Wall clock time and date at job start Sat Apr 11 2020 06:53:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30877 * 1
3 3 Si 1.86796 * 120.00313 * 2 1
4 4 H 1.48504 * 109.47048 * 270.00150 * 3 2 1
5 5 H 1.48504 * 109.47001 * 29.99503 * 3 2 1
6 6 H 1.48494 * 109.47307 * 149.99522 * 3 2 1
7 7 C 1.39902 * 119.99819 * 179.97438 * 2 1 3
8 8 H 1.07997 * 119.99736 * 175.54897 * 7 2 1
9 9 C 1.41153 * 119.99871 * 355.54705 * 7 2 1
10 10 C 1.40865 * 120.16299 * 214.78163 * 9 7 2
11 11 C 1.36375 * 119.82732 * 180.02562 * 10 9 7
12 12 C 1.39485 * 120.17008 * 359.97438 * 11 10 9
13 13 N 1.39237 * 119.83051 * 180.02562 * 12 11 10
14 14 C 1.34773 * 120.00702 * 35.29219 * 13 12 11
15 15 O 1.21587 * 119.99377 * 355.71909 * 14 13 12
16 16 N 1.34774 * 120.00618 * 175.71925 * 14 13 12
17 17 C 1.47047 * 121.51665 * 359.97438 * 16 14 13
18 18 C 1.50420 * 109.26924 * 137.58789 * 17 16 14
19 19 O 1.21281 * 118.52961 * 192.15360 * 18 17 16
20 20 N 1.33731 * 122.86476 * 12.16660 * 18 17 16
21 21 C 1.45242 * 124.01712 * 355.42387 * 20 18 17
22 22 H 1.08999 * 107.05272 * 266.03468 * 21 20 18
23 23 C 1.52515 * 110.88734 * 147.64169 * 21 20 18
24 24 C 1.52971 * 110.91519 * 291.68184 * 23 21 20
25 25 C 1.53095 * 109.02322 * 301.02902 * 24 23 21
26 26 C 1.52868 * 109.15836 * 61.29778 * 25 24 23
27 27 C 1.47713 * 121.51967 * 180.02562 * 16 14 13
28 28 H 1.09004 * 110.25378 * 2.08759 * 27 16 14
29 29 C 1.39476 * 120.33235 * 0.29875 * 12 11 10
30 30 C 1.36379 * 120.16678 * 359.44034 * 29 12 11
31 31 H 0.97000 * 119.99755 * 0.02562 * 1 2 3
32 32 H 1.07998 * 120.08666 * 0.05314 * 10 9 7
33 33 H 1.08001 * 119.91706 * 180.02562 * 11 10 9
34 34 H 0.97005 * 119.99560 * 215.28581 * 13 12 11
35 35 H 1.09000 * 109.51360 * 257.54289 * 17 16 14
36 36 H 1.09008 * 109.50858 * 17.64426 * 17 16 14
37 37 H 0.97002 * 117.97602 * 175.45427 * 20 18 17
38 38 H 1.09007 * 108.58031 * 171.49643 * 23 21 20
39 39 H 1.08997 * 109.36229 * 52.37479 * 23 21 20
40 40 H 1.09004 * 109.54132 * 181.16827 * 24 23 21
41 41 H 1.09000 * 109.61708 * 60.94265 * 24 23 21
42 42 H 1.08990 * 109.52581 * 301.38595 * 25 24 23
43 43 H 1.09008 * 109.51675 * 181.19644 * 25 24 23
44 44 H 1.09003 * 109.39579 * 178.99021 * 26 25 24
45 45 H 1.08998 * 109.40284 * 59.26167 * 26 25 24
46 46 H 1.08000 * 119.92070 * 179.70557 * 29 12 11
47 47 H 1.08008 * 120.08628 * 180.25407 * 30 29 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3088 0.0000 0.0000
3 14 2.2428 1.6176 0.0000
4 1 2.4903 2.0463 -1.4001
5 1 1.4402 2.6527 0.7000
6 1 3.5403 1.4401 0.7001
7 6 2.0082 -1.2116 0.0005
8 1 3.0858 -1.2130 -0.0720
9 6 1.3056 -2.4321 0.0960
10 6 1.8650 -3.5178 0.7979
11 6 1.1804 -4.6940 0.8854
12 6 -0.0708 -4.8234 0.2825
13 7 -0.7638 -6.0274 0.3767
14 6 -0.6816 -6.7663 1.5009
15 8 0.0582 -6.4215 2.4021
16 7 -1.4192 -7.8872 1.6261
17 6 -2.3249 -8.3348 0.5577
18 6 -2.1971 -9.8241 0.3900
19 8 -2.6956 -10.3420 -0.5869
20 7 -1.5582 -10.6014 1.2709
21 6 -0.8391 -10.0973 2.4277
22 1 0.2040 -9.9856 2.1320
23 6 -0.9148 -11.0845 3.5878
24 6 -2.3396 -11.1733 4.1373
25 6 -2.7802 -9.7848 4.6083
26 6 -2.7705 -8.8250 3.4185
27 6 -1.3555 -8.7216 2.8434
28 1 -0.6837 -8.2717 3.5745
29 6 -0.6286 -3.7547 -0.4190
30 6 0.0417 -2.5706 -0.5105
31 1 -0.4850 0.8401 -0.0004
32 1 2.8332 -3.4188 1.2659
33 1 1.6077 -5.5272 1.4235
34 1 -1.3060 -6.3343 -0.3668
35 1 -3.3523 -8.0851 0.8228
36 1 -2.0592 -7.8392 -0.3762
37 1 -1.5760 -11.5607 1.1281
38 1 -0.2436 -10.7453 4.3769
39 1 -0.5976 -12.0695 3.2452
40 1 -2.3639 -11.8679 4.9770
41 1 -3.0125 -11.5235 3.3547
42 1 -2.0922 -9.4242 5.3729
43 1 -3.7873 -9.8429 5.0213
44 1 -3.1009 -7.8392 3.7460
45 1 -3.4480 -9.1953 2.6491
46 1 -1.5957 -3.8638 -0.8872
47 1 -0.3933 -1.7425 -1.0506
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000134544366.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:23
Heat of formation + Delta-G solvation = -35.043835 kcal
Electronic energy + Delta-G solvation = -30171.692103 eV
Core-core repulsion = 26125.948665 eV
Total energy + Delta-G solvation = -4045.743438 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.47813 -39.60610 -38.45135 -37.34654 -35.20865 -34.50926 -34.32420 -32.88876
-30.58409 -30.05256 -29.52304 -28.80526 -27.48377 -24.96683 -23.40082 -23.16051
-21.72850 -21.26026 -20.78827 -19.80170 -18.85792 -18.21314 -17.51109 -17.27442
-16.61413 -16.29384 -15.99169 -15.73534 -15.29392 -15.08157 -14.63254 -14.50624
-14.10207 -13.94545 -13.71758 -13.46411 -13.15283 -12.95341 -12.79942 -12.67950
-12.48226 -12.31280 -12.11894 -11.69673 -11.63872 -11.34578 -11.16967 -11.10182
-11.06830 -10.94014 -10.73871 -10.70685 -10.53960 -10.06316 -9.57321 -9.47311
-9.40468 -9.23753 -8.91729 -8.74182 -7.53415 -6.84511 -6.60235 -4.32630
2.25200 2.43173 2.67173 2.95626 3.09282 3.10361 3.13048 3.17221
3.54235 3.98955 4.02398 4.07053 4.21446 4.36369 4.42979 4.63703
4.70069 4.73103 4.82772 4.95351 4.99667 5.10932 5.14337 5.28739
5.39552 5.54933 5.61636 5.63613 5.67877 5.76950 5.87386 5.96415
6.07385 6.20444 6.39973 6.46555 6.73082 6.74868 6.95697 7.01503
7.11771 7.23475 7.34780 7.65878 7.80276 7.85526 7.93420 8.09115
8.29788 8.35777 8.64841 8.85430 8.94601 9.03376 10.30927
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.023523 B = 0.002350 C = 0.002266
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1190.057148 B =11912.157471 C =12356.249276
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.812 5.812
2 C 0.069 3.931
3 Si 0.915 3.085
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.263 1.263
7 C -0.461 4.461
8 H 0.075 0.925
9 C 0.099 3.901
10 C -0.204 4.204
11 C -0.085 4.085
12 C 0.019 3.981
13 N -0.664 5.664
14 C 0.705 3.295
15 O -0.568 6.568
16 N -0.638 5.638
17 C 0.098 3.902
18 C 0.517 3.483
19 O -0.549 6.549
20 N -0.707 5.707
21 C 0.131 3.869
22 H 0.075 0.925
23 C -0.125 4.125
24 C -0.120 4.120
25 C -0.117 4.117
26 C -0.130 4.130
27 C 0.154 3.846
28 H 0.123 0.877
29 C -0.121 4.121
30 C -0.141 4.141
31 H 0.277 0.723
32 H 0.096 0.904
33 H 0.108 0.892
34 H 0.391 0.609
35 H 0.104 0.896
36 H 0.112 0.888
37 H 0.398 0.602
38 H 0.084 0.916
39 H 0.073 0.927
40 H 0.068 0.932
41 H 0.064 0.936
42 H 0.069 0.931
43 H 0.068 0.932
44 H 0.075 0.925
45 H 0.063 0.937
46 H 0.090 0.910
47 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.537 -19.585 6.390 21.613
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.440 5.440
2 C -0.146 4.146
3 Si 0.740 3.260
4 H -0.196 1.196
5 H -0.203 1.203
6 H -0.188 1.188
7 C -0.492 4.492
8 H 0.094 0.906
9 C 0.097 3.903
10 C -0.224 4.224
11 C -0.105 4.105
12 C -0.073 4.073
13 N -0.311 5.311
14 C 0.407 3.593
15 O -0.445 6.445
16 N -0.378 5.378
17 C -0.029 4.029
18 C 0.303 3.697
19 O -0.427 6.427
20 N -0.359 5.359
21 C 0.025 3.975
22 H 0.093 0.907
23 C -0.164 4.164
24 C -0.157 4.157
25 C -0.155 4.155
26 C -0.169 4.169
27 C 0.050 3.950
28 H 0.141 0.859
29 C -0.141 4.141
30 C -0.161 4.161
31 H 0.088 0.912
32 H 0.114 0.886
33 H 0.126 0.874
34 H 0.226 0.774
35 H 0.122 0.878
36 H 0.130 0.870
37 H 0.235 0.765
38 H 0.103 0.897
39 H 0.092 0.908
40 H 0.087 0.913
41 H 0.082 0.918
42 H 0.088 0.912
43 H 0.086 0.914
44 H 0.094 0.906
45 H 0.082 0.918
46 H 0.109 0.891
47 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -6.420 -19.123 6.563 21.213
hybrid contribution -0.066 0.287 -0.351 0.458
sum -6.486 -18.836 6.212 20.868
Atomic orbital electron populations
1.69763 1.07263 1.28650 1.38311 1.25872 0.94940 1.01136 0.92607
0.86204 0.80240 0.80546 0.79018 1.19556 1.20335 1.18751 1.19486
0.94709 0.90224 1.44779 0.90650 1.17720 0.92298 0.92013 0.88316
1.20800 1.01202 0.94928 1.05503 1.20402 0.92690 0.97889 0.99515
1.17072 0.93833 0.84910 1.11533 1.42275 1.51509 1.22136 1.15142
1.15815 0.80782 0.79428 0.83259 1.90915 1.41844 1.70788 1.40914
1.47655 1.45884 1.26309 1.17985 1.21706 0.96852 0.91146 0.93174
1.20341 0.77396 0.89898 0.82112 1.90802 1.48174 1.74516 1.29159
1.45476 1.53973 1.10585 1.25861 1.21119 0.96280 0.94046 0.86066
0.90719 1.21729 0.98426 0.98931 0.97270 1.21547 0.95995 0.97400
1.00808 1.21504 1.02020 0.94519 0.97426 1.21889 0.96011 1.00803
0.98164 1.21448 0.98473 0.88065 0.86991 0.85874 1.20288 0.98376
0.93013 1.02472 1.21182 0.97310 0.95459 1.02102 0.91185 0.88620
0.87399 0.77416 0.87844 0.87017 0.76548 0.89698 0.90844 0.91325
0.91773 0.91187 0.91365 0.90645 0.91794 0.89136 0.85010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -21.14 10.60 55.55 0.59 -20.55 16
2 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16
3 Si 0.91 19.04 29.56 -169.99 -5.03 14.01 16
4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16
5 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16
6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16
7 C -0.46 -12.30 9.02 -37.85 -0.34 -12.64 16
8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16
9 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16
10 C -0.20 -5.15 9.74 -39.26 -0.38 -5.53 16
11 C -0.08 -2.02 8.61 -39.79 -0.34 -2.36 16
12 C 0.02 0.42 6.31 -83.57 -0.53 -0.11 16
13 N -0.66 -11.63 5.22 -14.10 -0.07 -11.71 16
14 C 0.70 12.08 8.18 -86.92 -0.71 11.37 16
15 O -0.57 -11.86 13.28 5.29 0.07 -11.79 16
16 N -0.64 -7.91 2.72 -172.08 -0.47 -8.38 16
17 C 0.10 1.03 5.59 -5.03 -0.03 1.00 16
18 C 0.52 5.78 7.22 -11.59 -0.08 5.70 16
19 O -0.55 -7.97 17.81 5.56 0.10 -7.87 16
20 N -0.71 -6.12 4.91 -55.35 -0.27 -6.40 16
21 C 0.13 1.05 3.04 -69.01 -0.21 0.84 16
22 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
23 C -0.12 -0.67 5.44 -26.99 -0.15 -0.82 16
24 C -0.12 -0.64 5.89 -26.70 -0.16 -0.79 16
25 C -0.12 -0.73 5.92 -26.75 -0.16 -0.89 16
26 C -0.13 -1.08 5.02 -26.75 -0.13 -1.22 16
27 C 0.15 1.55 2.75 -67.37 -0.19 1.37 16
28 H 0.12 1.43 7.13 -51.93 -0.37 1.06 16
29 C -0.12 -2.74 9.90 -39.79 -0.39 -3.14 16
30 C -0.14 -3.60 8.61 -39.26 -0.34 -3.94 16
31 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16
32 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16
33 H 0.11 2.53 6.22 -52.49 -0.33 2.21 16
34 H 0.39 5.56 6.45 -40.82 -0.26 5.30 16
35 H 0.10 0.93 7.57 -51.93 -0.39 0.53 16
36 H 0.11 1.14 5.93 -51.92 -0.31 0.83 16
37 H 0.40 2.96 8.63 -40.82 -0.35 2.60 16
38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16
40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
41 H 0.06 0.38 8.04 -51.93 -0.42 -0.04 16
42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
43 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16
44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
45 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16
46 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16
47 H 0.13 3.49 6.13 -52.48 -0.32 3.17 16
LS Contribution 369.31 15.07 5.57 5.57
Total: -1.00 -32.01 369.31 -10.77 -42.78
By element:
Atomic # 1 Polarization: 18.19 SS G_CDS: -6.43 Total: 11.76 kcal
Atomic # 6 Polarization: -2.60 SS G_CDS: -4.83 Total: -7.43 kcal
Atomic # 7 Polarization: -46.81 SS G_CDS: -0.23 Total: -47.03 kcal
Atomic # 8 Polarization: -19.82 SS G_CDS: 0.17 Total: -19.66 kcal
Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal
Total LS contribution 5.57 Total: 5.57 kcal
Total: -32.01 -10.77 -42.78 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000134544366.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.737 kcal
(2) G-P(sol) polarization free energy of solvation -32.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.269 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.044 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds