Wall clock time and date at job start Sat Apr 11 2020 06:51:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.45203 * 109.46810 * 2 1
4 4 C 1.34230 * 116.99605 * 180.02562 * 3 2 1
5 5 O 1.20821 * 120.00037 * 0.02562 * 4 3 2
6 6 C 1.50698 * 119.99650 * 180.02562 * 4 3 2
7 7 C 1.53005 * 109.55477 * 84.87188 * 6 4 3
8 8 C 1.53294 * 109.51075 * 204.99750 * 6 4 3
9 9 N 1.47151 * 108.41538 * 172.24282 * 8 6 4
10 10 C 1.34779 * 120.98245 * 129.42330 * 9 8 6
11 11 O 1.21583 * 120.00042 * 354.78943 * 10 9 8
12 12 N 1.34777 * 120.00245 * 174.78466 * 10 9 8
13 13 C 1.46497 * 120.00337 * 184.97968 * 12 10 9
14 14 C 1.50696 * 109.47507 * 180.02562 * 13 12 10
15 15 O 1.21297 * 119.99763 * 359.97438 * 14 13 12
16 16 N 1.34772 * 120.00210 * 179.97438 * 14 13 12
17 17 C 1.37102 * 119.99828 * 179.97438 * 16 14 13
18 18 H 1.07996 * 120.00143 * 359.97438 * 17 16 14
19 19 C 1.38949 * 119.99525 * 180.02562 * 17 16 14
20 20 N 1.31411 * 120.00446 * 359.97438 * 19 17 16
21 21 Si 1.86811 * 119.99729 * 180.02562 * 19 17 16
22 22 H 1.48501 * 109.47170 * 89.99739 * 21 19 17
23 23 H 1.48501 * 109.46795 * 209.99606 * 21 19 17
24 24 H 1.48503 * 109.47091 * 329.99373 * 21 19 17
25 25 C 1.47157 * 118.03919 * 309.44787 * 9 8 6
26 26 C 1.53292 * 108.38000 * 50.53476 * 25 9 8
27 27 O 1.42963 * 109.22605 * 307.69766 * 26 25 9
28 28 H 1.09006 * 109.47260 * 59.99986 * 1 2 3
29 29 H 1.09002 * 109.47142 * 179.97438 * 1 2 3
30 30 H 1.08999 * 109.47546 * 299.99673 * 1 2 3
31 31 H 1.08994 * 109.46860 * 240.00396 * 2 1 3
32 32 H 1.08993 * 109.47128 * 120.00231 * 2 1 3
33 33 H 1.08996 * 109.47033 * 180.12477 * 7 6 4
34 34 H 1.08995 * 109.46884 * 300.12268 * 7 6 4
35 35 H 1.09000 * 109.47046 * 60.12910 * 7 6 4
36 36 H 1.08999 * 109.68031 * 52.50726 * 8 6 4
37 37 H 1.08991 * 109.68679 * 291.98363 * 8 6 4
38 38 H 0.97005 * 119.99808 * 4.98207 * 12 10 9
39 39 H 1.09007 * 109.47061 * 300.00317 * 13 12 10
40 40 H 1.09001 * 109.46917 * 59.99830 * 13 12 10
41 41 H 0.96999 * 120.00215 * 0.02562 * 16 14 13
42 42 H 0.97004 * 120.00100 * 180.02562 * 20 19 17
43 43 H 1.08996 * 109.68600 * 170.25663 * 25 9 8
44 44 H 1.08997 * 109.67937 * 290.77543 * 25 9 8
45 45 H 1.09003 * 109.51669 * 67.62502 * 26 25 9
46 46 H 1.09004 * 109.51303 * 187.77935 * 26 25 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3690 0.0000
4 6 3.3447 1.5449 -0.0005
5 8 4.0807 0.5867 -0.0015
6 6 3.9206 2.9375 0.0000
7 6 3.9979 3.4591 1.4363
8 6 5.3261 2.9104 -0.6113
9 7 5.7902 4.2977 -0.7714
10 6 6.9965 4.6833 -0.3103
11 8 7.6790 3.9073 0.3302
12 7 7.4463 5.9292 -0.5593
13 6 8.8004 6.3139 -0.1536
14 6 9.0538 7.7471 -0.5441
15 8 8.1885 8.3845 -1.1066
16 7 10.2418 8.3207 -0.2685
17 6 10.4725 9.6245 -0.6244
18 1 9.7024 10.1917 -1.1259
19 6 11.6976 10.2156 -0.3407
20 7 12.6348 9.5253 0.2691
21 14 12.0117 11.9924 -0.8248
22 1 11.6026 12.8881 0.2868
23 1 13.4577 12.1806 -1.1057
24 1 11.2244 12.3207 -2.0405
25 6 4.8980 5.2516 -1.4493
26 6 3.5133 5.1654 -0.7975
27 8 3.0865 3.8011 -0.7775
28 1 -0.3634 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5138 0.8900
31 1 1.8933 -0.5137 -0.8900
32 1 1.8933 -0.5138 0.8899
33 1 4.4126 4.4671 1.4349
34 1 2.9983 3.4780 1.8702
35 1 4.6381 2.8038 2.0269
36 1 5.2940 2.4196 -1.5839
37 1 6.0039 2.3708 0.0501
38 1 6.8734 6.5712 -1.0071
39 1 8.8995 6.2091 0.9269
40 1 9.5254 5.6682 -0.6492
41 1 10.9339 7.8109 0.1809
42 1 13.4899 9.9382 0.4675
43 1 5.2918 6.2623 -1.3423
44 1 4.8234 4.9968 -2.5064
45 1 3.5667 5.5451 0.2228
46 1 2.8030 5.7605 -1.3715
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001470096265.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:51:08
Heat of formation + Delta-G solvation = -200.742573 kcal
Electronic energy + Delta-G solvation = -30527.013293 eV
Core-core repulsion = 26030.942605 eV
Total energy + Delta-G solvation = -4496.070688 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 343.167 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.38020 -41.41806 -40.32614 -39.59313 -37.89999 -36.28697 -36.01902 -35.38818
-33.91823 -33.35427 -32.49390 -30.31999 -29.60385 -27.55743 -26.52268 -25.90201
-24.34266 -23.27412 -21.76602 -21.40729 -20.54564 -20.16248 -19.72581 -19.10795
-18.04779 -17.75409 -17.62114 -17.43402 -17.11248 -16.82451 -16.52816 -16.07868
-15.98995 -15.79356 -15.69155 -15.20060 -15.02739 -14.90265 -14.88369 -14.23946
-14.02507 -13.63474 -13.62851 -13.61488 -13.52919 -13.27768 -13.10344 -12.95715
-12.89891 -12.64569 -12.50581 -12.44316 -12.12692 -12.08769 -11.67939 -11.56494
-11.55801 -11.36222 -11.29094 -10.55093 -10.35669 -10.08683 -9.64956 -8.49951
-6.00144 0.79717 1.12479 1.37412 1.44112 1.52670 1.57564 1.88551
1.97765 2.27460 2.43424 2.68961 3.13438 3.17460 3.26110 3.46304
3.53854 3.80956 3.99319 4.00684 4.06134 4.12301 4.20656 4.29775
4.33342 4.38614 4.42191 4.45011 4.49054 4.54510 4.71390 4.77054
4.82790 4.93350 4.98092 5.08690 5.17268 5.24263 5.35440 5.39628
5.66818 5.75472 5.92872 6.48357 6.49677 6.76503 7.04325 7.33358
7.46037 7.94660 8.66780
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.035971 B = 0.001912 C = 0.001852
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 778.222030 B =14642.859895 C =15118.675301
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.048 3.952
3 O -0.343 6.343
4 C 0.492 3.508
5 O -0.518 6.518
6 C 0.119 3.881
7 C -0.170 4.170
8 C 0.124 3.876
9 N -0.625 5.625
10 C 0.712 3.288
11 O -0.622 6.622
12 N -0.720 5.720
13 C 0.140 3.860
14 C 0.435 3.565
15 O -0.622 6.622
16 N -0.559 5.559
17 C -0.337 4.337
18 H 0.088 0.912
19 C -0.011 4.011
20 N -0.916 5.916
21 Si 0.997 3.003
22 H -0.270 1.270
23 H -0.273 1.273
24 H -0.269 1.269
25 C 0.066 3.934
26 C 0.045 3.955
27 O -0.360 6.360
28 H 0.068 0.932
29 H 0.101 0.899
30 H 0.069 0.931
31 H 0.071 0.929
32 H 0.073 0.927
33 H 0.081 0.919
34 H 0.092 0.908
35 H 0.073 0.927
36 H 0.083 0.917
37 H 0.097 0.903
38 H 0.411 0.589
39 H 0.093 0.907
40 H 0.092 0.908
41 H 0.399 0.601
42 H 0.279 0.721
43 H 0.101 0.899
44 H 0.095 0.905
45 H 0.071 0.929
46 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.223 -14.589 -0.351 27.427
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.025 4.025
3 O -0.259 6.259
4 C 0.334 3.666
5 O -0.407 6.407
6 C 0.077 3.923
7 C -0.227 4.227
8 C 0.000 4.000
9 N -0.363 5.363
10 C 0.413 3.587
11 O -0.502 6.502
12 N -0.380 5.380
13 C 0.011 3.989
14 C 0.222 3.778
15 O -0.510 6.510
16 N -0.194 5.194
17 C -0.466 4.466
18 H 0.106 0.894
19 C -0.211 4.211
20 N -0.556 5.556
21 Si 0.820 3.180
22 H -0.196 1.196
23 H -0.198 1.198
24 H -0.194 1.194
25 C -0.057 4.057
26 C -0.031 4.031
27 O -0.279 6.279
28 H 0.087 0.913
29 H 0.120 0.880
30 H 0.088 0.912
31 H 0.089 0.911
32 H 0.091 0.909
33 H 0.099 0.901
34 H 0.111 0.889
35 H 0.092 0.908
36 H 0.101 0.899
37 H 0.115 0.885
38 H 0.251 0.749
39 H 0.111 0.889
40 H 0.110 0.890
41 H 0.233 0.767
42 H 0.089 0.911
43 H 0.119 0.881
44 H 0.113 0.887
45 H 0.090 0.910
46 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -23.046 -15.027 -0.315 27.514
hybrid contribution 1.039 0.690 -0.005 1.247
sum -22.007 -14.337 -0.320 26.267
Atomic orbital electron populations
1.21823 0.90252 1.04426 1.03775 1.23422 0.97305 0.78864 1.02904
1.86587 1.22774 1.33945 1.82581 1.22917 0.81457 0.90574 0.71614
1.90720 1.61243 1.42431 1.46312 1.21474 0.89913 0.86031 0.94893
1.22322 1.04704 1.03163 0.92528 1.21788 0.93293 0.82367 1.02518
1.47112 1.16298 1.11152 1.61782 1.15711 0.81542 0.81909 0.79517
1.90896 1.58660 1.54284 1.46388 1.44812 1.16314 1.12456 1.64391
1.20628 0.84266 0.92380 1.01600 1.20338 0.83431 0.89388 0.84670
1.90461 1.45840 1.65894 1.48851 1.41830 1.13320 1.12448 1.51793
1.19749 1.00408 0.88619 1.37809 0.89383 1.26126 0.94591 1.04288
0.96119 1.69683 1.06085 1.39143 1.40672 0.84867 0.77646 0.76707
0.78753 1.19578 1.19837 1.19379 1.22704 0.90808 0.93700 0.98460
1.23350 0.95274 0.81973 1.02537 1.88108 1.50178 1.19575 1.69997
0.91333 0.88034 0.91211 0.91052 0.90857 0.90054 0.88945 0.90831
0.89931 0.88490 0.74875 0.88877 0.89027 0.76723 0.91116 0.88101
0.88652 0.91035 0.83469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.21 10.29 71.98 0.74 -0.47 16
2 C 0.05 0.68 6.19 71.98 0.45 1.12 16
3 O -0.34 -6.70 9.98 -46.53 -0.46 -7.16 16
4 C 0.49 11.04 6.83 71.24 0.49 11.53 16
5 O -0.52 -13.91 16.00 21.98 0.35 -13.55 16
6 C 0.12 2.47 1.06 -11.44 -0.01 2.46 16
7 C -0.17 -3.17 8.08 71.98 0.58 -2.59 16
8 C 0.12 3.01 4.72 86.35 0.41 3.42 16
9 N -0.63 -15.35 2.54 -835.37 -2.12 -17.47 16
10 C 0.71 22.65 8.31 179.05 1.49 24.14 16
11 O -0.62 -23.99 15.82 -3.98 -0.06 -24.05 16
12 N -0.72 -23.17 5.44 -482.30 -2.62 -25.80 16
13 C 0.14 5.02 6.16 85.63 0.53 5.54 16
14 C 0.43 19.47 7.85 87.66 0.69 20.16 16
15 O -0.62 -30.83 15.24 -3.08 -0.05 -30.88 16
16 N -0.56 -27.46 5.29 -306.99 -1.62 -29.09 16
17 C -0.34 -18.17 9.68 84.04 0.81 -17.36 16
18 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16
19 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16
20 N -0.92 -48.12 13.05 21.66 0.28 -47.84 16
21 Si 1.00 41.09 29.55 68.60 2.03 43.11 16
22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16
23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16
24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16
25 C 0.07 1.15 6.57 86.35 0.57 1.71 16
26 C 0.05 0.63 6.60 72.08 0.48 1.10 16
27 O -0.36 -6.66 10.02 -135.94 -1.36 -8.02 16
28 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16
29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16
30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
31 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16
32 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16
33 H 0.08 1.56 6.11 -2.39 -0.01 1.55 16
34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16
35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
37 H 0.10 2.78 7.03 -2.39 -0.02 2.76 16
38 H 0.41 12.57 4.99 -92.70 -0.46 12.11 16
39 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16
40 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16
41 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16
42 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16
43 H 0.10 1.76 5.78 -2.39 -0.01 1.75 16
44 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16
45 H 0.07 0.97 6.25 -2.39 -0.01 0.96 16
46 H 0.15 1.19 8.14 -2.38 -0.02 1.17 16
Total: -1.00 -69.98 383.31 1.88 -68.10
By element:
Atomic # 1 Polarization: 42.09 SS G_CDS: -0.16 Total: 41.94 kcal
Atomic # 6 Polarization: 43.03 SS G_CDS: 7.68 Total: 50.70 kcal
Atomic # 7 Polarization: -114.11 SS G_CDS: -6.08 Total: -120.19 kcal
Atomic # 8 Polarization: -82.07 SS G_CDS: -1.59 Total: -83.66 kcal
Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal
Total: -69.98 1.88 -68.10 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001470096265.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -132.642 kcal
(2) G-P(sol) polarization free energy of solvation -69.977 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.619 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) -200.743 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds