Wall clock time and date at job start Sat Apr 11 2020 06:51:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46490 * 1
3 3 C 1.36942 * 120.00288 * 2 1
4 4 H 1.07996 * 120.00615 * 201.81864 * 3 2 1
5 5 C 1.38811 * 119.99457 * 21.81225 * 3 2 1
6 6 N 1.31619 * 120.00429 * 15.25167 * 5 3 2
7 7 Si 1.86809 * 119.99836 * 195.24956 * 5 3 2
8 8 H 1.48494 * 109.46932 * 0.02562 * 7 5 3
9 9 H 1.48491 * 109.46845 * 120.00513 * 7 5 3
10 10 H 1.48501 * 109.46806 * 240.00377 * 7 5 3
11 11 C 1.46498 * 120.00161 * 179.97438 * 2 1 3
12 12 C 1.50700 * 109.47462 * 273.78343 * 11 2 1
13 13 C 1.38259 * 119.99502 * 357.98524 * 12 11 2
14 14 C 1.38216 * 119.99822 * 180.27978 * 13 12 11
15 15 C 1.38260 * 119.99841 * 359.48054 * 14 13 12
16 16 C 1.38213 * 119.99982 * 0.49783 * 15 14 13
17 17 C 1.38204 * 120.00521 * 178.00477 * 12 11 2
18 18 C 1.50700 * 120.00005 * 359.97438 * 17 12 11
19 19 N 1.46508 * 109.46869 * 75.39787 * 18 17 12
20 20 C 1.34776 * 119.99709 * 180.02562 * 19 18 17
21 21 O 1.21555 * 120.00246 * 0.02562 * 20 19 18
22 22 C 1.47850 * 119.99839 * 179.97438 * 20 19 18
23 23 C 1.39556 * 120.54455 * 359.72682 * 22 20 19
24 24 N 1.31660 * 120.61969 * 179.67838 * 23 22 20
25 25 C 1.31947 * 121.90694 * 0.62909 * 24 23 22
26 26 C 1.38540 * 121.04070 * 359.65822 * 25 24 23
27 27 F 1.35099 * 120.36819 * 179.97438 * 26 25 24
28 28 C 1.38607 * 119.25329 * 0.02562 * 26 25 24
29 29 H 1.09001 * 109.47460 * 273.48769 * 1 2 3
30 30 H 1.09003 * 109.46951 * 33.49398 * 1 2 3
31 31 H 1.09006 * 109.47370 * 153.48788 * 1 2 3
32 32 H 0.97003 * 120.00106 * 179.97438 * 6 5 3
33 33 H 1.09003 * 109.47208 * 153.78503 * 11 2 1
34 34 H 1.09002 * 109.47527 * 33.78410 * 11 2 1
35 35 H 1.07993 * 120.00216 * 359.97438 * 13 12 11
36 36 H 1.07998 * 120.00272 * 179.72094 * 14 13 12
37 37 H 1.07997 * 119.99928 * 180.25464 * 15 14 13
38 38 H 1.08002 * 119.99921 * 179.76107 * 16 15 14
39 39 H 1.09004 * 109.47550 * 195.39580 * 18 17 12
40 40 H 1.08996 * 109.47162 * 315.39635 * 18 17 12
41 41 H 0.96993 * 120.00233 * 359.97438 * 19 18 17
42 42 H 1.07992 * 119.69221 * 359.97438 * 23 22 20
43 43 H 1.07998 * 119.47891 * 179.67709 * 25 24 23
44 44 H 1.08008 * 120.86388 * 180.02562 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4649 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1716 1.2195 -0.3476
5 6 1.5301 2.3450 0.4467
6 7 0.4146 2.2693 1.1411
7 14 2.2796 4.0124 0.0623
8 1 3.5237 3.8257 -0.7267
9 1 1.3126 4.8205 -0.7230
10 1 2.5981 4.7161 1.3306
11 6 2.1974 -1.2687 0.0006
12 6 2.3675 -1.7500 1.4185
13 6 1.8949 -0.9857 2.4692
14 6 2.0559 -1.4244 3.7700
15 6 2.6801 -2.6326 4.0198
16 6 3.1521 -3.3968 2.9694
17 6 2.9961 -2.9552 1.6685
18 6 3.5111 -3.7883 0.5232
19 7 4.7410 -3.1898 -0.0016
20 6 5.3830 -3.7672 -1.0364
21 8 4.9414 -4.7843 -1.5345
22 6 6.6239 -3.1630 -1.5665
23 6 7.1373 -1.9918 -1.0076
24 7 8.2457 -1.4558 -1.4744
25 6 8.9054 -1.9877 -2.4857
26 6 8.4588 -3.1466 -3.0996
27 9 9.1447 -3.6793 -4.1345
28 6 7.2999 -3.7528 -2.6406
29 1 -0.3634 0.0625 1.0257
30 1 -0.3633 0.8570 -0.5671
31 1 -0.3634 -0.9196 -0.4588
32 1 -0.0181 3.0793 1.4536
33 1 3.1776 -1.1226 -0.4535
34 1 1.6395 -2.0107 -0.5705
35 1 1.4043 -0.0437 2.2739
36 1 1.6908 -0.8253 4.5911
37 1 2.8022 -2.9773 5.0360
38 1 3.6430 -4.3387 3.1647
39 1 3.7199 -4.7990 0.8741
40 1 2.7598 -3.8256 -0.2656
41 1 5.0928 -2.3776 0.3951
42 1 6.6233 -1.5232 -0.1815
43 1 9.8079 -1.5123 -2.8404
44 1 6.9285 -4.6572 -3.0997
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700092038.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:51:21
Heat of formation + Delta-G solvation = 11.872611 kcal
Electronic energy + Delta-G solvation = -29187.341848 eV
Core-core repulsion = 25020.172556 eV
Total energy + Delta-G solvation = -4167.169293 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.144 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-49.34898 -40.86403 -39.53997 -38.70259 -35.61824 -35.05621 -32.96204 -32.14615
-31.70270 -30.63653 -29.92395 -26.78460 -26.08104 -25.56907 -24.40890 -23.96911
-22.20901 -21.02084 -20.92910 -20.03060 -18.66682 -17.73559 -17.29120 -16.80382
-16.62531 -16.23036 -15.96912 -15.69730 -15.58759 -14.88250 -14.52893 -14.29713
-14.24652 -13.89664 -13.69610 -13.66607 -13.52536 -13.22846 -12.99698 -12.80170
-12.59364 -12.44355 -12.20623 -11.60878 -11.37907 -10.93240 -10.81716 -10.70546
-10.56642 -10.46539 -10.33238 -10.31217 -10.05826 -9.91029 -9.86386 -9.45843
-9.14331 -8.62740 -8.36660 -8.07837 -6.90652 -5.83079 -3.28093 0.13851
0.60182 1.64522 1.95010 2.54958 2.99058 3.33017 3.38661 3.41936
3.42828 3.60950 3.90947 4.25894 4.30738 4.36055 4.43264 4.45481
4.72745 4.86891 5.15958 5.19389 5.27291 5.36361 5.40097 5.50100
5.51237 5.54720 5.72680 5.77486 5.96656 6.08413 6.17857 6.25306
6.31198 6.39219 6.51057 6.68927 6.69796 6.86509 7.15519 7.27218
7.29731 7.32177 7.39356 7.62719 7.65693 7.75384 7.97376 8.29334
9.13845 9.76130 10.24944 11.22058
Molecular weight = 343.14amu
Principal moments of inertia in cm(-1)
A = 0.009199 B = 0.003494 C = 0.002822
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3043.112476 B = 8011.377336 C = 9920.477847
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.159 3.841
2 N -0.598 5.598
3 C -0.255 4.255
4 H 0.068 0.932
5 C 0.006 3.994
6 N -0.905 5.905
7 Si 0.900 3.100
8 H -0.278 1.278
9 H -0.290 1.290
10 H -0.290 1.290
11 C 0.181 3.819
12 C -0.076 4.076
13 C -0.086 4.086
14 C -0.119 4.119
15 C -0.140 4.140
16 C -0.113 4.113
17 C -0.131 4.131
18 C 0.169 3.831
19 N -0.710 5.710
20 C 0.563 3.437
21 O -0.534 6.534
22 C -0.154 4.154
23 C 0.129 3.871
24 N -0.455 5.455
25 C 0.097 3.903
26 C 0.041 3.959
27 F -0.126 7.126
28 C -0.052 4.052
29 H 0.030 0.970
30 H 0.045 0.955
31 H -0.002 1.002
32 H 0.253 0.747
33 H 0.060 0.940
34 H 0.051 0.949
35 H 0.163 0.837
36 H 0.114 0.886
37 H 0.111 0.889
38 H 0.112 0.888
39 H 0.073 0.927
40 H 0.080 0.920
41 H 0.404 0.596
42 H 0.170 0.830
43 H 0.173 0.827
44 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.803 -11.599 -1.159 16.589
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.015 3.985
2 N -0.320 5.320
3 C -0.385 4.385
4 H 0.086 0.914
5 C -0.193 4.193
6 N -0.550 5.550
7 Si 0.731 3.269
8 H -0.203 1.203
9 H -0.216 1.216
10 H -0.217 1.217
11 C 0.053 3.947
12 C -0.079 4.079
13 C -0.104 4.104
14 C -0.137 4.137
15 C -0.158 4.158
16 C -0.132 4.132
17 C -0.132 4.132
18 C 0.046 3.954
19 N -0.361 5.361
20 C 0.348 3.652
21 O -0.411 6.411
22 C -0.159 4.159
23 C -0.030 4.030
24 N -0.163 5.163
25 C -0.062 4.062
26 C 0.019 3.981
27 F -0.105 7.105
28 C -0.079 4.079
29 H 0.048 0.952
30 H 0.064 0.936
31 H 0.017 0.983
32 H 0.063 0.937
33 H 0.078 0.922
34 H 0.069 0.931
35 H 0.180 0.820
36 H 0.132 0.868
37 H 0.129 0.871
38 H 0.130 0.870
39 H 0.092 0.908
40 H 0.098 0.902
41 H 0.240 0.760
42 H 0.187 0.813
43 H 0.190 0.810
44 H 0.178 0.822
Dipole moment (debyes) X Y Z Total
from point charges 11.680 -11.438 -1.119 16.385
hybrid contribution 0.266 0.547 -0.294 0.676
sum 11.945 -10.891 -1.413 16.226
Atomic orbital electron populations
1.20845 0.82359 0.95946 0.99364 1.43953 1.01933 1.00457 1.85616
1.19203 0.97748 0.85053 1.36450 0.91384 1.24929 0.97897 0.98310
0.98142 1.70040 1.19904 1.27126 1.37919 0.86251 0.78542 0.84477
0.77679 1.20328 1.21630 1.21737 1.19922 0.96428 0.88354 0.89971
1.21308 0.94576 0.92414 0.99630 1.21812 0.96660 1.01138 0.90772
1.21308 0.99003 0.95926 0.97481 1.20986 1.00831 0.95771 0.98220
1.20827 1.00760 0.99498 0.92097 1.19602 1.03391 0.96636 0.93572
1.20172 0.85273 0.95399 0.94510 1.46032 1.26679 1.29667 1.33708
1.17856 0.83135 0.84055 0.80115 1.90795 1.67090 1.24234 1.59024
1.20945 0.98030 0.98133 0.98810 1.23189 0.91286 0.90877 0.97608
1.67802 1.07174 1.30907 1.10377 1.23191 0.99791 0.91423 0.91759
1.18666 0.93606 0.96155 0.89624 1.91553 1.78212 1.85574 1.55127
1.21772 0.91974 1.00034 0.94139 0.95155 0.93605 0.98335 0.93654
0.92224 0.93123 0.81990 0.86825 0.87055 0.86981 0.90829 0.90204
0.75966 0.81309 0.80981 0.82162
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.70 8.61 59.84 0.52 4.21 16
2 N -0.60 -13.77 1.74 -182.50 -0.32 -14.09 16
3 C -0.26 -6.46 9.17 -15.06 -0.14 -6.60 16
4 H 0.07 1.71 7.84 -52.49 -0.41 1.30 16
5 C 0.01 0.15 5.04 -17.43 -0.09 0.06 16
6 N -0.90 -24.40 10.78 55.49 0.60 -23.80 16
7 Si 0.90 20.88 29.58 -169.99 -5.03 15.85 16
8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
11 C 0.18 3.43 5.00 -5.19 -0.03 3.40 16
12 C -0.08 -1.33 5.88 -104.63 -0.62 -1.95 16
13 C -0.09 -1.67 9.14 -39.58 -0.36 -2.03 16
14 C -0.12 -1.97 10.05 -39.58 -0.40 -2.37 16
15 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16
16 C -0.11 -1.53 9.67 -39.58 -0.38 -1.91 16
17 C -0.13 -1.90 5.25 -104.63 -0.55 -2.45 16
18 C 0.17 2.17 5.15 -5.19 -0.03 2.14 16
19 N -0.71 -8.46 4.98 -62.42 -0.31 -8.77 16
20 C 0.56 7.20 7.78 -12.33 -0.10 7.10 16
21 O -0.53 -8.36 16.42 5.32 0.09 -8.27 16
22 C -0.15 -1.70 5.89 -104.83 -0.62 -2.32 16
23 C 0.13 1.35 10.71 -17.13 -0.18 1.16 16
24 N -0.46 -4.98 10.34 -12.86 -0.13 -5.12 16
25 C 0.10 0.89 11.16 -17.39 -0.19 0.69 16
26 C 0.04 0.39 7.33 -39.33 -0.29 0.11 16
27 F -0.13 -1.21 17.28 2.25 0.04 -1.17 16
28 C -0.05 -0.54 9.70 -38.80 -0.38 -0.92 16
29 H 0.03 0.75 6.81 -51.93 -0.35 0.39 16
30 H 0.05 1.15 7.21 -51.93 -0.37 0.77 16
31 H 0.00 -0.04 7.89 -51.93 -0.41 -0.45 16
32 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16
33 H 0.06 1.09 7.51 -51.93 -0.39 0.70 16
34 H 0.05 0.92 7.30 -51.93 -0.38 0.54 16
35 H 0.16 3.82 5.75 -52.49 -0.30 3.51 16
36 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16
37 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16
38 H 0.11 1.25 8.00 -52.49 -0.42 0.83 16
39 H 0.07 0.88 7.96 -51.93 -0.41 0.47 16
40 H 0.08 1.10 7.22 -51.93 -0.37 0.72 16
41 H 0.40 4.38 6.53 -40.82 -0.27 4.11 16
42 H 0.17 1.50 6.42 -52.49 -0.34 1.16 16
43 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16
44 H 0.16 1.59 7.74 -52.48 -0.41 1.18 16
LS Contribution 374.68 15.07 5.65 5.65
Total: -1.00 -29.21 374.68 -8.88 -38.09
By element:
Atomic # 1 Polarization: 10.91 SS G_CDS: -5.24 Total: 5.67 kcal
Atomic # 6 Polarization: 0.18 SS G_CDS: -4.22 Total: -4.04 kcal
Atomic # 7 Polarization: -51.61 SS G_CDS: -0.16 Total: -51.77 kcal
Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal
Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -29.21 -8.88 -38.09 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700092038.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.967 kcal
(2) G-P(sol) polarization free energy of solvation -29.212 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.755 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.095 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.873 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds