Wall clock time and date at job start Sat Apr 11 2020 06:52:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86801 * 120.00061 * 2 1
4 4 H 1.48501 * 109.46556 * 269.99489 * 3 2 1
5 5 H 1.48490 * 109.47223 * 29.99464 * 3 2 1
6 6 H 1.48504 * 109.47122 * 149.99987 * 3 2 1
7 7 C 1.37874 * 119.99904 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00220 * 179.97438 * 7 2 1
9 9 C 1.50701 * 119.99959 * 0.02562 * 7 2 1
10 10 C 1.53008 * 109.47233 * 179.97438 * 9 7 2
11 11 C 1.52997 * 109.47309 * 179.97438 * 10 9 7
12 12 S 1.81402 * 109.47166 * 180.02562 * 11 10 9
13 13 O 1.42094 * 110.54187 * 69.86162 * 12 11 10
14 14 O 1.42099 * 110.53776 * 293.11212 * 12 11 10
15 15 N 1.65599 * 104.44680 * 181.48736 * 12 11 10
16 16 C 1.47743 * 125.82227 * 276.50296 * 15 12 11
17 17 C 1.54915 * 104.83769 * 204.25203 * 16 15 12
18 18 C 1.55154 * 101.58426 * 322.90235 * 17 16 15
19 19 C 1.47022 * 125.64709 * 96.50562 * 15 12 11
20 20 H 1.09004 * 109.88596 * 59.32240 * 19 15 12
21 21 C 1.53003 * 109.88266 * 298.31188 * 19 15 12
22 22 H 1.08996 * 109.62495 * 60.70584 * 21 19 15
23 23 C 1.53092 * 109.79828 * 300.18374 * 21 19 15
24 24 C 1.52955 * 109.47841 * 185.52735 * 23 21 19
25 25 C 1.52956 * 109.75936 * 63.64120 * 24 23 21
26 26 C 1.53235 * 109.40505 * 296.43307 * 25 24 23
27 27 C 1.51271 * 109.62366 * 181.08741 * 21 19 15
28 28 O 1.20755 * 120.85300 * 351.22571 * 27 21 19
29 29 H 0.97002 * 119.99723 * 0.02562 * 1 2 3
30 30 H 1.08999 * 109.47459 * 59.99906 * 9 7 2
31 31 H 1.09001 * 109.47295 * 299.99517 * 9 7 2
32 32 H 1.08999 * 109.46444 * 59.99935 * 10 9 7
33 33 H 1.09001 * 109.47116 * 300.00277 * 10 9 7
34 34 H 1.09003 * 109.46906 * 59.99993 * 11 10 9
35 35 H 1.09009 * 109.47237 * 300.00548 * 11 10 9
36 36 H 1.08999 * 110.43501 * 85.37459 * 16 15 12
37 37 H 1.09000 * 110.38558 * 323.10226 * 16 15 12
38 38 H 1.09004 * 111.00216 * 204.82923 * 17 16 15
39 39 H 1.08998 * 111.00672 * 80.98142 * 17 16 15
40 40 H 1.08994 * 110.72035 * 277.14130 * 18 17 16
41 41 H 1.09002 * 110.72190 * 153.86508 * 18 17 16
42 42 H 1.09001 * 109.38000 * 65.56095 * 23 21 19
43 43 H 1.09005 * 109.50571 * 305.56906 * 23 21 19
44 44 H 1.08999 * 109.41693 * 303.56954 * 24 23 21
45 45 H 1.09004 * 109.41135 * 183.70848 * 24 23 21
46 46 H 1.08999 * 109.48709 * 56.41357 * 25 24 23
47 47 H 1.09002 * 109.48250 * 176.45816 * 25 24 23
48 48 H 1.09003 * 109.62491 * 174.33928 * 26 25 24
49 49 H 1.08995 * 109.62503 * 294.91733 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0462 -1.4001
5 1 1.4467 2.6527 0.6999
6 1 3.5468 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4991 0.0005
10 6 2.2452 -3.6621 0.0005
11 6 1.4802 -4.9871 0.0012
12 16 2.6590 -6.3659 0.0019
13 8 3.3311 -6.4466 1.2513
14 8 3.3800 -6.4061 -1.2219
15 7 1.7090 -7.7217 -0.0390
16 6 1.0783 -8.3712 1.1285
17 6 0.8627 -9.8429 0.6953
18 6 0.4814 -9.6751 -0.7992
19 6 1.3517 -8.4815 -1.2460
20 1 2.2550 -8.8444 -1.7365
21 6 0.5604 -7.5910 -2.2061
22 1 1.1706 -6.7372 -2.5005
23 6 -0.7181 -7.0991 -1.5226
24 6 -1.5696 -6.3249 -2.5301
25 6 -2.0159 -7.2593 -3.6559
26 6 -0.7857 -7.7583 -4.4212
27 6 0.1730 -8.3859 -3.4335
28 8 0.6180 -9.4928 -3.6204
29 1 -0.4850 0.8401 -0.0004
30 1 0.6246 -2.5571 -0.8896
31 1 0.6240 -2.5567 0.8903
32 1 2.8718 -3.6043 0.8905
33 1 2.8719 -3.6044 -0.8894
34 1 0.8533 -5.0451 -0.8886
35 1 0.8537 -5.0446 0.8914
36 1 0.1227 -7.8990 1.3566
37 1 1.7402 -8.3234 1.9932
38 1 0.0483 -10.3002 1.2573
39 1 1.7811 -10.4201 0.8019
40 1 -0.5779 -9.4402 -0.9030
41 1 0.7360 -10.5712 -1.3652
42 1 -0.4550 -6.4457 -0.6908
43 1 -1.2831 -7.9534 -1.1495
44 1 -0.9821 -5.5079 -2.9489
45 1 -2.4471 -5.9192 -2.0267
46 1 -2.5502 -8.1097 -3.2323
47 1 -2.6735 -6.7193 -4.3372
48 1 -1.0898 -8.5012 -5.1587
49 1 -0.3002 -6.9199 -4.9205
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183958903.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:42
Heat of formation + Delta-G solvation = -154.847958 kcal
Electronic energy + Delta-G solvation = -29987.612921 eV
Core-core repulsion = 26039.825587 eV
Total energy + Delta-G solvation = -3947.787334 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.165 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.63463 -39.21034 -38.31763 -37.18033 -37.12992 -36.46874 -34.18677 -32.95567
-31.96985 -30.33971 -29.63952 -28.13007 -25.67545 -24.52576 -23.14508 -22.57660
-22.32343 -21.97772 -19.99283 -19.62247 -18.75226 -18.47498 -17.70209 -17.22482
-16.87134 -16.60525 -16.45893 -16.33366 -15.89918 -15.67298 -15.31789 -15.06217
-14.77274 -14.50249 -14.38587 -14.07363 -13.95568 -13.66541 -13.54711 -13.47488
-13.30006 -13.26094 -13.18323 -13.01635 -12.77301 -12.69459 -12.59184 -12.50944
-12.19476 -12.07331 -12.04066 -11.79163 -11.76455 -11.67591 -11.48592 -11.37956
-11.20074 -11.12003 -10.56102 -10.43174 -9.89713 -8.21925 -6.32158 -0.88238
0.94817 1.40657 1.40957 1.52114 1.58026 2.40188 2.71640 2.93667
3.04059 3.11947 3.49639 3.51307 3.68679 3.73701 3.83516 3.85847
4.02045 4.08760 4.14694 4.24284 4.27018 4.37259 4.45650 4.47183
4.58386 4.60125 4.64305 4.75056 4.83741 4.89748 4.94007 4.98852
5.00078 5.02954 5.08068 5.10289 5.12160 5.20932 5.26654 5.31454
5.40526 5.43726 5.46192 5.52678 5.64343 5.80218 6.20947 6.48443
6.82617 7.36949 8.89198
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012342 B = 0.003523 C = 0.003011
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2268.165478 B = 7945.863700 C = 9296.618675
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.926 5.926
2 C 0.008 3.992
3 Si 0.958 3.042
4 H -0.272 1.272
5 H -0.280 1.280
6 H -0.267 1.267
7 C -0.553 4.553
8 H 0.057 0.943
9 C 0.036 3.964
10 C -0.105 4.105
11 C -0.607 4.607
12 S 2.626 3.374
13 O -0.987 6.987
14 O -0.987 6.987
15 N -1.006 6.006
16 C 0.102 3.898
17 C -0.120 4.120
18 C -0.118 4.118
19 C 0.163 3.837
20 H 0.061 0.939
21 C -0.172 4.172
22 H 0.097 0.903
23 C -0.116 4.116
24 C -0.134 4.134
25 C -0.106 4.106
26 C -0.168 4.168
27 C 0.379 3.621
28 O -0.480 6.480
29 H 0.265 0.735
30 H 0.007 0.993
31 H 0.005 0.995
32 H 0.062 0.938
33 H 0.064 0.936
34 H 0.148 0.852
35 H 0.151 0.849
36 H 0.094 0.906
37 H 0.078 0.922
38 H 0.111 0.889
39 H 0.070 0.930
40 H 0.095 0.905
41 H 0.080 0.920
42 H 0.077 0.923
43 H 0.096 0.904
44 H 0.061 0.939
45 H 0.083 0.917
46 H 0.077 0.923
47 H 0.088 0.912
48 H 0.097 0.903
49 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.567 -20.748 -3.393 22.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.191 4.191
3 Si 0.783 3.217
4 H -0.198 1.198
5 H -0.205 1.205
6 H -0.192 1.192
7 C -0.592 4.592
8 H 0.075 0.925
9 C -0.002 4.002
10 C -0.144 4.144
11 C -0.738 4.738
12 S 2.725 3.275
13 O -0.977 6.977
14 O -0.977 6.977
15 N -0.844 5.844
16 C -0.022 4.022
17 C -0.158 4.158
18 C -0.157 4.157
19 C 0.057 3.943
20 H 0.079 0.921
21 C -0.193 4.193
22 H 0.115 0.885
23 C -0.154 4.154
24 C -0.171 4.171
25 C -0.143 4.143
26 C -0.206 4.206
27 C 0.255 3.745
28 O -0.354 6.354
29 H 0.074 0.926
30 H 0.026 0.974
31 H 0.024 0.976
32 H 0.081 0.919
33 H 0.082 0.918
34 H 0.166 0.834
35 H 0.169 0.831
36 H 0.113 0.887
37 H 0.097 0.903
38 H 0.130 0.870
39 H 0.089 0.911
40 H 0.114 0.886
41 H 0.099 0.901
42 H 0.095 0.905
43 H 0.115 0.885
44 H 0.080 0.920
45 H 0.102 0.898
46 H 0.096 0.904
47 H 0.107 0.893
48 H 0.115 0.885
49 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -6.444 -21.171 -3.439 22.395
hybrid contribution 0.152 1.580 -0.143 1.594
sum -6.292 -19.591 -3.582 20.886
Atomic orbital electron populations
1.70052 1.07427 1.27826 1.51259 1.25839 0.95773 1.02882 0.94579
0.85556 0.78750 0.78902 0.78539 1.19767 1.20484 1.19165 1.21720
0.93628 0.92630 1.51175 0.92509 1.18920 0.93812 0.91293 0.96199
1.21316 0.98762 0.92492 1.01836 1.30661 1.16473 1.13305 1.13359
1.04316 0.75354 0.74963 0.72880 1.93519 1.72200 1.86332 1.45689
1.93516 1.70539 1.86543 1.47138 1.58575 1.68748 1.42116 1.15001
1.22466 0.98636 0.94055 0.87062 1.22765 1.03149 0.94676 0.95254
1.22769 1.00104 0.96228 0.96593 1.21141 0.97502 0.91545 0.84082
0.92055 1.22541 0.99986 1.00427 0.96332 0.88459 1.21820 0.93377
1.01582 0.98577 1.21674 1.00489 0.98326 0.96625 1.21508 0.95709
0.99798 0.97320 1.22368 0.97017 1.03078 0.98117 1.24884 0.77865
0.85517 0.86231 1.90379 1.48816 1.21177 1.75061 0.92628 0.97413
0.97616 0.91896 0.91778 0.83425 0.83109 0.88738 0.90348 0.87048
0.91127 0.88634 0.90142 0.90481 0.88541 0.91999 0.89838 0.90416
0.89334 0.88458 0.87571
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.95 13.29 21.45 0.28 -53.67 16
2 C 0.01 0.44 5.46 84.65 0.46 0.90 16
3 Si 0.96 43.49 29.54 68.60 2.03 45.51 16
4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16
6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
7 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16
8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16
9 C 0.04 1.80 4.97 29.85 0.15 1.95 16
10 C -0.10 -4.19 5.16 30.60 0.16 -4.03 16
11 C -0.61 -17.91 5.24 71.98 0.38 -17.53 16
12 S 2.63 80.59 5.26 -56.49 -0.30 80.30 16
13 O -0.99 -35.88 17.43 -127.65 -2.23 -38.11 16
14 O -0.99 -36.10 16.91 -127.65 -2.16 -38.26 16
15 N -1.01 -22.97 2.71 -483.49 -1.31 -24.29 16
16 C 0.10 1.69 7.14 86.80 0.62 2.31 16
17 C -0.12 -1.55 7.08 31.99 0.23 -1.32 16
18 C -0.12 -1.84 5.12 31.78 0.16 -1.68 16
19 C 0.16 3.54 2.11 45.34 0.10 3.64 16
20 H 0.06 1.63 8.05 -2.38 -0.02 1.61 16
21 C -0.17 -3.45 2.19 -11.33 -0.02 -3.47 16
22 H 0.10 2.22 7.23 -2.39 -0.02 2.21 16
23 C -0.12 -1.77 4.48 30.61 0.14 -1.64 16
24 C -0.13 -1.92 5.81 30.56 0.18 -1.74 16
25 C -0.11 -1.19 5.94 30.66 0.18 -1.01 16
26 C -0.17 -2.37 6.17 30.11 0.19 -2.19 16
27 C 0.38 7.46 6.20 29.47 0.18 7.64 16
28 O -0.48 -11.98 15.76 -1.44 -0.02 -12.01 16
29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16
30 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16
31 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16
32 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16
33 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16
34 H 0.15 3.79 6.38 -2.39 -0.02 3.78 16
35 H 0.15 3.77 8.14 -2.39 -0.02 3.75 16
36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16
37 H 0.08 1.42 7.74 -2.39 -0.02 1.40 16
38 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16
39 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
40 H 0.10 1.15 5.60 -2.39 -0.01 1.14 16
41 H 0.08 1.38 7.68 -2.39 -0.02 1.36 16
42 H 0.08 1.22 5.55 -2.39 -0.01 1.21 16
43 H 0.10 1.09 5.85 -2.38 -0.01 1.07 16
44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16
45 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16
46 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16
47 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16
48 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16
49 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16
Total: -1.00 -74.80 388.50 0.55 -74.25
By element:
Atomic # 1 Polarization: 14.19 SS G_CDS: 0.93 Total: 15.12 kcal
Atomic # 6 Polarization: -52.17 SS G_CDS: 3.32 Total: -48.85 kcal
Atomic # 7 Polarization: -76.93 SS G_CDS: -1.03 Total: -77.95 kcal
Atomic # 8 Polarization: -83.97 SS G_CDS: -4.41 Total: -88.38 kcal
Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal
Atomic # 16 Polarization: 80.59 SS G_CDS: -0.30 Total: 80.30 kcal
Total: -74.80 0.55 -74.25 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183958903.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -80.595 kcal
(2) G-P(sol) polarization free energy of solvation -74.799 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.394 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.253 kcal
(6) G-S(sol) free energy of system = (1) + (5) -154.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds