Wall clock time and date at job start Sat Apr 11 2020 06:52:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 120.00061 * 2 1
4 4 H 1.48501 * 109.46556 * 269.99489 * 3 2 1
5 5 H 1.48490 * 109.47223 * 29.99464 * 3 2 1
6 6 H 1.48504 * 109.47122 * 149.99987 * 3 2 1
7 7 C 1.37874 * 119.99904 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00220 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99959 * 0.02562 * 7 2 1
10 10 C 1.53008 * 109.47233 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47309 * 179.97438 * 10 9 7
12 12 S 1.81402 * 109.47166 * 180.02562 * 11 10 9
13 13 O 1.42094 * 110.54187 * 69.86162 * 12 11 10
14 14 O 1.42099 * 110.53776 * 293.11212 * 12 11 10
15 15 N 1.65599 * 104.44680 * 181.48736 * 12 11 10
16 16 C 1.47743 * 125.82227 * 276.50296 * 15 12 11
17 17 C 1.54915 * 104.83769 * 204.25203 * 16 15 12
18 18 C 1.55154 * 101.58426 * 322.90235 * 17 16 15
19 19 C 1.47022 * 125.64709 * 96.50562 * 15 12 11
20 20 H 1.09004 * 109.88596 * 59.32240 * 19 15 12
21 21 C 1.53003 * 109.88266 * 298.31188 * 19 15 12
22 22 H 1.08996 * 109.62495 * 60.70584 * 21 19 15
23 23 C 1.53092 * 109.79828 * 300.18374 * 21 19 15
24 24 C 1.52955 * 109.47841 * 185.52735 * 23 21 19
25 25 C 1.52956 * 109.75936 * 63.64120 * 24 23 21
26 26 C 1.53235 * 109.40505 * 296.43307 * 25 24 23
27 27 C 1.51271 * 109.62366 * 181.08741 * 21 19 15
28 28 O 1.20755 * 120.85300 * 351.22571 * 27 21 19
29 29 H 0.97002 * 119.99723 * 0.02562 * 1 2 3
30 30 H 1.08999 * 109.47459 * 59.99906 * 9 7 2
31 31 H 1.09001 * 109.47295 * 299.99517 * 9 7 2
32 32 H 1.08999 * 109.46444 * 59.99935 * 10 9 7
33 33 H 1.09001 * 109.47116 * 300.00277 * 10 9 7
34 34 H 1.09003 * 109.46906 * 59.99993 * 11 10 9
35 35 H 1.09009 * 109.47237 * 300.00548 * 11 10 9
36 36 H 1.08999 * 110.43501 * 85.37459 * 16 15 12
37 37 H 1.09000 * 110.38558 * 323.10226 * 16 15 12
38 38 H 1.09004 * 111.00216 * 204.82923 * 17 16 15
39 39 H 1.08998 * 111.00672 * 80.98142 * 17 16 15
40 40 H 1.08994 * 110.72035 * 277.14130 * 18 17 16
41 41 H 1.09002 * 110.72190 * 153.86508 * 18 17 16
42 42 H 1.09001 * 109.38000 * 65.56095 * 23 21 19
43 43 H 1.09005 * 109.50571 * 305.56906 * 23 21 19
44 44 H 1.08999 * 109.41693 * 303.56954 * 24 23 21
45 45 H 1.09004 * 109.41135 * 183.70848 * 24 23 21
46 46 H 1.08999 * 109.48709 * 56.41357 * 25 24 23
47 47 H 1.09002 * 109.48250 * 176.45816 * 25 24 23
48 48 H 1.09003 * 109.62491 * 174.33928 * 26 25 24
49 49 H 1.08995 * 109.62503 * 294.91733 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0462 -1.4001
5 1 1.4467 2.6527 0.6999
6 1 3.5468 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4802 -4.9871 0.0012
12 16 2.6590 -6.3659 0.0019
13 8 3.3311 -6.4466 1.2513
14 8 3.3800 -6.4061 -1.2219
15 7 1.7090 -7.7217 -0.0390
16 6 1.0783 -8.3712 1.1285
17 6 0.8627 -9.8429 0.6953
18 6 0.4814 -9.6751 -0.7992
19 6 1.3517 -8.4815 -1.2460
20 1 2.2550 -8.8444 -1.7365
21 6 0.5604 -7.5910 -2.2061
22 1 1.1706 -6.7372 -2.5005
23 6 -0.7181 -7.0991 -1.5226
24 6 -1.5696 -6.3249 -2.5301
25 6 -2.0159 -7.2593 -3.6559
26 6 -0.7857 -7.7583 -4.4212
27 6 0.1730 -8.3859 -3.4335
28 8 0.6180 -9.4928 -3.6204
29 1 -0.4850 0.8401 -0.0004
30 1 0.6246 -2.5571 -0.8896
31 1 0.6240 -2.5567 0.8903
32 1 2.8718 -3.6043 0.8905
33 1 2.8719 -3.6044 -0.8894
34 1 0.8533 -5.0451 -0.8886
35 1 0.8537 -5.0446 0.8914
36 1 0.1227 -7.8990 1.3566
37 1 1.7402 -8.3234 1.9932
38 1 0.0483 -10.3002 1.2573
39 1 1.7811 -10.4201 0.8019
40 1 -0.5779 -9.4402 -0.9030
41 1 0.7360 -10.5712 -1.3652
42 1 -0.4550 -6.4457 -0.6908
43 1 -1.2831 -7.9534 -1.1495
44 1 -0.9821 -5.5079 -2.9489
45 1 -2.4471 -5.9192 -2.0267
46 1 -2.5502 -8.1097 -3.2323
47 1 -2.6735 -6.7193 -4.3372
48 1 -1.0898 -8.5012 -5.1587
49 1 -0.3002 -6.9199 -4.9205
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183958903.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:43
Heat of formation + Delta-G solvation = -133.265874 kcal
Electronic energy + Delta-G solvation = -29986.677052 eV
Core-core repulsion = 26039.825587 eV
Total energy + Delta-G solvation = -3946.851465 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.165 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.83183 -38.37334 -36.98247 -36.43456 -35.78030 -34.71958 -32.35047 -32.12720
-31.12465 -29.60689 -27.87811 -27.36290 -24.01959 -23.59339 -22.32443 -21.71018
-21.45541 -20.52851 -19.11241 -18.56561 -17.57130 -16.89937 -16.48082 -15.99056
-15.82777 -15.54631 -15.51407 -15.00043 -14.60722 -14.51736 -14.35788 -14.24948
-13.88308 -13.55823 -13.29143 -12.85965 -12.74630 -12.63853 -12.52087 -12.27874
-12.03728 -11.90889 -11.88469 -11.78278 -11.63437 -11.41670 -11.33081 -11.26428
-11.15878 -11.00082 -10.93392 -10.84794 -10.82091 -10.51711 -10.45099 -9.99144
-9.70576 -9.46050 -9.23449 -8.90569 -8.43728 -6.08965 -4.11892 0.36366
1.75578 2.68589 3.28219 3.34621 3.38748 3.76732 3.93981 4.10295
4.27619 4.31909 4.40038 4.48621 4.53333 4.66090 4.71206 4.81590
4.90692 4.96486 5.08682 5.12529 5.13395 5.21006 5.27666 5.28727
5.31178 5.44735 5.53847 5.61670 5.64517 5.65173 5.67461 5.74546
5.79968 5.83251 5.88686 5.94165 5.97128 6.09380 6.15125 6.20232
6.33753 6.40140 6.82619 7.27962 7.52905 7.62741 7.88967 8.29516
8.94152 9.53077 11.02134
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012342 B = 0.003523 C = 0.003011
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2268.165478 B = 7945.863700 C = 9296.618675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.059 3.941
3 Si 0.893 3.107
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.273 1.273
7 C -0.527 4.527
8 H 0.058 0.942
9 C 0.033 3.967
10 C -0.105 4.105
11 C -0.613 4.613
12 S 2.608 3.392
13 O -0.957 6.957
14 O -0.956 6.956
15 N -1.012 6.012
16 C 0.113 3.887
17 C -0.128 4.128
18 C -0.125 4.125
19 C 0.169 3.831
20 H 0.087 0.913
21 C -0.168 4.168
22 H 0.112 0.888
23 C -0.118 4.118
24 C -0.131 4.131
25 C -0.112 4.112
26 C -0.170 4.170
27 C 0.376 3.624
28 O -0.452 6.452
29 H 0.261 0.739
30 H 0.020 0.980
31 H 0.021 0.979
32 H 0.065 0.935
33 H 0.066 0.934
34 H 0.129 0.871
35 H 0.129 0.871
36 H 0.068 0.932
37 H 0.084 0.916
38 H 0.081 0.919
39 H 0.075 0.925
40 H 0.078 0.922
41 H 0.085 0.915
42 H 0.080 0.920
43 H 0.077 0.923
44 H 0.074 0.926
45 H 0.076 0.924
46 H 0.066 0.934
47 H 0.075 0.925
48 H 0.088 0.912
49 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.093 -20.160 -3.587 21.364
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.142 4.142
3 Si 0.721 3.279
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.197 1.197
7 C -0.565 4.565
8 H 0.076 0.924
9 C -0.005 4.005
10 C -0.144 4.144
11 C -0.745 4.745
12 S 2.706 3.294
13 O -0.948 6.948
14 O -0.947 6.947
15 N -0.848 5.848
16 C -0.012 4.012
17 C -0.167 4.167
18 C -0.164 4.164
19 C 0.063 3.937
20 H 0.105 0.895
21 C -0.189 4.189
22 H 0.130 0.870
23 C -0.155 4.155
24 C -0.169 4.169
25 C -0.150 4.150
26 C -0.208 4.208
27 C 0.251 3.749
28 O -0.324 6.324
29 H 0.071 0.929
30 H 0.039 0.961
31 H 0.039 0.961
32 H 0.083 0.917
33 H 0.084 0.916
34 H 0.147 0.853
35 H 0.147 0.853
36 H 0.086 0.914
37 H 0.102 0.898
38 H 0.100 0.900
39 H 0.094 0.906
40 H 0.096 0.904
41 H 0.104 0.896
42 H 0.099 0.901
43 H 0.095 0.905
44 H 0.093 0.907
45 H 0.095 0.905
46 H 0.084 0.916
47 H 0.094 0.906
48 H 0.107 0.893
49 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -4.980 -20.592 -3.637 21.496
hybrid contribution -0.298 1.444 -0.070 1.476
sum -5.278 -19.148 -3.707 20.205
Atomic orbital electron populations
1.69954 1.06063 1.26769 1.50607 1.25000 0.94875 0.99314 0.95055
0.86572 0.79930 0.83216 0.78214 1.20560 1.21155 1.19730 1.21251
0.93261 0.90895 1.51085 0.92404 1.19046 0.93451 0.90348 0.97703
1.21507 0.99401 0.91597 1.01941 1.30752 1.16530 1.15984 1.11244
1.05166 0.75446 0.74521 0.74233 1.93560 1.70993 1.85655 1.44578
1.93560 1.69158 1.85895 1.46054 1.58917 1.68902 1.43428 1.13520
1.22116 0.97808 0.92915 0.88320 1.22749 1.02240 0.95811 0.95855
1.22792 0.99766 0.97768 0.96077 1.21048 0.97782 0.90529 0.84382
0.89495 1.22507 0.99321 1.00999 0.96029 0.87036 1.21779 0.94112
1.00880 0.98720 1.21650 1.00546 0.98431 0.96249 1.21519 0.96174
0.99613 0.97656 1.22335 0.97133 1.02875 0.98470 1.24581 0.78157
0.86073 0.86113 1.90384 1.47649 1.19906 1.74481 0.92907 0.96117
0.96115 0.91667 0.91579 0.85268 0.85303 0.91390 0.89764 0.90038
0.90583 0.90379 0.89648 0.90140 0.90497 0.90711 0.90542 0.91561
0.90596 0.89299 0.88062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16
2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16
4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16
7 C -0.53 -14.56 9.11 -34.44 -0.31 -14.87 16
8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16
9 C 0.03 0.81 4.97 -27.88 -0.14 0.67 16
10 C -0.10 -2.08 5.16 -26.73 -0.14 -2.22 16
11 C -0.61 -9.22 5.24 37.16 0.19 -9.02 16
12 S 2.61 39.95 5.26 -107.50 -0.57 39.38 16
13 O -0.96 -17.34 17.43 -57.54 -1.00 -18.34 16
14 O -0.96 -17.06 16.91 -57.54 -0.97 -18.03 16
15 N -1.01 -11.95 2.71 -104.17 -0.28 -12.24 16
16 C 0.11 1.06 7.14 -2.35 -0.02 1.04 16
17 C -0.13 -0.99 7.08 -24.58 -0.17 -1.16 16
18 C -0.13 -1.10 5.12 -24.90 -0.13 -1.22 16
19 C 0.17 1.88 2.11 -66.95 -0.14 1.74 16
20 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16
21 C -0.17 -1.74 2.19 -91.44 -0.20 -1.94 16
22 H 0.11 1.26 7.23 -51.93 -0.38 0.88 16
23 C -0.12 -1.02 4.48 -26.71 -0.12 -1.13 16
24 C -0.13 -1.07 5.81 -26.78 -0.16 -1.22 16
25 C -0.11 -0.77 5.94 -26.63 -0.16 -0.93 16
26 C -0.17 -1.34 6.17 -27.48 -0.17 -1.51 16
27 C 0.38 3.86 6.20 -28.47 -0.18 3.69 16
28 O -0.45 -5.73 15.76 6.00 0.09 -5.63 16
29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16
30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16
34 H 0.13 1.70 6.38 -51.92 -0.33 1.37 16
35 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16
36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
37 H 0.08 0.83 7.74 -51.93 -0.40 0.42 16
38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16
40 H 0.08 0.60 5.60 -51.93 -0.29 0.30 16
41 H 0.08 0.79 7.68 -51.93 -0.40 0.39 16
42 H 0.08 0.72 5.55 -51.93 -0.29 0.44 16
43 H 0.08 0.56 5.85 -51.93 -0.30 0.26 16
44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
45 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16
46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
47 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16
48 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16
49 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16
LS Contribution 388.50 15.07 5.85 5.85
Total: -1.00 -34.42 388.50 -11.36 -45.78
By element:
Atomic # 1 Polarization: 7.02 SS G_CDS: -8.27 Total: -1.25 kcal
Atomic # 6 Polarization: -24.61 SS G_CDS: -1.93 Total: -26.54 kcal
Atomic # 7 Polarization: -37.93 SS G_CDS: 0.45 Total: -37.48 kcal
Atomic # 8 Polarization: -40.12 SS G_CDS: -1.88 Total: -42.00 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal
Atomic # 16 Polarization: 39.95 SS G_CDS: -0.57 Total: 39.38 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -34.42 -11.36 -45.78 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183958903.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.489 kcal
(2) G-P(sol) polarization free energy of solvation -34.417 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.359 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.777 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.266 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds