1.08999 * 109.47254 * 299.99529 * 1 2 3
29 29 H 1.08997 * 109.47497 * 59.99913 * 1 2 3
30 30 H 1.09005 * 109.46900 * 179.97438 * 1 2 3
31 31 H 1.09005 * 109.47255 * 179.97438 * 3 2 1
32 32 H 1.08992 * 109.47314 * 300.00127 * 3 2 1
33 33 H 1.08999 * 109.46646 * 60.00098 * 3 2 1
34 34 H 0.97003 * 120.00236 * 180.02562 * 7 6 4
35 35 H 1.09005 * 109.47250 * 180.02562 * 12 2 1
36 36 H 1.08997 * 109.47232 * 59.99792 * 12 2 1
37 37 H 1.08992 * 109.63065 * 9.08509 * 17 16 13
38 38 H 1.09000 * 109.63024 * 248.50707 * 17 16 13
39 39 H 1.09002 * 109.49492 * 173.78903 * 18 17 16
40 40 H 1.08996 * 109.49220 * 293.84473 * 18 17 16
41 41 H 1.07995 * 125.89825 * 180.14875 * 22 21 20
42 42 H 1.08998 * 109.46755 * 303.10295 * 26 19 18
43 43 H 1.09001 * 109.51714 * 183.05033 * 26 19 18
44 44 H 1.08996 * 109.62593 * 350.91325 * 27 16 13
45 45 H 1.09002 * 109.62531 * 111.49129 * 27 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.6533 -1.5885 -1.1314
6 6 1.6992 -0.2393 -2.4827
7 7 0.9435 0.8303 -2.6034
8 14 2.3225 -1.1194 -4.0080
9 1 3.1474 -2.2861 -3.6039
10 1 1.1677 -1.5864 -4.8166
11 1 3.1472 -0.1856 -4.8161
12 6 2.0400 -0.7213 1.2492
13 16 1.4354 0.1337 2.7303
14 8 0.0280 -0.0185 2.8544
15 8 2.0480 1.4099 2.8545
16 7 2.0530 -0.7410 3.9936
17 6 3.3655 -0.4113 4.5697
18 6 3.2111 -0.2791 6.0886
19 7 2.5865 -1.4968 6.6224
20 6 2.5774 -1.4838 8.0184
21 7 3.0695 -0.5103 8.7907
22 6 2.8954 -0.8149 10.0517
23 7 2.2867 -2.0109 10.1146
24 1 2.0338 -2.4920 10.9179
25 7 2.0889 -2.4274 8.7881
26 6 1.2302 -1.6783 6.0882
27 6 1.3035 -1.8679 4.5694
28 1 -0.3634 0.5138 0.8900
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0277 -0.0005
31 1 3.1301 1.4425 0.0005
32 1 1.6767 1.9563 -0.8899
33 1 1.6766 1.9562 0.8900
34 1 0.7088 1.1615 -3.4844
35 1 3.1301 -0.7209 1.2494
36 1 1.6767 -1.7489 1.2491
37 1 3.7213 0.5315 4.1544
38 1 4.0756 -1.2062 4.3417
39 1 4.1923 -0.1441 6.5436
40 1 2.5827 0.5818 6.3167
41 1 3.1933 -0.2110 10.8959
42 1 0.6291 -0.7981 6.3163
43 1 0.7744 -2.5578 6.5429
44 1 0.2960 -1.8880 4.1539
45 1 1.8154 -2.8028 4.3413
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001364953709.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:31
Heat of formation + Delta-G solvation = 20.195598 kcal
Electronic energy + Delta-G solvation = -29034.937164 eV
Core-core repulsion = 25023.492696 eV
Total energy + Delta-G solvation = -4011.444468 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 343.146 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.09397 -39.98440 -38.17823 -38.10752 -36.89712 -35.87583 -33.61217 -33.16730
-32.27769 -31.61534 -28.43823 -27.67551 -27.42533 -27.22939 -25.21780 -23.34411
-22.63128 -21.43925 -21.23343 -19.74444 -19.31097 -18.81903 -17.91172 -17.24924
-17.02796 -16.93341 -16.70988 -16.57077 -16.22444 -15.76125 -15.63806 -15.26760
-15.01090 -14.65352 -14.60874 -14.40822 -13.87725 -13.76876 -13.49595 -13.09535
-13.02663 -13.00364 -12.90111 -12.74385 -12.53294 -12.40300 -12.36341 -12.17489
-12.11518 -12.00314 -11.93441 -11.64832 -11.54903 -11.32822 -11.05996 -10.99453
-10.62238 -10.40869 -10.04490 -9.50115 -8.01847 -6.20255 -0.65031 0.66199
1.43812 1.47015 1.55799 1.56602 1.79204 1.88302 2.45355 2.56895
2.91904 3.19100 3.23148 3.42772 3.56011 3.90467 3.96486 4.05273
4.15872 4.18638 4.23780 4.31600 4.38795 4.51299 4.62029 4.68412
4.76416 4.84007 4.88616 4.89060 4.98159 5.02424 5.09416 5.12993
5.19536 5.40684 5.46008 5.52975 5.60944 5.66471 5.99182 6.01262
6.13338 6.33079 6.35765 6.84922 7.12444 7.48067 8.98133
Molecular weight = 343.15amu
Principal moments of inertia in cm(-1)
A = 0.031665 B = 0.002558 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 884.047979 B =10945.053030 C =11048.386723
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.068 3.932
3 C -0.160 4.160
4 C -0.514 4.514
5 H 0.063 0.937
6 C 0.016 3.984
7 N -0.909 5.909
8 Si 0.954 3.046
9 H -0.265 1.265
10 H -0.284 1.284
11 H -0.284 1.284
12 C -0.583 4.583
13 S 2.610 3.390
14 O -0.987 6.987
15 O -0.985 6.985
16 N -1.006 6.006
17 C 0.116 3.884
18 C 0.066 3.934
19 N -0.444 5.444
20 C 0.386 3.614
21 N -0.601 5.601
22 C 0.293 3.707
23 N -0.471 5.471
24 H 0.460 0.540
25 N -0.355 5.355
26 C 0.058 3.942
27 C 0.118 3.882
28 H 0.032 0.968
29 H 0.070 0.930
30 H 0.041 0.959
31 H 0.041 0.959
32 H 0.070 0.930
33 H 0.032 0.968
34 H 0.261 0.739
35 H 0.137 0.863
36 H 0.137 0.863
37 H 0.103 0.897
38 H 0.102 0.898
39 H 0.109 0.891
40 H 0.039 0.961
41 H 0.276 0.724
42 H 0.035 0.965
43 H 0.108 0.892
44 H 0.104 0.896
45 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.977 -6.369 25.829 27.064
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.066 3.934
3 C -0.218 4.218
4 C -0.553 4.553
5 H 0.081 0.919
6 C -0.183 4.183
7 N -0.548 5.548
8 Si 0.780 3.220
9 H -0.189 1.189
10 H -0.210 1.210
11 H -0.210 1.210
12 C -0.716 4.716
13 S 2.709 3.291
14 O -0.977 6.977
15 O -0.976 6.976
16 N -0.845 5.845
17 C -0.009 4.009
18 C -0.063 4.063
19 N -0.167 5.167
20 C 0.015 3.985
21 N -0.335 5.335
22 C -0.006 4.006
23 N -0.192 5.192
24 H 0.310 0.690
25 N -0.190 5.190
26 C -0.070 4.070
27 C -0.007 4.007
28 H 0.051 0.949
29 H 0.088 0.912
30 H 0.060 0.940
31 H 0.060 0.940
32 H 0.089 0.911
33 H 0.051 0.949
34 H 0.070 0.930
35 H 0.155 0.845
36 H 0.155 0.845
37 H 0.121 0.879
38 H 0.120 0.880
39 H 0.127 0.873
40 H 0.057 0.943
41 H 0.291 0.709
42 H 0.054 0.946
43 H 0.127 0.873
44 H 0.122 0.878
45 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 4.461 -6.214 25.190 26.326
hybrid contribution -0.072 -0.209 -0.461 0.511
sum 4.389 -6.423 24.729 25.924
Atomic orbital electron populations
1.22206 0.97763 1.00532 1.01275 1.17934 0.92332 0.92149 0.90941
1.22206 0.99905 0.98385 1.01280 1.21326 1.31443 1.12195 0.90351
0.91857 1.25683 0.95241 0.95677 1.01693 1.69957 1.37321 1.23731
1.23749 0.85563 0.78023 0.78738 0.79642 1.18928 1.21019 1.20994
1.30490 1.12562 1.13333 1.15173 1.04938 0.73893 0.74676 0.75576
1.93484 1.31190 1.86880 1.86134 1.93490 1.78408 1.39545 1.86111
1.57798 1.30125 1.47388 1.49160 1.21817 0.83736 1.03508 0.91889
1.22333 1.00988 0.88290 0.94679 1.58924 1.20808 1.38331 0.98666
1.22437 0.95582 0.88899 0.91553 1.70520 1.30196 1.29878 1.02865
1.26921 0.90445 0.86628 0.96599 1.47864 1.46866 1.17514 1.06919
0.69050 1.78047 1.29763 1.22445 0.88777 1.22534 0.86282 1.02365
0.95858 1.21754 0.97904 0.89629 0.91406 0.94931 0.91153 0.94010
0.93982 0.91146 0.94929 0.92967 0.84481 0.84504 0.87853 0.88011
0.87318 0.94298 0.70915 0.94642 0.87349 0.87832 0.87819
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -7.94 7.77 71.98 0.56 -7.38 16
2 C 0.07 3.29 0.52 -52.93 -0.03 3.27 16
3 C -0.16 -7.94 7.78 71.98 0.56 -7.38 16
4 C -0.51 -26.68 8.01 25.60 0.21 -26.48 16
5 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16
6 C 0.02 0.86 5.15 84.65 0.44 1.30 16
7 N -0.91 -50.48 9.35 21.45 0.20 -50.28 16
8 Si 0.95 42.22 29.54 68.60 2.03 44.25 16
9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16
11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16
12 C -0.58 -21.82 5.12 71.98 0.37 -21.45 16
13 S 2.61 94.54 4.50 -56.49 -0.25 94.29 16
14 O -0.99 -40.44 14.22 -127.65 -1.82 -42.25 16
15 O -0.99 -40.42 14.23 -127.65 -1.82 -42.23 16
16 N -1.01 -27.44 3.26 -512.18 -1.67 -29.11 16
17 C 0.12 2.69 6.62 86.35 0.57 3.27 16
18 C 0.07 1.55 5.05 86.38 0.44 1.99 16
19 N -0.44 -10.58 4.71 -706.71 -3.33 -13.91 16
20 C 0.39 9.12 7.38 260.91 1.92 11.04 16
21 N -0.60 -12.28 10.16 -201.31 -2.04 -14.32 16
22 C 0.29 2.95 13.12 180.37 2.37 5.31 16
23 N -0.47 -5.19 7.43 -60.52 -0.45 -5.64 16
24 H 0.46 1.22 8.96 -213.11 -1.91 -0.69 16
25 N -0.36 -7.60 12.47 -59.03 -0.74 -8.34 16
26 C 0.06 1.36 5.55 86.38 0.48 1.84 16
27 C 0.12 2.74 6.62 86.35 0.57 3.32 16
28 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16
29 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16
30 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16
31 H 0.04 1.96 8.14 -2.38 -0.02 1.95 16
32 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16
33 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16
34 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16
35 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16
36 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16
37 H 0.10 2.48 6.87 -2.39 -0.02 2.47 16
38 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16
39 H 0.11 2.31 7.85 -2.39 -0.02 2.29 16
40 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
41 H 0.28 -0.65 8.06 -2.91 -0.02 -0.68 16
42 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16
43 H 0.11 2.26 7.83 -2.39 -0.02 2.24 16
44 H 0.10 2.47 6.87 -2.39 -0.02 2.45 16
45 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16
Total: -1.00 -77.07 360.57 -2.33 -79.40
By element:
Atomic # 1 Polarization: 20.40 SS G_CDS: -0.89 Total: 19.52 kcal
Atomic # 6 Polarization: -39.82 SS G_CDS: 8.45 Total: -31.37 kcal
Atomic # 7 Polarization: -113.56 SS G_CDS: -8.03 Total: -121.59 kcal
Atomic # 8 Polarization: -80.85 SS G_CDS: -3.63 Total: -84.49 kcal
Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal
Atomic # 16 Polarization: 94.54 SS G_CDS: -0.25 Total: 94.29 kcal
Total: -77.07 -2.33 -79.40 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364953709.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.591 kcal
(2) G-P(sol) polarization free energy of solvation -77.068 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.328 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.396 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.196 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds