Wall clock time and date at job start Sat Apr 11 2020 06:53:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86805 * 120.00088 * 2 1
4 4 H 1.48494 * 109.46972 * 180.02562 * 3 2 1
5 5 H 1.48509 * 109.46875 * 300.00295 * 3 2 1
6 6 H 1.48499 * 109.46861 * 60.00001 * 3 2 1
7 7 C 1.37877 * 120.00291 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00611 * 179.97438 * 7 2 1
9 9 C 1.50708 * 119.99651 * 359.97438 * 7 2 1
10 10 C 1.50696 * 109.47025 * 180.02562 * 9 7 2
11 11 C 1.38286 * 119.93129 * 89.99417 * 10 9 7
12 12 C 1.38118 * 120.06986 * 180.02562 * 11 10 9
13 13 C 1.38867 * 119.92593 * 0.02562 * 12 11 10
14 14 N 1.39946 * 120.06676 * 179.97438 * 13 12 11
15 15 C 1.34776 * 120.00022 * 212.81003 * 14 13 12
16 16 O 1.21586 * 120.00092 * 7.61169 * 15 14 13
17 17 N 1.34785 * 119.99896 * 187.62048 * 15 14 13
18 18 C 1.46769 * 119.95840 * 174.46003 * 17 15 14
19 19 C 1.53891 * 109.20826 * 124.71231 * 18 17 15
20 20 N 1.47452 * 106.61129 * 47.25426 * 19 18 17
21 21 C 1.33694 * 127.56310 * 123.88444 * 20 19 18
22 22 O 1.21285 * 125.35237 * 18.51050 * 21 20 19
23 23 C 1.51520 * 109.29875 * 198.51153 * 21 20 19
24 24 C 1.54540 * 104.02676 * 335.19762 * 23 21 20
25 25 C 1.47792 * 121.30195 * 304.70717 * 20 19 18
26 26 H 1.09000 * 110.42157 * 296.85649 * 25 20 19
27 27 C 1.47186 * 119.96009 * 354.47652 * 17 15 14
28 28 C 1.38866 * 119.86303 * 0.25258 * 13 12 11
29 29 C 1.38109 * 119.93131 * 359.49204 * 28 13 12
30 30 H 0.97003 * 120.00294 * 359.97438 * 1 2 3
31 31 H 1.08993 * 109.47407 * 59.99653 * 9 7 2
32 32 H 1.08998 * 109.46546 * 299.99561 * 9 7 2
33 33 H 1.07993 * 119.96536 * 0.02562 * 11 10 9
34 34 H 1.07995 * 120.03390 * 180.02562 * 12 11 10
35 35 H 0.97008 * 120.00050 * 32.79885 * 14 13 12
36 36 H 1.08997 * 109.51759 * 244.63443 * 18 17 15
37 37 H 1.08999 * 109.51477 * 4.74313 * 18 17 15
38 38 H 1.09006 * 110.02051 * 166.52550 * 19 18 17
39 39 H 1.08992 * 110.02495 * 287.97673 * 19 18 17
40 40 H 1.08998 * 110.51821 * 216.56039 * 23 21 20
41 41 H 1.09007 * 110.63360 * 93.89393 * 23 21 20
42 42 H 1.09003 * 110.70647 * 262.81910 * 24 23 21
43 43 H 1.08999 * 110.70584 * 139.57811 * 24 23 21
44 44 H 1.09004 * 109.79189 * 355.78926 * 27 17 15
45 45 H 1.09003 * 109.79440 * 116.63505 * 27 17 15
46 46 H 1.08009 * 120.02998 * 179.72372 * 28 13 12
47 47 H 1.07999 * 119.96618 * 180.25352 * 29 28 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2126
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2303 -3.6446 -0.0005
11 6 2.6787 -4.1689 1.1979
12 6 3.5767 -5.2184 1.2012
13 6 4.0295 -5.7465 -0.0006
14 7 4.9397 -6.8095 -0.0007
15 6 5.8587 -6.9098 -0.9815
16 8 5.9892 -6.0082 -1.7867
17 7 6.6328 -8.0096 -1.0697
18 6 7.5471 -8.1730 -2.2062
19 6 8.9751 -8.3987 -1.6789
20 7 8.8770 -9.4205 -0.6203
21 6 9.5280 -10.5861 -0.5498
22 8 10.5332 -10.8670 -1.1676
23 6 8.8126 -11.5012 0.4232
24 6 8.0604 -10.5330 1.3640
25 6 7.9721 -9.2449 0.5349
26 1 8.2722 -8.3788 1.1248
27 6 6.5601 -9.0453 -0.0265
28 6 3.5816 -5.2139 -1.2023
29 6 2.6797 -4.1680 -1.1990
30 1 -0.4851 0.8400 0.0004
31 1 0.6240 -2.5567 -0.8902
32 1 0.6248 -2.5570 0.8897
33 1 2.3265 -3.7575 2.1322
34 1 3.9262 -5.6277 2.1375
35 1 4.9094 -7.4741 0.7053
36 1 7.2385 -9.0327 -2.8011
37 1 7.5239 -7.2754 -2.8241
38 1 9.6180 -8.7555 -2.4836
39 1 9.3716 -7.4710 -1.2665
40 1 9.5310 -12.0984 0.9847
41 1 8.1090 -12.1465 -0.1029
42 1 8.6291 -10.3646 2.2785
43 1 7.0648 -10.9133 1.5924
44 1 5.8889 -8.7215 0.7689
45 1 6.1990 -9.9790 -0.4579
46 1 3.9355 -5.6197 -2.1387
47 1 2.3279 -3.7561 -2.1333
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000932571767.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:47
Heat of formation + Delta-G solvation = -14.262605 kcal
Electronic energy + Delta-G solvation = -29227.685595 eV
Core-core repulsion = 25182.843299 eV
Total energy + Delta-G solvation = -4044.842296 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.56984 -40.41000 -38.56397 -37.48207 -35.54748 -35.04846 -33.69826 -32.88310
-30.55858 -30.29898 -30.18426 -28.77983 -26.57729 -25.22860 -24.15095 -22.94475
-22.40814 -21.86424 -20.96499 -20.14649 -19.53492 -18.47408 -17.41958 -17.00899
-16.55223 -16.29097 -16.14466 -15.93211 -15.44651 -15.05186 -14.90596 -14.56202
-14.25600 -14.22149 -14.07464 -13.68808 -13.59688 -13.21580 -12.98643 -12.84505
-12.72162 -12.59525 -12.21157 -12.00806 -11.95229 -11.89252 -11.58579 -11.45012
-11.24281 -10.79983 -10.59865 -10.39932 -10.27866 -10.26725 -9.87354 -9.70715
-9.50304 -9.26479 -8.79187 -8.41223 -8.30000 -7.37052 -6.02487 -4.06083
1.88962 2.04370 2.06807 2.13967 2.56813 3.02437 3.30967 3.38638
3.44785 3.45400 3.73457 3.92101 3.99979 4.31497 4.38069 4.39252
4.51587 4.54118 4.58308 4.67480 4.83249 4.94414 5.05783 5.16435
5.23925 5.25619 5.31502 5.33120 5.39826 5.45179 5.54774 5.83066
5.93576 5.94941 6.03597 6.14643 6.19387 6.41923 6.63954 6.66193
6.90680 6.92788 7.16333 7.20907 7.52074 7.66297 7.68527 7.71350
7.86862 7.93795 8.33962 8.36410 8.99808 9.57835 11.07044
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.025022 B = 0.001982 C = 0.001931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1118.762909 B =14126.448746 C =14498.151824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.057 3.943
3 Si 0.894 3.106
4 H -0.272 1.272
5 H -0.283 1.283
6 H -0.284 1.284
7 C -0.509 4.509
8 H 0.058 0.942
9 C 0.048 3.952
10 C -0.044 4.044
11 C -0.107 4.107
12 C -0.145 4.145
13 C 0.121 3.879
14 N -0.680 5.680
15 C 0.704 3.296
16 O -0.563 6.563
17 N -0.630 5.630
18 C 0.115 3.885
19 C 0.114 3.886
20 N -0.622 5.622
21 C 0.523 3.477
22 O -0.529 6.529
23 C -0.154 4.154
24 C -0.124 4.124
25 C 0.113 3.887
26 H 0.092 0.908
27 C 0.103 3.897
28 C -0.117 4.117
29 C -0.106 4.106
30 H 0.261 0.739
31 H 0.029 0.971
32 H 0.029 0.971
33 H 0.122 0.878
34 H 0.113 0.887
35 H 0.399 0.601
36 H 0.072 0.928
37 H 0.111 0.889
38 H 0.101 0.899
39 H 0.078 0.922
40 H 0.102 0.898
41 H 0.106 0.894
42 H 0.089 0.911
43 H 0.096 0.904
44 H 0.090 0.910
45 H 0.081 0.919
46 H 0.123 0.877
47 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.258 -25.650 3.383 29.540
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.144 4.144
3 Si 0.722 3.278
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.210 1.210
7 C -0.547 4.547
8 H 0.076 0.924
9 C 0.011 3.989
10 C -0.044 4.044
11 C -0.125 4.125
12 C -0.166 4.166
13 C 0.029 3.971
14 N -0.330 5.330
15 C 0.406 3.594
16 O -0.438 6.438
17 N -0.369 5.369
18 C -0.009 4.009
19 C -0.008 4.008
20 N -0.357 5.357
21 C 0.311 3.689
22 O -0.405 6.405
23 C -0.195 4.195
24 C -0.163 4.163
25 C 0.008 3.992
26 H 0.110 0.890
27 C -0.021 4.021
28 C -0.137 4.137
29 C -0.125 4.125
30 H 0.071 0.929
31 H 0.047 0.953
32 H 0.047 0.953
33 H 0.140 0.860
34 H 0.131 0.869
35 H 0.236 0.764
36 H 0.090 0.910
37 H 0.129 0.871
38 H 0.119 0.881
39 H 0.096 0.904
40 H 0.121 0.879
41 H 0.125 0.875
42 H 0.108 0.892
43 H 0.114 0.886
44 H 0.108 0.892
45 H 0.099 0.901
46 H 0.141 0.859
47 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 14.798 -25.005 2.334 29.150
hybrid contribution 0.454 0.677 0.469 0.940
sum 15.252 -24.329 2.803 28.851
Atomic orbital electron populations
1.69964 1.06009 1.26665 1.50766 1.25013 0.94884 0.99260 0.95252
0.86493 0.80226 0.83515 0.77589 1.19643 1.20946 1.20976 1.21120
0.93136 0.89861 1.50628 0.92390 1.18354 0.92559 0.89636 0.98367
1.20713 0.96576 0.95295 0.91861 1.20867 0.97585 0.95534 0.98550
1.20676 1.01709 0.98855 0.95338 1.17289 0.93813 0.91600 0.94432
1.42669 1.33424 1.28627 1.28258 1.15857 0.79111 0.82183 0.82255
1.90981 1.71134 1.38210 1.43490 1.47194 1.43589 1.20233 1.25869
1.21920 0.87271 1.03997 0.87666 1.22249 0.97218 0.91144 0.90200
1.48584 1.43176 1.19882 1.24102 1.20766 0.83029 0.82425 0.82687
1.90748 1.22834 1.77936 1.49020 1.22408 1.01005 0.98177 0.97881
1.22320 1.02731 0.93117 0.98085 1.22227 0.89972 0.99685 0.87288
0.88988 1.22163 0.96379 0.92557 0.91030 1.20975 0.97578 0.98458
0.96676 1.20995 0.97183 0.95781 0.98539 0.92939 0.95297 0.95319
0.85991 0.86914 0.76411 0.91023 0.87069 0.88077 0.90388 0.87945
0.87538 0.89188 0.88592 0.89150 0.90094 0.85891 0.86094
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16
2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
3 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16
4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
7 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16
8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16
9 C 0.05 1.22 5.10 -29.03 -0.15 1.07 16
10 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16
11 C -0.11 -2.00 9.69 -39.61 -0.38 -2.39 16
12 C -0.15 -2.27 9.96 -39.39 -0.39 -2.66 16
13 C 0.12 1.92 6.28 -83.69 -0.53 1.40 16
14 N -0.68 -8.04 5.25 -14.22 -0.07 -8.11 16
15 C 0.70 9.04 7.98 -86.91 -0.69 8.34 16
16 O -0.56 -9.73 13.43 5.29 0.07 -9.66 16
17 N -0.63 -5.50 2.93 -177.94 -0.52 -6.02 16
18 C 0.12 0.93 6.58 -3.43 -0.02 0.91 16
19 C 0.11 0.86 7.10 -3.06 -0.02 0.83 16
20 N -0.62 -4.47 2.92 -163.38 -0.48 -4.95 16
21 C 0.52 4.46 8.02 -11.06 -0.09 4.37 16
22 O -0.53 -6.86 17.82 5.55 0.10 -6.76 16
23 C -0.15 -0.63 6.92 -26.67 -0.18 -0.82 16
24 C -0.12 -0.27 6.68 -25.70 -0.17 -0.45 16
25 C 0.11 0.53 3.77 -66.86 -0.25 0.27 16
26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
27 C 0.10 0.50 5.80 -3.53 -0.02 0.48 16
28 C -0.12 -2.12 8.65 -39.40 -0.34 -2.46 16
29 C -0.11 -2.14 9.69 -39.61 -0.38 -2.53 16
30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
31 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16
32 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16
33 H 0.12 2.19 8.06 -52.49 -0.42 1.76 16
34 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16
35 H 0.40 3.12 6.23 -40.82 -0.25 2.87 16
36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
37 H 0.11 1.07 6.92 -51.93 -0.36 0.71 16
38 H 0.10 0.74 8.00 -51.93 -0.42 0.33 16
39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
40 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16
41 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16
42 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16
43 H 0.10 0.02 7.81 -51.93 -0.41 -0.38 16
44 H 0.09 0.29 5.54 -51.93 -0.29 0.00 16
45 H 0.08 0.31 8.12 -51.93 -0.42 -0.11 16
46 H 0.12 2.23 6.43 -52.48 -0.34 1.89 16
47 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16
LS Contribution 382.63 15.07 5.77 5.77
Total: -1.00 -36.54 382.63 -10.66 -47.19
By element:
Atomic # 1 Polarization: 6.41 SS G_CDS: -6.67 Total: -0.26 kcal
Atomic # 6 Polarization: -3.66 SS G_CDS: -4.57 Total: -8.23 kcal
Atomic # 7 Polarization: -44.45 SS G_CDS: -0.34 Total: -44.79 kcal
Atomic # 8 Polarization: -16.59 SS G_CDS: 0.17 Total: -16.42 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -36.54 -10.66 -47.19 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000932571767.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.932 kcal
(2) G-P(sol) polarization free energy of solvation -36.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.604 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds