Wall clock time and date at job start Sat Apr 11 2020 06:52:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86800 * 120.00159 * 2 1
4 4 H 1.48499 * 109.47052 * 270.00030 * 3 2 1
5 5 H 1.48499 * 109.46971 * 30.00137 * 3 2 1
6 6 H 1.48500 * 109.47081 * 149.99699 * 3 2 1
7 7 C 1.37875 * 119.99614 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99869 * 188.81770 * 7 2 1
9 9 C 1.50696 * 120.00187 * 8.54008 * 7 2 1
10 10 C 1.52996 * 115.55184 * 274.35631 * 9 7 2
11 11 O 1.45204 * 109.47212 * 301.03610 * 10 9 7
12 12 C 1.34231 * 116.99969 * 179.97438 * 11 10 9
13 13 O 1.20825 * 119.99875 * 0.02562 * 12 11 10
14 14 C 1.50700 * 120.00226 * 179.97438 * 12 11 10
15 15 H 1.09002 * 110.88422 * 56.11877 * 14 12 11
16 16 C 1.55156 * 111.00609 * 180.02562 * 14 12 11
17 17 C 1.54330 * 102.93899 * 153.57816 * 16 14 12
18 18 N 1.47023 * 107.27299 * 337.80465 * 17 16 14
19 19 C 1.34768 * 125.64692 * 178.92128 * 18 17 16
20 20 O 1.21555 * 119.99961 * 175.81223 * 19 18 17
21 21 C 1.47844 * 120.00213 * 355.80747 * 19 18 17
22 22 C 1.39573 * 120.14327 * 8.29526 * 21 19 18
23 23 C 1.37964 * 119.85257 * 179.78938 * 22 21 19
24 24 C 1.38355 * 120.14600 * 0.48193 * 23 22 21
25 25 C 1.38362 * 120.29146 * 359.74514 * 24 23 22
26 26 C 1.37963 * 120.14327 * 0.02562 * 25 24 23
27 27 C 1.47430 * 108.70299 * 358.94458 * 18 17 16
28 28 C 1.53005 * 117.49886 * 128.68961 * 9 7 2
29 29 C 1.53000 * 117.50086 * 60.02954 * 9 7 2
30 30 H 0.97002 * 119.99468 * 0.02562 * 1 2 3
31 31 H 1.09001 * 109.47260 * 61.03224 * 10 9 7
32 32 H 1.09004 * 109.47449 * 181.03697 * 10 9 7
33 33 H 1.08993 * 110.71713 * 271.93849 * 16 14 12
34 34 H 1.08998 * 110.71904 * 35.03983 * 16 14 12
35 35 H 1.09002 * 109.87867 * 97.22444 * 17 16 14
36 36 H 1.09001 * 109.87802 * 218.38923 * 17 16 14
37 37 H 1.08002 * 120.07342 * 359.97438 * 22 21 19
38 38 H 1.08001 * 119.92281 * 180.22975 * 23 22 21
39 39 H 1.07993 * 119.85723 * 179.72490 * 24 23 22
40 40 H 1.08003 * 119.92984 * 179.97438 * 25 24 23
41 41 H 1.08006 * 120.07240 * 179.97438 * 26 25 24
42 42 H 1.09002 * 110.36282 * 265.28798 * 27 18 17
43 43 H 1.08994 * 110.36900 * 142.96480 * 27 18 17
44 44 H 1.09000 * 117.49996 * 359.97438 * 28 9 7
45 45 H 1.08999 * 117.49858 * 145.01818 * 28 9 7
46 46 H 1.08997 * 117.50165 * 214.97968 * 29 9 7
47 47 H 1.09005 * 117.49267 * 359.97438 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6526 0.7001
6 1 3.5467 1.4401 0.7001
7 6 2.0045 -1.1941 -0.0005
8 1 3.0749 -1.1997 0.1428
9 6 1.2635 -2.4918 -0.1949
10 6 0.6717 -3.1102 1.0732
11 8 1.7345 -3.3632 2.0297
12 6 1.3802 -3.9080 3.2043
13 8 0.2206 -4.1652 3.4256
14 6 2.4289 -4.1997 4.2465
15 1 2.9919 -3.2997 4.4938
16 6 1.7927 -4.8248 5.5160
17 6 2.9533 -5.6466 6.1154
18 7 3.9013 -5.9223 5.0259
19 6 5.0606 -6.5988 5.1460
20 8 5.7320 -6.8339 4.1603
21 6 5.5160 -7.0550 6.4765
22 6 4.6726 -6.9418 7.5828
23 6 5.1020 -7.3735 8.8208
24 6 6.3694 -7.9083 8.9690
25 6 7.2122 -8.0189 7.8773
26 6 6.7933 -7.5955 6.6329
27 6 3.3738 -5.3355 3.7805
28 6 1.7830 -3.4477 -1.2708
29 6 0.4834 -2.6715 -1.4988
30 1 -0.4849 0.8401 -0.0004
31 1 -0.0529 -2.4222 1.5089
32 1 0.1769 -4.0487 0.8231
33 1 1.4722 -4.0474 6.2094
34 1 0.9562 -5.4710 5.2499
35 1 3.4469 -5.0732 6.9001
36 1 2.5728 -6.5838 6.5217
37 1 3.6848 -6.5201 7.4693
38 1 4.4489 -7.2899 9.6769
39 1 6.7024 -8.2406 9.9411
40 1 8.2005 -8.4370 7.9997
41 1 7.4524 -7.6820 5.7816
42 1 2.8180 -6.0832 3.2147
43 1 4.1866 -4.9297 3.1783
44 1 2.6604 -3.1377 -1.8383
45 1 1.7028 -4.5169 -1.0752
46 1 -0.4512 -3.2305 -1.4532
47 1 0.5059 -1.8508 -2.2158
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000859946442.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:47
Heat of formation + Delta-G solvation = -59.185049 kcal
Electronic energy + Delta-G solvation = -29231.245718 eV
Core-core repulsion = 25152.162688 eV
Total energy + Delta-G solvation = -4079.083030 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.162 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.99027 -41.21645 -39.42922 -38.78807 -38.22467 -36.97041 -34.04036 -33.73337
-31.92920 -31.86324 -30.47527 -28.67750 -27.36943 -26.30735 -24.38032 -23.54789
-23.07512 -22.90143 -21.25997 -21.17059 -20.96677 -18.85916 -18.58294 -18.39081
-17.56339 -17.47975 -17.21958 -16.82425 -16.59273 -16.41328 -15.77727 -15.49763
-15.27176 -15.03324 -14.94122 -14.67126 -14.46877 -14.18625 -14.06064 -13.78984
-13.68795 -13.54534 -13.45047 -12.97584 -12.92894 -12.79895 -12.52990 -12.39173
-12.31690 -12.12503 -11.97161 -11.72334 -11.65623 -11.61595 -11.37907 -11.07246
-10.79439 -10.50460 -10.09479 -10.06488 -9.92623 -9.76358 -8.15491 -6.25327
-0.13530 0.44245 1.10297 1.40633 1.42508 1.51907 1.54671 1.77235
1.96426 2.41621 2.89653 3.12162 3.13614 3.27720 3.42998 3.55689
3.75572 3.91852 4.02256 4.04487 4.10742 4.12927 4.14592 4.26637
4.36813 4.44867 4.46936 4.51304 4.55355 4.58843 4.62838 4.65704
4.79081 4.83877 4.94320 4.96272 5.00756 5.08627 5.14608 5.16052
5.39139 5.41753 5.45501 5.53842 5.55487 5.68266 5.74310 5.98477
6.29581 6.34624 6.76652 6.79677 6.94011 7.42881 8.93602
Molecular weight = 343.16amu
Principal moments of inertia in cm(-1)
A = 0.017079 B = 0.002248 C = 0.002227
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1639.073375 B =12450.130535 C =12569.866779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.908 5.908
2 C 0.025 3.975
3 Si 0.951 3.049
4 H -0.275 1.275
5 H -0.284 1.284
6 H -0.269 1.269
7 C -0.503 4.503
8 H 0.053 0.947
9 C 0.004 3.996
10 C 0.128 3.872
11 O -0.345 6.345
12 C 0.464 3.536
13 O -0.537 6.537
14 C -0.091 4.091
15 H 0.136 0.864
16 C -0.111 4.111
17 C 0.089 3.911
18 N -0.611 5.611
19 C 0.567 3.433
20 O -0.584 6.584
21 C -0.154 4.154
22 C -0.121 4.121
23 C -0.127 4.127
24 C -0.092 4.092
25 C -0.133 4.133
26 C -0.083 4.083
27 C 0.124 3.876
28 C -0.182 4.182
29 C -0.147 4.147
30 H 0.261 0.739
31 H 0.045 0.955
32 H 0.050 0.950
33 H 0.118 0.882
34 H 0.087 0.913
35 H 0.113 0.887
36 H 0.112 0.888
37 H 0.179 0.821
38 H 0.161 0.839
39 H 0.156 0.844
40 H 0.148 0.852
41 H 0.117 0.883
42 H 0.068 0.932
43 H 0.079 0.921
44 H 0.084 0.916
45 H 0.090 0.910
46 H 0.079 0.921
47 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.331 -14.765 22.018 27.789
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.545 5.545
2 C -0.176 4.176
3 Si 0.776 3.224
4 H -0.200 1.200
5 H -0.210 1.210
6 H -0.193 1.193
7 C -0.540 4.540
8 H 0.071 0.929
9 C 0.004 3.996
10 C 0.054 3.946
11 O -0.260 6.260
12 C 0.307 3.693
13 O -0.427 6.427
14 C -0.111 4.111
15 H 0.154 0.846
16 C -0.149 4.149
17 C -0.031 4.031
18 N -0.344 5.344
19 C 0.359 3.641
20 O -0.466 6.466
21 C -0.157 4.157
22 C -0.139 4.139
23 C -0.145 4.145
24 C -0.110 4.110
25 C -0.151 4.151
26 C -0.102 4.102
27 C 0.001 3.999
28 C -0.219 4.219
29 C -0.184 4.184
30 H 0.070 0.930
31 H 0.063 0.937
32 H 0.068 0.932
33 H 0.137 0.863
34 H 0.106 0.894
35 H 0.130 0.870
36 H 0.129 0.871
37 H 0.196 0.804
38 H 0.179 0.821
39 H 0.173 0.827
40 H 0.165 0.835
41 H 0.135 0.865
42 H 0.086 0.914
43 H 0.097 0.903
44 H 0.102 0.898
45 H 0.108 0.892
46 H 0.098 0.902
47 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 8.230 -14.862 21.522 27.419
hybrid contribution 0.046 1.121 -0.899 1.437
sum 8.276 -13.741 20.624 26.128
Atomic orbital electron populations
1.70107 1.07066 1.27338 1.50016 1.25689 0.95583 1.02018 0.94275
0.85671 0.78855 0.79526 0.78322 1.20039 1.20955 1.19345 1.20581
0.93288 0.89925 1.50246 0.92895 1.18901 1.00225 0.94850 0.85663
1.22515 0.86919 0.97083 0.88086 1.86549 1.41877 1.72024 1.25589
1.23832 0.89589 0.73226 0.82618 1.90602 1.21909 1.50625 1.79609
1.22237 0.94417 1.01348 0.93062 0.84602 1.22787 0.97542 1.00534
0.94029 1.22963 0.88881 1.01319 0.89971 1.48340 1.20562 1.54327
1.11125 1.18553 0.79077 0.76992 0.89467 1.90766 1.56376 1.58388
1.41032 1.19784 0.97274 1.06263 0.92336 1.22973 1.01766 0.97357
0.91776 1.21612 0.96936 0.98173 0.97740 1.21853 0.93715 0.95749
0.99697 1.21427 1.01484 1.00372 0.91781 1.21362 0.94543 0.95591
0.98720 1.21922 0.96738 0.93799 0.87437 1.23046 0.97400 0.96469
1.04992 1.22487 0.94082 1.01205 1.00665 0.92955 0.93676 0.93152
0.86316 0.89441 0.86954 0.87076 0.80442 0.82134 0.82652 0.83462
0.86473 0.91357 0.90265 0.89785 0.89192 0.90242 0.91169
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -51.52 12.97 21.45 0.28 -51.25 16
2 C 0.02 1.36 5.37 84.65 0.45 1.81 16
3 Si 0.95 43.24 29.55 68.60 2.03 45.27 16
4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16
7 C -0.50 -27.57 8.66 25.60 0.22 -27.35 16
8 H 0.05 2.94 7.83 -2.91 -0.02 2.91 16
9 C 0.00 0.20 1.64 -52.93 -0.09 0.11 16
10 C 0.13 6.05 5.31 71.98 0.38 6.43 16
11 O -0.35 -14.94 10.05 -51.42 -0.52 -15.45 16
12 C 0.46 16.61 7.27 71.24 0.52 17.13 16
13 O -0.54 -21.25 15.46 21.97 0.34 -20.91 16
14 C -0.09 -2.26 3.54 -10.15 -0.04 -2.29 16
15 H 0.14 3.05 8.14 -2.39 -0.02 3.03 16
16 C -0.11 -1.85 6.09 31.78 0.19 -1.66 16
17 C 0.09 1.15 4.87 86.73 0.42 1.57 16
18 N -0.61 -13.67 3.33 -824.60 -2.74 -16.41 16
19 C 0.57 15.25 7.81 86.79 0.68 15.93 16
20 O -0.58 -20.96 16.67 -3.89 -0.06 -21.03 16
21 C -0.15 -3.13 5.87 -20.09 -0.12 -3.25 16
22 C -0.12 -1.54 8.59 22.53 0.19 -1.35 16
23 C -0.13 -1.12 10.03 22.23 0.22 -0.89 16
24 C -0.09 -0.84 10.04 22.33 0.22 -0.61 16
25 C -0.13 -1.72 10.03 22.23 0.22 -1.50 16
26 C -0.08 -1.63 9.59 22.53 0.22 -1.41 16
27 C 0.12 3.28 6.35 86.86 0.55 3.83 16
28 C -0.18 -7.79 9.94 30.62 0.30 -7.49 16
29 C -0.15 -6.79 9.49 30.62 0.29 -6.50 16
30 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16
31 H 0.04 2.39 8.13 -2.39 -0.02 2.37 16
32 H 0.05 2.21 8.10 -2.38 -0.02 2.19 16
33 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16
34 H 0.09 1.67 7.38 -2.39 -0.02 1.65 16
35 H 0.11 0.90 6.78 -2.39 -0.02 0.88 16
36 H 0.11 0.93 6.69 -2.39 -0.02 0.91 16
37 H 0.18 1.39 2.79 -6.55 -0.02 1.37 16
38 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16
39 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16
40 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16
41 H 0.12 2.60 7.68 -2.91 -0.02 2.57 16
42 H 0.07 1.90 8.03 -2.39 -0.02 1.88 16
43 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16
44 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16
45 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16
46 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16
47 H 0.07 3.45 8.14 -2.38 -0.02 3.43 16
Total: -1.00 -74.45 392.66 5.15 -69.30
By element:
Atomic # 1 Polarization: 17.00 SS G_CDS: 0.97 Total: 17.98 kcal
Atomic # 6 Polarization: -12.35 SS G_CDS: 4.86 Total: -7.50 kcal
Atomic # 7 Polarization: -65.20 SS G_CDS: -2.46 Total: -67.66 kcal
Atomic # 8 Polarization: -57.15 SS G_CDS: -0.24 Total: -57.39 kcal
Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal
Total: -74.45 5.15 -69.30 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000859946442.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.112 kcal
(2) G-P(sol) polarization free energy of solvation -74.446 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.334 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.185 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds