Wall clock time and date at job start Sat Apr 11 2020 06:51:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.45203 * 109.46810 * 2 1
4 4 C 1.34230 * 116.99605 * 180.02562 * 3 2 1
5 5 O 1.20821 * 120.00037 * 0.02562 * 4 3 2
6 6 C 1.50698 * 119.99650 * 180.02562 * 4 3 2
7 7 C 1.53005 * 109.55477 * 84.87188 * 6 4 3
8 8 C 1.53294 * 109.51075 * 204.99750 * 6 4 3
9 9 N 1.47151 * 108.41538 * 172.24282 * 8 6 4
10 10 C 1.34779 * 120.98245 * 129.42330 * 9 8 6
11 11 O 1.21583 * 120.00042 * 354.78943 * 10 9 8
12 12 N 1.34777 * 120.00245 * 174.78466 * 10 9 8
13 13 C 1.46497 * 120.00337 * 184.97968 * 12 10 9
14 14 C 1.50696 * 109.47507 * 180.02562 * 13 12 10
15 15 O 1.21297 * 119.99763 * 359.97438 * 14 13 12
16 16 N 1.34772 * 120.00210 * 179.97438 * 14 13 12
17 17 C 1.37102 * 119.99828 * 179.97438 * 16 14 13
18 18 H 1.07996 * 120.00143 * 359.97438 * 17 16 14
19 19 C 1.38949 * 119.99525 * 180.02562 * 17 16 14
20 20 N 1.31411 * 120.00446 * 359.97438 * 19 17 16
21 21 Si 1.86811 * 119.99729 * 180.02562 * 19 17 16
22 22 H 1.48501 * 109.47170 * 89.99739 * 21 19 17
23 23 H 1.48501 * 109.46795 * 209.99606 * 21 19 17
24 24 H 1.48503 * 109.47091 * 329.99373 * 21 19 17
25 25 C 1.47157 * 118.03919 * 309.44787 * 9 8 6
26 26 C 1.53292 * 108.38000 * 50.53476 * 25 9 8
27 27 O 1.42963 * 109.22605 * 307.69766 * 26 25 9
28 28 H 1.09006 * 109.47260 * 59.99986 * 1 2 3
29 29 H 1.09002 * 109.47142 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.47546 * 299.99673 * 1 2 3
31 31 H 1.08994 * 109.46860 * 240.00396 * 2 1 3
32 32 H 1.08993 * 109.47128 * 120.00231 * 2 1 3
33 33 H 1.08996 * 109.47033 * 180.12477 * 7 6 4
34 34 H 1.08995 * 109.46884 * 300.12268 * 7 6 4
35 35 H 1.09000 * 109.47046 * 60.12910 * 7 6 4
36 36 H 1.08999 * 109.68031 * 52.50726 * 8 6 4
37 37 H 1.08991 * 109.68679 * 291.98363 * 8 6 4
38 38 H 0.97005 * 119.99808 * 4.98207 * 12 10 9
39 39 H 1.09007 * 109.47061 * 300.00317 * 13 12 10
40 40 H 1.09001 * 109.46917 * 59.99830 * 13 12 10
41 41 H 0.96999 * 120.00215 * 0.02562 * 16 14 13
42 42 H 0.97004 * 120.00100 * 180.02562 * 20 19 17
43 43 H 1.08996 * 109.68600 * 170.25663 * 25 9 8
44 44 H 1.08997 * 109.67937 * 290.77543 * 25 9 8
45 45 H 1.09003 * 109.51669 * 67.62502 * 26 25 9
46 46 H 1.09004 * 109.51303 * 187.77935 * 26 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5449 -0.0005
5 8 4.0807 0.5867 -0.0015
6 6 3.9206 2.9375 0.0000
7 6 3.9979 3.4591 1.4363
8 6 5.3261 2.9104 -0.6113
9 7 5.7902 4.2977 -0.7714
10 6 6.9965 4.6833 -0.3103
11 8 7.6790 3.9073 0.3302
12 7 7.4463 5.9292 -0.5593
13 6 8.8004 6.3139 -0.1536
14 6 9.0538 7.7471 -0.5441
15 8 8.1885 8.3845 -1.1066
16 7 10.2418 8.3207 -0.2685
17 6 10.4725 9.6245 -0.6244
18 1 9.7024 10.1917 -1.1259
19 6 11.6976 10.2156 -0.3407
20 7 12.6348 9.5253 0.2691
21 14 12.0117 11.9924 -0.8248
22 1 11.6026 12.8881 0.2868
23 1 13.4577 12.1806 -1.1057
24 1 11.2244 12.3207 -2.0405
25 6 4.8980 5.2516 -1.4493
26 6 3.5133 5.1654 -0.7975
27 8 3.0865 3.8011 -0.7775
28 1 -0.3634 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 1.8933 -0.5137 -0.8900
32 1 1.8933 -0.5138 0.8899
33 1 4.4126 4.4671 1.4349
34 1 2.9983 3.4780 1.8702
35 1 4.6381 2.8038 2.0269
36 1 5.2940 2.4196 -1.5839
37 1 6.0039 2.3708 0.0501
38 1 6.8734 6.5712 -1.0071
39 1 8.8995 6.2091 0.9269
40 1 9.5254 5.6682 -0.6492
41 1 10.9339 7.8109 0.1809
42 1 13.4899 9.9382 0.4675
43 1 5.2918 6.2623 -1.3423
44 1 4.8234 4.9968 -2.5064
45 1 3.5667 5.5451 0.2228
46 1 2.8030 5.7605 -1.3715
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001470096265.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:51:09
Heat of formation + Delta-G solvation = -177.638997 kcal
Electronic energy + Delta-G solvation = -30526.011447 eV
Core-core repulsion = 26030.942605 eV
Total energy + Delta-G solvation = -4495.068842 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.167 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.45386 -40.33483 -38.99222 -38.10642 -37.05972 -34.94624 -34.57902 -33.81785
-33.01877 -31.93735 -31.40331 -29.47416 -28.18572 -26.35606 -25.48875 -24.32485
-23.64670 -22.48302 -20.71880 -19.74616 -19.46499 -18.81948 -18.24696 -17.94551
-17.17338 -16.89744 -16.50292 -16.19894 -15.71674 -15.60710 -15.17659 -14.83221
-14.75592 -14.49779 -14.38027 -14.17840 -13.97114 -13.71770 -13.56380 -13.35286
-13.17211 -12.82127 -12.53270 -12.42167 -12.30922 -12.06130 -11.98911 -11.94312
-11.78821 -11.65536 -11.27611 -11.14886 -10.90235 -10.69897 -10.49863 -10.48153
-10.34564 -10.07213 -9.66451 -9.03036 -8.66849 -8.57820 -8.13023 -6.53967
-3.96238 1.68059 2.06549 2.52337 3.09507 3.17058 3.20509 3.25531
3.26436 3.71224 3.83912 4.09425 4.17272 4.29757 4.30270 4.53363
4.58297 4.58626 4.75502 4.82609 4.86628 4.90579 5.13067 5.14688
5.20317 5.25828 5.30126 5.37576 5.39195 5.48868 5.55312 5.57555
5.74957 5.85215 5.95595 6.00652 6.03772 6.17361 6.52052 6.65073
6.83411 7.34332 7.43425 7.89308 8.00862 8.41682 8.62978 9.01719
9.36295 9.83758 10.62742
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.035971 B = 0.001912 C = 0.001852
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 778.222030 B =14642.859895 C =15118.675301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.057 3.943
3 O -0.340 6.340
4 C 0.490 3.510
5 O -0.493 6.493
6 C 0.114 3.886
7 C -0.174 4.174
8 C 0.124 3.876
9 N -0.633 5.633
10 C 0.711 3.289
11 O -0.588 6.588
12 N -0.722 5.722
13 C 0.127 3.873
14 C 0.428 3.572
15 O -0.600 6.600
16 N -0.547 5.547
17 C -0.306 4.306
18 H 0.106 0.894
19 C 0.026 3.974
20 N -0.893 5.893
21 Si 0.933 3.067
22 H -0.277 1.277
23 H -0.282 1.282
24 H -0.269 1.269
25 C 0.071 3.929
26 C 0.045 3.955
27 O -0.356 6.356
28 H 0.068 0.932
29 H 0.079 0.921
30 H 0.067 0.933
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.083 0.917
34 H 0.076 0.924
35 H 0.080 0.920
36 H 0.079 0.921
37 H 0.117 0.883
38 H 0.406 0.594
39 H 0.084 0.916
40 H 0.083 0.917
41 H 0.396 0.604
42 H 0.275 0.725
43 H 0.099 0.901
44 H 0.082 0.918
45 H 0.067 0.933
46 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.653 -14.943 -0.054 26.309
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.016 4.016
3 O -0.256 6.256
4 C 0.331 3.669
5 O -0.380 6.380
6 C 0.072 3.928
7 C -0.231 4.231
8 C 0.000 4.000
9 N -0.372 5.372
10 C 0.413 3.587
11 O -0.466 6.466
12 N -0.381 5.381
13 C -0.002 4.002
14 C 0.214 3.786
15 O -0.487 6.487
16 N -0.182 5.182
17 C -0.435 4.435
18 H 0.123 0.877
19 C -0.177 4.177
20 N -0.533 5.533
21 Si 0.760 3.240
22 H -0.203 1.203
23 H -0.208 1.208
24 H -0.193 1.193
25 C -0.053 4.053
26 C -0.032 4.032
27 O -0.275 6.275
28 H 0.087 0.913
29 H 0.098 0.902
30 H 0.086 0.914
31 H 0.090 0.910
32 H 0.089 0.911
33 H 0.102 0.898
34 H 0.095 0.905
35 H 0.099 0.901
36 H 0.097 0.903
37 H 0.135 0.865
38 H 0.246 0.754
39 H 0.102 0.898
40 H 0.101 0.899
41 H 0.230 0.770
42 H 0.084 0.916
43 H 0.117 0.883
44 H 0.100 0.900
45 H 0.085 0.915
46 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -21.421 -15.373 -0.006 26.367
hybrid contribution 0.656 0.875 -0.069 1.096
sum -20.765 -14.497 -0.075 25.325
Atomic orbital electron populations
1.21801 0.92384 1.02983 1.03729 1.23117 0.95649 0.80100 1.02754
1.86593 1.23660 1.32267 1.83082 1.22836 0.81136 0.90660 0.72256
1.90732 1.60633 1.41596 1.45021 1.21636 0.90902 0.85860 0.94414
1.22348 1.03926 1.03673 0.93167 1.21808 0.92659 0.82907 1.02629
1.47126 1.17087 1.10461 1.62557 1.15664 0.80813 0.82533 0.79714
1.90918 1.57302 1.53527 1.44805 1.44927 1.16942 1.12087 1.64166
1.20827 0.82965 0.95359 1.01001 1.19722 0.84499 0.88120 0.86297
1.90483 1.45276 1.64705 1.48189 1.41785 1.12542 1.12794 1.51079
1.19728 1.00036 0.87422 1.36356 0.87653 1.25332 0.95230 1.00519
0.96593 1.69615 1.05742 1.37651 1.40323 0.85810 0.77560 0.81503
0.79123 1.20261 1.20788 1.19326 1.22441 0.90628 0.94418 0.97815
1.23149 0.95631 0.82659 1.01795 1.88100 1.50463 1.18779 1.70183
0.91292 0.90178 0.91407 0.91019 0.91079 0.89780 0.90517 0.90139
0.90251 0.86493 0.75384 0.89829 0.89940 0.76988 0.91553 0.88301
0.89981 0.91480 0.86566
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16
2 C 0.06 0.44 6.19 37.16 0.23 0.67 16
3 O -0.34 -3.50 9.98 -44.37 -0.44 -3.95 16
4 C 0.49 5.63 6.83 36.00 0.25 5.88 16
5 O -0.49 -6.58 16.00 -18.75 -0.30 -6.88 16
6 C 0.11 1.23 1.06 -91.62 -0.10 1.14 16
7 C -0.17 -1.70 8.08 37.16 0.30 -1.40 16
8 C 0.12 1.52 4.72 -3.53 -0.02 1.50 16
9 N -0.63 -8.03 2.54 -178.01 -0.45 -8.48 16
10 C 0.71 11.48 8.31 -86.91 -0.72 10.76 16
11 O -0.59 -11.30 15.82 5.29 0.08 -11.21 16
12 N -0.72 -11.87 5.44 -66.42 -0.36 -12.23 16
13 C 0.13 2.31 6.16 -5.20 -0.03 2.27 16
14 C 0.43 9.58 7.85 -10.99 -0.09 9.50 16
15 O -0.60 -14.86 15.24 5.54 0.08 -14.77 16
16 N -0.55 -13.33 5.29 -10.97 -0.06 -13.39 16
17 C -0.31 -8.18 9.68 -14.93 -0.14 -8.33 16
18 H 0.11 2.93 7.16 -52.49 -0.38 2.55 16
19 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16
20 N -0.89 -23.57 13.05 55.50 0.72 -22.85 16
21 Si 0.93 20.25 29.55 -169.99 -5.02 15.23 16
22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
23 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16
24 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16
25 C 0.07 0.68 6.57 -3.53 -0.02 0.66 16
26 C 0.04 0.37 6.60 37.31 0.25 0.61 16
27 O -0.36 -3.66 10.02 -48.87 -0.49 -4.15 16
28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16
30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
31 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16
32 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16
33 H 0.08 0.85 6.11 -51.93 -0.32 0.54 16
34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
37 H 0.12 1.63 7.03 -51.93 -0.37 1.26 16
38 H 0.41 6.41 4.99 -40.82 -0.20 6.20 16
39 H 0.08 1.47 8.14 -51.92 -0.42 1.04 16
40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16
41 H 0.40 9.31 7.90 -40.82 -0.32 8.99 16
42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16
43 H 0.10 0.95 5.78 -51.93 -0.30 0.65 16
44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16
45 H 0.07 0.54 6.25 -51.93 -0.32 0.21 16
46 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16
LS Contribution 383.31 15.07 5.78 5.78
Total: -1.00 -32.80 383.31 -6.69 -39.48
By element:
Atomic # 1 Polarization: 20.39 SS G_CDS: -6.42 Total: 13.98 kcal
Atomic # 6 Polarization: 23.26 SS G_CDS: 0.19 Total: 23.45 kcal
Atomic # 7 Polarization: -56.80 SS G_CDS: -0.15 Total: -56.95 kcal
Atomic # 8 Polarization: -39.90 SS G_CDS: -1.06 Total: -40.96 kcal
Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -32.80 -6.69 -39.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001470096265.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -138.156 kcal
(2) G-P(sol) polarization free energy of solvation -32.795 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.951 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) -177.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds