Wall clock time and date at job start Sat Apr 11 2020 06:53:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31510 * 1
3 3 Si 1.86805 * 120.00088 * 2 1
4 4 H 1.48494 * 109.46972 * 180.02562 * 3 2 1
5 5 H 1.48509 * 109.46875 * 300.00295 * 3 2 1
6 6 H 1.48499 * 109.46861 * 60.00001 * 3 2 1
7 7 C 1.37877 * 120.00291 * 180.02562 * 2 1 3
8 8 H 1.07996 * 120.00611 * 179.97438 * 7 2 1
9 9 C 1.50708 * 119.99651 * 359.97438 * 7 2 1
10 10 C 1.50696 * 109.47025 * 180.02562 * 9 7 2
11 11 C 1.38286 * 119.93129 * 89.99417 * 10 9 7
12 12 C 1.38118 * 120.06986 * 180.02562 * 11 10 9
13 13 C 1.38867 * 119.92593 * 0.02562 * 12 11 10
14 14 N 1.39946 * 120.06676 * 179.97438 * 13 12 11
15 15 C 1.34776 * 120.00022 * 212.81003 * 14 13 12
16 16 O 1.21586 * 120.00092 * 7.61169 * 15 14 13
17 17 N 1.34785 * 119.99896 * 187.62048 * 15 14 13
18 18 C 1.46769 * 119.95840 * 174.46003 * 17 15 14
19 19 C 1.53891 * 109.20826 * 124.71231 * 18 17 15
20 20 N 1.47452 * 106.61129 * 47.25426 * 19 18 17
21 21 C 1.33694 * 127.56310 * 123.88444 * 20 19 18
22 22 O 1.21285 * 125.35237 * 18.51050 * 21 20 19
23 23 C 1.51520 * 109.29875 * 198.51153 * 21 20 19
24 24 C 1.54540 * 104.02676 * 335.19762 * 23 21 20
25 25 C 1.47792 * 121.30195 * 304.70717 * 20 19 18
26 26 H 1.09000 * 110.42157 * 296.85649 * 25 20 19
27 27 C 1.47186 * 119.96009 * 354.47652 * 17 15 14
28 28 C 1.38866 * 119.86303 * 0.25258 * 13 12 11
29 29 C 1.38109 * 119.93131 * 359.49204 * 28 13 12
30 30 H 0.97003 * 120.00294 * 359.97438 * 1 2 3
31 31 H 1.08993 * 109.47407 * 59.99653 * 9 7 2
32 32 H 1.08998 * 109.46546 * 299.99561 * 9 7 2
33 33 H 1.07993 * 119.96536 * 0.02562 * 11 10 9
34 34 H 1.07995 * 120.03390 * 180.02562 * 12 11 10
35 35 H 0.97008 * 120.00050 * 32.79885 * 14 13 12
36 36 H 1.08997 * 109.51759 * 244.63443 * 18 17 15
37 37 H 1.08999 * 109.51477 * 4.74313 * 18 17 15
38 38 H 1.09006 * 110.02051 * 166.52550 * 19 18 17
39 39 H 1.08992 * 110.02495 * 287.97673 * 19 18 17
40 40 H 1.08998 * 110.51821 * 216.56039 * 23 21 20
41 41 H 1.09007 * 110.63360 * 93.89393 * 23 21 20
42 42 H 1.09003 * 110.70647 * 262.81910 * 24 23 21
43 43 H 1.08999 * 110.70584 * 139.57811 * 24 23 21
44 44 H 1.09004 * 109.79189 * 355.78926 * 27 17 15
45 45 H 1.09003 * 109.79440 * 116.63505 * 27 17 15
46 46 H 1.08009 * 120.02998 * 179.72372 * 28 13 12
47 47 H 1.07999 * 119.96618 * 180.25352 * 29 28 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7091 1.3464 -0.0006
5 1 1.8903 2.3965 -1.2126
6 1 1.8904 2.3964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2303 -3.6446 -0.0005
11 6 2.6787 -4.1689 1.1979
12 6 3.5767 -5.2184 1.2012
13 6 4.0295 -5.7465 -0.0006
14 7 4.9397 -6.8095 -0.0007
15 6 5.8587 -6.9098 -0.9815
16 8 5.9892 -6.0082 -1.7867
17 7 6.6328 -8.0096 -1.0697
18 6 7.5471 -8.1730 -2.2062
19 6 8.9751 -8.3987 -1.6789
20 7 8.8770 -9.4205 -0.6203
21 6 9.5280 -10.5861 -0.5498
22 8 10.5332 -10.8670 -1.1676
23 6 8.8126 -11.5012 0.4232
24 6 8.0604 -10.5330 1.3640
25 6 7.9721 -9.2449 0.5349
26 1 8.2722 -8.3788 1.1248
27 6 6.5601 -9.0453 -0.0265
28 6 3.5816 -5.2139 -1.2023
29 6 2.6797 -4.1680 -1.1990
30 1 -0.4851 0.8400 0.0004
31 1 0.6240 -2.5567 -0.8902
32 1 0.6248 -2.5570 0.8897
33 1 2.3265 -3.7575 2.1322
34 1 3.9262 -5.6277 2.1375
35 1 4.9094 -7.4741 0.7053
36 1 7.2385 -9.0327 -2.8011
37 1 7.5239 -7.2754 -2.8241
38 1 9.6180 -8.7555 -2.4836
39 1 9.3716 -7.4710 -1.2665
40 1 9.5310 -12.0984 0.9847
41 1 8.1090 -12.1465 -0.1029
42 1 8.6291 -10.3646 2.2785
43 1 7.0648 -10.9133 1.5924
44 1 5.8889 -8.7215 0.7689
45 1 6.1990 -9.9790 -0.4579
46 1 3.9355 -5.6197 -2.1387
47 1 2.3279 -3.7561 -2.1333
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000932571767.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:46
Heat of formation + Delta-G solvation = -37.831026 kcal
Electronic energy + Delta-G solvation = -29228.707598 eV
Core-core repulsion = 25182.843299 eV
Total energy + Delta-G solvation = -4045.864299 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.26882 -41.30861 -39.82331 -38.30294 -36.47994 -36.09701 -35.08383 -34.12090
-32.11297 -31.73981 -30.68142 -29.57945 -28.20984 -25.73709 -25.37322 -24.29083
-23.75864 -22.30679 -22.13930 -21.26795 -20.36915 -19.30219 -18.52258 -18.39103
-17.66186 -17.15402 -16.86445 -16.76793 -16.65578 -16.21420 -15.96519 -15.86414
-15.49678 -15.02345 -14.79938 -14.61333 -14.50640 -14.42876 -14.20536 -14.07562
-13.64930 -13.51097 -13.30094 -13.19242 -13.12829 -12.72046 -12.60685 -12.55458
-12.45603 -12.30553 -11.99256 -11.83472 -11.68013 -11.52613 -11.21015 -10.96118
-10.90766 -10.59912 -10.41986 -9.72985 -9.47508 -8.79462 -8.17683 -6.32011
0.50377 0.60853 1.31942 1.38388 1.39574 1.46613 1.52979 1.97793
1.98662 2.40252 2.69402 3.04962 3.10924 3.33725 3.57375 3.61906
3.85862 4.00559 4.05948 4.08726 4.16657 4.18155 4.19317 4.36914
4.41947 4.49860 4.55487 4.64175 4.69165 4.71078 4.76628 4.86832
4.92558 5.12598 5.15126 5.16889 5.24076 5.35150 5.38375 5.41799
5.44930 5.51219 5.64118 5.76966 5.78527 6.12005 6.12402 6.15163
6.28690 6.77368 6.80876 7.07692 7.36180 7.39157 8.89649
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.025022 B = 0.001982 C = 0.001931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1118.762909 B =14126.448746 C =14498.151824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C 0.004 3.996
3 Si 0.963 3.037
4 H -0.269 1.269
5 H -0.278 1.278
6 H -0.272 1.272
7 C -0.526 4.526
8 H 0.050 0.950
9 C 0.057 3.943
10 C -0.078 4.078
11 C -0.111 4.111
12 C -0.127 4.127
13 C 0.140 3.860
14 N -0.664 5.664
15 C 0.700 3.300
16 O -0.613 6.613
17 N -0.621 5.621
18 C 0.120 3.880
19 C 0.117 3.883
20 N -0.624 5.624
21 C 0.510 3.490
22 O -0.586 6.586
23 C -0.147 4.147
24 C -0.111 4.111
25 C 0.111 3.889
26 H 0.090 0.910
27 C 0.098 3.902
28 C -0.124 4.124
29 C -0.120 4.120
30 H 0.265 0.735
31 H 0.000 1.000
32 H 0.010 0.990
33 H 0.127 0.873
34 H 0.163 0.837
35 H 0.422 0.578
36 H 0.085 0.915
37 H 0.091 0.909
38 H 0.097 0.903
39 H 0.070 0.930
40 H 0.108 0.892
41 H 0.125 0.875
42 H 0.101 0.899
43 H 0.129 0.871
44 H 0.116 0.884
45 H 0.102 0.898
46 H 0.120 0.880
47 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.342 -27.919 5.894 32.398
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.194 4.194
3 Si 0.787 3.213
4 H -0.193 1.193
5 H -0.203 1.203
6 H -0.198 1.198
7 C -0.564 4.564
8 H 0.068 0.932
9 C 0.020 3.980
10 C -0.079 4.079
11 C -0.130 4.130
12 C -0.147 4.147
13 C 0.045 3.955
14 N -0.316 5.316
15 C 0.403 3.597
16 O -0.492 6.492
17 N -0.358 5.358
18 C -0.004 4.004
19 C -0.006 4.006
20 N -0.358 5.358
21 C 0.301 3.699
22 O -0.466 6.466
23 C -0.186 4.186
24 C -0.148 4.148
25 C 0.008 3.992
26 H 0.108 0.892
27 C -0.025 4.025
28 C -0.144 4.144
29 C -0.139 4.139
30 H 0.074 0.926
31 H 0.019 0.981
32 H 0.028 0.972
33 H 0.145 0.855
34 H 0.180 0.820
35 H 0.264 0.736
36 H 0.103 0.897
37 H 0.109 0.891
38 H 0.115 0.885
39 H 0.089 0.911
40 H 0.127 0.873
41 H 0.143 0.857
42 H 0.119 0.881
43 H 0.147 0.853
44 H 0.133 0.867
45 H 0.120 0.880
46 H 0.138 0.862
47 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 15.879 -27.342 4.902 31.996
hybrid contribution 0.193 1.256 -0.339 1.316
sum 16.072 -26.086 4.564 30.977
Atomic orbital electron populations
1.70074 1.07496 1.27815 1.51482 1.25894 0.95791 1.02961 0.94738
0.85432 0.78809 0.78993 0.78036 1.19327 1.20320 1.19777 1.21410
0.92939 0.91431 1.50617 0.93155 1.18088 0.92891 0.91009 0.95979
1.20396 0.97927 0.95704 0.93822 1.20978 0.98125 0.96444 0.97445
1.20988 0.99615 0.96982 0.97114 1.17322 0.92991 0.91562 0.93595
1.42411 1.32226 1.28066 1.28874 1.16038 0.79478 0.82556 0.81672
1.90965 1.72599 1.40404 1.45263 1.47228 1.42239 1.19678 1.26620
1.21880 0.87458 1.03552 0.87547 1.22110 0.96725 0.91164 0.90582
1.48763 1.43225 1.19362 1.24470 1.21654 0.82412 0.83189 0.82686
1.90714 1.25426 1.79023 1.51487 1.22454 1.01137 0.97838 0.97212
1.22389 1.04440 0.90736 0.97279 1.22439 0.89011 1.01234 0.86562
0.89153 1.22546 0.97108 0.92207 0.90645 1.20960 0.97361 0.98205
0.97913 1.20894 0.98356 0.96969 0.97664 0.92573 0.98138 0.97171
0.85461 0.81985 0.73571 0.89662 0.89092 0.88501 0.91143 0.87333
0.85747 0.88081 0.85317 0.86653 0.87963 0.86195 0.87488
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16
2 C 0.00 0.25 5.46 84.66 0.46 0.71 16
3 Si 0.96 45.23 29.54 68.60 2.03 47.25 16
4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
6 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16
7 C -0.53 -30.66 9.09 25.60 0.23 -30.43 16
8 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16
9 C 0.06 3.10 5.10 29.10 0.15 3.25 16
10 C -0.08 -3.47 5.07 -19.84 -0.10 -3.57 16
11 C -0.11 -4.07 9.69 22.25 0.22 -3.85 16
12 C -0.13 -3.52 9.96 22.39 0.22 -3.30 16
13 C 0.14 4.06 6.28 38.15 0.24 4.30 16
14 N -0.66 -13.22 5.25 -317.17 -1.66 -14.88 16
15 C 0.70 16.45 7.98 179.05 1.43 17.88 16
16 O -0.61 -20.99 13.43 -3.99 -0.05 -21.04 16
17 N -0.62 -9.19 2.93 -835.12 -2.45 -11.63 16
18 C 0.12 1.81 6.58 86.63 0.57 2.38 16
19 C 0.12 1.70 7.10 86.50 0.61 2.32 16
20 N -0.62 -7.78 2.92 -789.81 -2.30 -10.08 16
21 C 0.51 7.94 8.02 88.09 0.71 8.65 16
22 O -0.59 -15.31 17.82 -3.05 -0.05 -15.37 16
23 C -0.15 -0.68 6.92 30.63 0.21 -0.47 16
24 C -0.11 0.07 6.68 31.26 0.21 0.28 16
25 C 0.11 0.60 3.77 44.98 0.17 0.77 16
26 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16
27 C 0.10 0.49 5.80 86.34 0.50 0.99 16
28 C -0.12 -4.49 8.65 22.39 0.19 -4.29 16
29 C -0.12 -5.04 9.69 22.25 0.22 -4.82 16
30 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16
31 H 0.00 0.02 8.08 -2.39 -0.02 0.00 16
32 H 0.01 0.56 8.08 -2.39 -0.02 0.54 16
33 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16
34 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16
35 H 0.42 4.26 6.23 -92.70 -0.58 3.69 16
36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16
37 H 0.09 1.80 6.92 -2.39 -0.02 1.78 16
38 H 0.10 1.48 8.00 -2.38 -0.02 1.46 16
39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
40 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16
41 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16
42 H 0.10 -0.19 8.14 -2.39 -0.02 -0.21 16
43 H 0.13 -0.83 7.81 -2.39 -0.02 -0.85 16
44 H 0.12 0.02 5.54 -2.38 -0.01 0.00 16
45 H 0.10 0.21 8.12 -2.39 -0.02 0.19 16
46 H 0.12 4.41 6.43 -2.91 -0.02 4.39 16
47 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16
Total: -1.00 -85.32 382.63 2.45 -82.87
By element:
Atomic # 1 Polarization: 7.73 SS G_CDS: 0.42 Total: 8.15 kcal
Atomic # 6 Polarization: -15.46 SS G_CDS: 6.24 Total: -9.22 kcal
Atomic # 7 Polarization: -86.52 SS G_CDS: -6.13 Total: -92.65 kcal
Atomic # 8 Polarization: -36.30 SS G_CDS: -0.11 Total: -36.41 kcal
Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal
Total: -85.32 2.45 -82.87 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000932571767.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.035 kcal
(2) G-P(sol) polarization free energy of solvation -85.316 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.281 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.831 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds