Wall clock time and date at job start Sat Apr 11 2020 06:52:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86800 * 120.00159 * 2 1
4 4 H 1.48499 * 109.47052 * 270.00030 * 3 2 1
5 5 H 1.48499 * 109.46971 * 30.00137 * 3 2 1
6 6 H 1.48500 * 109.47081 * 149.99699 * 3 2 1
7 7 C 1.37875 * 119.99614 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99869 * 188.81770 * 7 2 1
9 9 C 1.50696 * 120.00187 * 8.54008 * 7 2 1
10 10 C 1.52996 * 115.55184 * 274.35631 * 9 7 2
11 11 O 1.45204 * 109.47212 * 301.03610 * 10 9 7
12 12 C 1.34231 * 116.99969 * 179.97438 * 11 10 9
13 13 O 1.20825 * 119.99875 * 0.02562 * 12 11 10
14 14 C 1.50700 * 120.00226 * 179.97438 * 12 11 10
15 15 H 1.09002 * 110.88422 * 56.11877 * 14 12 11
16 16 C 1.55156 * 111.00609 * 180.02562 * 14 12 11
17 17 C 1.54330 * 102.93899 * 153.57816 * 16 14 12
18 18 N 1.47023 * 107.27299 * 337.80465 * 17 16 14
19 19 C 1.34768 * 125.64692 * 178.92128 * 18 17 16
20 20 O 1.21555 * 119.99961 * 175.81223 * 19 18 17
21 21 C 1.47844 * 120.00213 * 355.80747 * 19 18 17
22 22 C 1.39573 * 120.14327 * 8.29526 * 21 19 18
23 23 C 1.37964 * 119.85257 * 179.78938 * 22 21 19
24 24 C 1.38355 * 120.14600 * 0.48193 * 23 22 21
25 25 C 1.38362 * 120.29146 * 359.74514 * 24 23 22
26 26 C 1.37963 * 120.14327 * 0.02562 * 25 24 23
27 27 C 1.47430 * 108.70299 * 358.94458 * 18 17 16
28 28 C 1.53005 * 117.49886 * 128.68961 * 9 7 2
29 29 C 1.53000 * 117.50086 * 60.02954 * 9 7 2
30 30 H 0.97002 * 119.99468 * 0.02562 * 1 2 3
31 31 H 1.09001 * 109.47260 * 61.03224 * 10 9 7
32 32 H 1.09004 * 109.47449 * 181.03697 * 10 9 7
33 33 H 1.08993 * 110.71713 * 271.93849 * 16 14 12
34 34 H 1.08998 * 110.71904 * 35.03983 * 16 14 12
35 35 H 1.09002 * 109.87867 * 97.22444 * 17 16 14
36 36 H 1.09001 * 109.87802 * 218.38923 * 17 16 14
37 37 H 1.08002 * 120.07342 * 359.97438 * 22 21 19
38 38 H 1.08001 * 119.92281 * 180.22975 * 23 22 21
39 39 H 1.07993 * 119.85723 * 179.72490 * 24 23 22
40 40 H 1.08003 * 119.92984 * 179.97438 * 25 24 23
41 41 H 1.08006 * 120.07240 * 179.97438 * 26 25 24
42 42 H 1.09002 * 110.36282 * 265.28798 * 27 18 17
43 43 H 1.08994 * 110.36900 * 142.96480 * 27 18 17
44 44 H 1.09000 * 117.49996 * 359.97438 * 28 9 7
45 45 H 1.08999 * 117.49858 * 145.01818 * 28 9 7
46 46 H 1.08997 * 117.50165 * 214.97968 * 29 9 7
47 47 H 1.09005 * 117.49267 * 359.97438 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 3.0749 -1.1997 0.1428
9 6 1.2635 -2.4918 -0.1949
10 6 0.6717 -3.1102 1.0732
11 8 1.7345 -3.3632 2.0297
12 6 1.3802 -3.9080 3.2043
13 8 0.2206 -4.1652 3.4256
14 6 2.4289 -4.1997 4.2465
15 1 2.9919 -3.2997 4.4938
16 6 1.7927 -4.8248 5.5160
17 6 2.9533 -5.6466 6.1154
18 7 3.9013 -5.9223 5.0259
19 6 5.0606 -6.5988 5.1460
20 8 5.7320 -6.8339 4.1603
21 6 5.5160 -7.0550 6.4765
22 6 4.6726 -6.9418 7.5828
23 6 5.1020 -7.3735 8.8208
24 6 6.3694 -7.9083 8.9690
25 6 7.2122 -8.0189 7.8773
26 6 6.7933 -7.5955 6.6329
27 6 3.3738 -5.3355 3.7805
28 6 1.7830 -3.4477 -1.2708
29 6 0.4834 -2.6715 -1.4988
30 1 -0.4849 0.8401 -0.0004
31 1 -0.0529 -2.4222 1.5089
32 1 0.1769 -4.0487 0.8231
33 1 1.4722 -4.0474 6.2094
34 1 0.9562 -5.4710 5.2499
35 1 3.4469 -5.0732 6.9001
36 1 2.5728 -6.5838 6.5217
37 1 3.6848 -6.5201 7.4693
38 1 4.4489 -7.2899 9.6769
39 1 6.7024 -8.2406 9.9411
40 1 8.2005 -8.4370 7.9997
41 1 7.4524 -7.6820 5.7816
42 1 2.8180 -6.0832 3.2147
43 1 4.1866 -4.9297 3.1783
44 1 2.6604 -3.1377 -1.8383
45 1 1.7028 -4.5169 -1.0752
46 1 -0.4512 -3.2305 -1.4532
47 1 0.5059 -1.8508 -2.2158
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000859946442.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:48
Heat of formation + Delta-G solvation = -41.920240 kcal
Electronic energy + Delta-G solvation = -29230.497060 eV
Core-core repulsion = 25152.162688 eV
Total energy + Delta-G solvation = -4078.334372 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.162 amu
Computer time = 1.34 seconds
Orbital eigenvalues (eV)
-40.97023 -39.93072 -38.63831 -37.53823 -36.69380 -35.30324 -32.82507 -31.98393
-31.32997 -31.11383 -29.57743 -26.97740 -25.54538 -25.17123 -23.45171 -22.82025
-22.21120 -21.18669 -20.20185 -19.88689 -19.28608 -17.70413 -17.55335 -16.79463
-16.71312 -16.15272 -15.91377 -15.62819 -15.21332 -14.74238 -14.72101 -14.54418
-14.29214 -13.91892 -13.85746 -13.70895 -13.29975 -13.17547 -12.93845 -12.66803
-12.40550 -12.11664 -12.10308 -11.72311 -11.69899 -11.39339 -11.11791 -11.02765
-10.93322 -10.85275 -10.56211 -10.33538 -10.22378 -10.03026 -9.89084 -9.59618
-9.36611 -9.34504 -8.92661 -8.85861 -8.48652 -8.22632 -6.09770 -4.13815
0.52977 0.99961 2.44890 2.60936 2.68968 3.24618 3.27800 3.34612
3.38055 3.53753 4.01407 4.19227 4.35570 4.37689 4.55275 4.60019
4.67452 4.73364 4.93802 4.96353 5.02633 5.04664 5.13171 5.19393
5.22868 5.41625 5.46745 5.57724 5.60822 5.62775 5.74185 5.82238
5.94054 5.95113 5.97744 6.06313 6.08581 6.20107 6.29490 6.48005
6.51679 6.62107 6.71265 6.99967 7.15812 7.19545 7.33280 7.42798
7.84925 7.89739 8.27346 8.39610 8.87945 9.51811 10.99865
Molecular weight = 343.16amu
Principal moments of inertia in cm(-1)
A = 0.017079 B = 0.002248 C = 0.002227
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1639.073375 B =12450.130535 C =12569.866779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.881 5.881
2 C 0.069 3.931
3 Si 0.892 3.108
4 H -0.280 1.280
5 H -0.287 1.287
6 H -0.272 1.272
7 C -0.488 4.488
8 H 0.064 0.936
9 C 0.037 3.963
10 C 0.115 3.885
11 O -0.329 6.329
12 C 0.466 3.534
13 O -0.518 6.518
14 C -0.098 4.098
15 H 0.123 0.877
16 C -0.120 4.120
17 C 0.090 3.910
18 N -0.613 5.613
19 C 0.573 3.427
20 O -0.531 6.531
21 C -0.129 4.129
22 C -0.124 4.124
23 C -0.129 4.129
24 C -0.098 4.098
25 C -0.130 4.130
26 C -0.061 4.061
27 C 0.123 3.877
28 C -0.206 4.206
29 C -0.147 4.147
30 H 0.261 0.739
31 H 0.077 0.923
32 H 0.039 0.961
33 H 0.094 0.906
34 H 0.096 0.904
35 H 0.084 0.916
36 H 0.085 0.915
37 H 0.161 0.839
38 H 0.128 0.872
39 H 0.125 0.875
40 H 0.129 0.871
41 H 0.136 0.864
42 H 0.077 0.923
43 H 0.098 0.902
44 H 0.081 0.919
45 H 0.066 0.934
46 H 0.065 0.935
47 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.966 -14.126 18.740 24.783
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.518 5.518
2 C -0.134 4.134
3 Si 0.719 3.281
4 H -0.206 1.206
5 H -0.213 1.213
6 H -0.197 1.197
7 C -0.526 4.526
8 H 0.082 0.918
9 C 0.036 3.964
10 C 0.042 3.958
11 O -0.244 6.244
12 C 0.308 3.692
13 O -0.408 6.408
14 C -0.118 4.118
15 H 0.141 0.859
16 C -0.157 4.157
17 C -0.032 4.032
18 N -0.347 5.347
19 C 0.363 3.637
20 O -0.408 6.408
21 C -0.132 4.132
22 C -0.141 4.141
23 C -0.147 4.147
24 C -0.116 4.116
25 C -0.148 4.148
26 C -0.080 4.080
27 C 0.000 4.000
28 C -0.243 4.243
29 C -0.184 4.184
30 H 0.071 0.929
31 H 0.095 0.905
32 H 0.057 0.943
33 H 0.113 0.887
34 H 0.114 0.886
35 H 0.102 0.898
36 H 0.102 0.898
37 H 0.177 0.823
38 H 0.146 0.854
39 H 0.143 0.857
40 H 0.147 0.853
41 H 0.153 0.847
42 H 0.095 0.905
43 H 0.116 0.884
44 H 0.100 0.900
45 H 0.085 0.915
46 H 0.084 0.916
47 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 7.881 -14.220 18.213 24.414
hybrid contribution 0.149 0.991 0.044 1.004
sum 8.030 -13.228 18.257 23.933
Atomic orbital electron populations
1.70008 1.05928 1.26716 1.49134 1.25009 0.94832 0.99085 0.94510
0.86597 0.80008 0.83248 0.78219 1.20554 1.21300 1.19716 1.20372
0.93589 0.88389 1.50237 0.91798 1.18776 0.98711 0.94395 0.84480
1.22912 0.87130 0.97554 0.88162 1.86542 1.42340 1.71137 1.24359
1.22906 0.88635 0.74528 0.83091 1.90620 1.20652 1.49993 1.79489
1.22155 0.95532 1.00757 0.93399 0.85936 1.22724 0.97449 1.00093
0.95483 1.22650 0.90101 0.99806 0.90686 1.48301 1.20444 1.55158
1.10801 1.17988 0.79313 0.77548 0.88808 1.90808 1.54748 1.56122
1.39170 1.19865 0.96226 1.04129 0.93007 1.22769 1.01530 0.97674
0.92174 1.21184 0.96515 0.99586 0.97447 1.21419 0.94012 0.97247
0.98902 1.21172 1.00288 1.00848 0.92476 1.21317 0.94509 0.94159
0.97966 1.22102 0.97408 0.93859 0.86587 1.23045 0.98169 0.95711
1.07361 1.22547 0.92784 1.01218 1.01863 0.92917 0.90472 0.94274
0.88726 0.88566 0.89822 0.89751 0.82272 0.85398 0.85688 0.85330
0.84658 0.90481 0.88364 0.89996 0.91510 0.91615 0.89445
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -24.57 12.97 55.43 0.72 -23.85 16
2 C 0.07 1.86 5.37 -17.82 -0.10 1.76 16
3 Si 0.89 20.89 29.55 -169.99 -5.02 15.87 16
4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
6 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16
7 C -0.49 -13.15 8.66 -34.44 -0.30 -13.45 16
8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16
9 C 0.04 0.90 1.64 -155.66 -0.26 0.65 16
10 C 0.12 2.67 5.31 37.16 0.20 2.87 16
11 O -0.33 -6.97 10.05 -39.26 -0.39 -7.36 16
12 C 0.47 8.29 7.27 36.01 0.26 8.56 16
13 O -0.52 -10.21 15.46 -18.75 -0.29 -10.50 16
14 C -0.10 -1.26 3.54 -89.62 -0.32 -1.58 16
15 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16
16 C -0.12 -1.14 6.09 -24.89 -0.15 -1.30 16
17 C 0.09 0.71 4.87 -3.06 -0.01 0.70 16
18 N -0.61 -7.06 3.33 -174.60 -0.58 -7.64 16
19 C 0.57 7.56 7.81 -12.33 -0.10 7.47 16
20 O -0.53 -8.93 16.67 5.32 0.09 -8.84 16
21 C -0.13 -1.37 5.87 -104.97 -0.62 -1.98 16
22 C -0.12 -0.98 8.59 -39.18 -0.34 -1.32 16
23 C -0.13 -0.85 10.03 -39.64 -0.40 -1.25 16
24 C -0.10 -0.63 10.04 -39.49 -0.40 -1.03 16
25 C -0.13 -0.96 10.03 -39.64 -0.40 -1.36 16
26 C -0.06 -0.59 9.59 -39.18 -0.38 -0.97 16
27 C 0.12 1.59 6.35 -2.52 -0.02 1.58 16
28 C -0.21 -4.45 9.94 -26.69 -0.27 -4.71 16
29 C -0.15 -3.37 9.49 -26.69 -0.25 -3.62 16
30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
31 H 0.08 1.97 8.13 -51.93 -0.42 1.55 16
32 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16
33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
34 H 0.10 1.01 7.38 -51.93 -0.38 0.63 16
35 H 0.08 0.52 6.78 -51.93 -0.35 0.17 16
36 H 0.08 0.52 6.69 -51.93 -0.35 0.18 16
37 H 0.16 0.96 2.79 -56.36 -0.16 0.81 16
38 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16
39 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16
40 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16
41 H 0.14 1.36 7.68 -52.48 -0.40 0.95 16
42 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16
43 H 0.10 1.39 8.08 -51.93 -0.42 0.97 16
44 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16
45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16
46 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16
47 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16
LS Contribution 392.66 15.07 5.92 5.92
Total: -1.00 -32.72 392.66 -10.06 -42.78
By element:
Atomic # 1 Polarization: 9.27 SS G_CDS: -6.67 Total: 2.60 kcal
Atomic # 6 Polarization: -5.15 SS G_CDS: -3.83 Total: -8.97 kcal
Atomic # 7 Polarization: -31.63 SS G_CDS: 0.14 Total: -31.50 kcal
Atomic # 8 Polarization: -26.10 SS G_CDS: -0.60 Total: -26.70 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -32.72 -10.06 -42.78 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859946442.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.864 kcal
(2) G-P(sol) polarization free energy of solvation -32.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.859 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.34 seconds