Wall clock time and date at job start Sat Apr 11 2020 06:52:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30826 * 1
3 3 Si 1.86802 * 119.99690 * 2 1
4 4 H 1.48503 * 109.46705 * 269.99476 * 3 2 1
5 5 H 1.48493 * 109.47305 * 29.99161 * 3 2 1
6 6 H 1.48497 * 109.47111 * 150.00018 * 3 2 1
7 7 C 1.39922 * 120.00153 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99926 * 189.86833 * 7 2 1
9 9 C 1.41410 * 120.00284 * 9.86949 * 7 2 1
10 10 C 1.40775 * 120.21367 * 209.11904 * 9 7 2
11 11 C 1.37634 * 119.88652 * 179.97438 * 10 9 7
12 12 C 1.38532 * 120.32312 * 359.97438 * 11 10 9
13 13 C 1.39247 * 120.42687 * 359.97438 * 12 11 10
14 14 N 1.39957 * 119.94675 * 179.97438 * 13 12 11
15 15 C 1.34783 * 119.99450 * 143.86630 * 14 13 12
16 16 O 1.21585 * 120.00220 * 4.60739 * 15 14 13
17 17 N 1.34777 * 119.99392 * 184.60239 * 15 14 13
18 18 C 1.46934 * 120.55588 * 174.74152 * 17 15 14
19 19 C 1.53324 * 108.69403 * 125.73609 * 18 17 15
20 20 C 1.52203 * 109.42849 * 53.42932 * 19 18 17
21 21 C 1.53807 * 110.66797 * 64.09292 * 20 19 18
22 22 N 1.46920 * 105.33880 * 93.30271 * 21 20 19
23 23 C 1.34504 * 111.30025 * 16.66613 * 22 21 20
24 24 O 1.21280 * 124.94170 * 179.33589 * 23 22 21
25 25 C 1.51436 * 110.10409 * 359.19864 * 23 22 21
26 26 C 1.52196 * 111.41288 * 300.50103 * 20 19 18
27 27 C 1.46927 * 120.56091 * 354.76869 * 17 15 14
28 28 C 1.38278 * 120.10656 * 0.27356 * 13 12 11
29 29 H 0.97001 * 120.00724 * 0.02562 * 1 2 3
30 30 H 1.08004 * 120.05326 * 0.02562 * 10 9 7
31 31 H 1.08006 * 119.83812 * 179.97438 * 11 10 9
32 32 H 1.07994 * 119.78755 * 179.97438 * 12 11 10
33 33 H 0.96991 * 120.00389 * 323.87360 * 14 13 12
34 34 H 1.09008 * 109.59992 * 5.97747 * 18 17 15
35 35 H 1.08997 * 109.60225 * 245.49835 * 18 17 15
36 36 H 1.09005 * 109.47900 * 293.44317 * 19 18 17
37 37 H 1.09004 * 109.48815 * 173.42350 * 19 18 17
38 38 H 1.08994 * 110.27427 * 334.32731 * 21 20 19
39 39 H 1.09003 * 110.26937 * 212.26250 * 21 20 19
40 40 H 0.97002 * 124.34876 * 196.40834 * 22 21 20
41 41 H 1.08995 * 110.67121 * 225.94720 * 25 23 22
42 42 H 1.09005 * 110.29463 * 103.27845 * 25 23 22
43 43 H 1.08995 * 109.48543 * 179.48075 * 26 20 19
44 44 H 1.09004 * 109.47910 * 299.50772 * 26 20 19
45 45 H 1.08992 * 109.60339 * 354.02245 * 27 17 15
46 46 H 1.08995 * 109.59749 * 114.49852 * 27 17 15
47 47 H 1.07992 * 120.16045 * 179.72340 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2422 1.6178 0.0000
4 1 2.4897 2.0464 -1.4001
5 1 1.4396 2.6527 0.6998
6 1 3.5397 1.4403 0.7000
7 6 2.0079 -1.2117 0.0005
8 1 3.0759 -1.2185 0.1608
9 6 1.3166 -2.4275 -0.2088
10 6 1.7961 -3.6222 0.3609
11 6 1.1177 -4.8016 0.1532
12 6 -0.0359 -4.8192 -0.6138
13 6 -0.5225 -3.6451 -1.1826
14 7 -1.6885 -3.6745 -1.9562
15 6 -2.5546 -2.6429 -1.9090
16 8 -2.2837 -1.6508 -1.2604
17 7 -3.7209 -2.7111 -2.5810
18 6 -4.7237 -1.6455 -2.4468
19 6 -5.0810 -1.1281 -3.8452
20 6 -5.4927 -2.2978 -4.7279
21 6 -6.7748 -2.9573 -4.1921
22 7 -7.8773 -2.3045 -4.9111
23 6 -7.4328 -1.6568 -6.0029
24 8 -8.1336 -1.0444 -6.7806
25 6 -5.9297 -1.8008 -6.1177
26 6 -4.3733 -3.3214 -4.8517
27 6 -4.0113 -3.8524 -3.4595
28 6 0.1479 -2.4511 -0.9897
29 1 -0.4851 0.8400 -0.0004
30 1 2.6943 -3.6131 0.9606
31 1 1.4864 -5.7178 0.5903
32 1 -0.5611 -5.7495 -0.7715
33 1 -1.8733 -4.4373 -2.5260
34 1 -4.3141 -0.8310 -1.8493
35 1 -5.6169 -2.0425 -1.9646
36 1 -4.2145 -0.6311 -4.2813
37 1 -5.9068 -0.4204 -3.7711
38 1 -6.8685 -2.7848 -3.1199
39 1 -6.7664 -4.0264 -4.4040
40 1 -8.8068 -2.3395 -4.6359
41 1 -5.4672 -0.8398 -6.3426
42 1 -5.6776 -2.5354 -6.8826
43 1 -4.7040 -4.1476 -5.4810
44 1 -3.4982 -2.8507 -5.2999
45 1 -3.1322 -4.4928 -3.5296
46 1 -4.8492 -4.4206 -3.0557
47 1 -0.2263 -1.5408 -1.4342
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001476609972.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:42
Heat of formation + Delta-G solvation = -28.221064 kcal
Electronic energy + Delta-G solvation = -30281.119170 eV
Core-core repulsion = 26235.671589 eV
Total energy + Delta-G solvation = -4045.447580 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.39701 -39.88893 -38.19449 -37.08373 -35.53282 -34.28926 -33.20338 -32.81943
-31.35377 -29.49997 -29.32110 -27.91808 -26.60008 -25.18052 -23.88257 -23.68082
-21.44749 -20.92897 -20.79562 -19.72761 -18.64344 -18.14655 -17.58441 -17.01838
-16.39890 -15.96769 -15.46372 -15.18883 -15.12024 -14.64635 -14.61198 -14.46853
-14.34887 -13.85291 -13.58371 -13.45251 -13.34184 -13.06723 -12.83751 -12.76689
-12.44824 -12.22338 -11.98400 -11.54219 -11.52057 -11.36153 -11.13695 -11.03818
-10.91553 -10.74939 -10.68638 -10.47804 -10.15032 -9.99176 -9.66980 -9.45981
-9.23400 -8.98343 -8.85752 -8.43195 -7.25214 -6.87148 -6.42970 -4.23471
2.30380 2.76928 2.93180 3.03788 3.10310 3.16888 3.19671 3.27850
3.77140 3.94538 4.02064 4.06520 4.19362 4.24637 4.52311 4.68887
4.80169 4.82295 4.96083 5.03976 5.12003 5.17530 5.23413 5.31966
5.39187 5.54275 5.57977 5.68546 5.76376 5.80841 5.92986 6.03783
6.23999 6.44100 6.47541 6.58963 6.65823 6.77134 6.95795 7.07032
7.22831 7.33332 7.46013 7.79399 7.91978 7.93347 7.98380 8.18826
8.40923 8.58070 8.74252 9.04241 9.08665 9.24502 10.41190
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.014944 B = 0.002856 C = 0.002498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1873.253504 B = 9802.512693 C =11208.052173
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.763 5.763
2 C 0.069 3.931
3 Si 0.904 3.096
4 H -0.271 1.271
5 H -0.279 1.279
6 H -0.265 1.265
7 C -0.467 4.467
8 H 0.075 0.925
9 C 0.117 3.883
10 C -0.236 4.236
11 C -0.084 4.084
12 C -0.265 4.265
13 C 0.153 3.847
14 N -0.683 5.683
15 C 0.689 3.311
16 O -0.527 6.527
17 N -0.635 5.635
18 C 0.132 3.868
19 C -0.122 4.122
20 C -0.067 4.067
21 C 0.105 3.895
22 N -0.732 5.732
23 C 0.520 3.480
24 O -0.539 6.539
25 C -0.148 4.148
26 C -0.120 4.120
27 C 0.112 3.888
28 C -0.150 4.150
29 H 0.279 0.721
30 H 0.091 0.909
31 H 0.089 0.911
32 H 0.086 0.914
33 H 0.389 0.611
34 H 0.101 0.899
35 H 0.061 0.939
36 H 0.078 0.922
37 H 0.074 0.926
38 H 0.086 0.914
39 H 0.075 0.925
40 H 0.409 0.591
41 H 0.105 0.895
42 H 0.106 0.894
43 H 0.079 0.921
44 H 0.079 0.921
45 H 0.080 0.920
46 H 0.067 0.933
47 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.446 -6.931 -9.592 17.913
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.387 5.387
2 C -0.150 4.150
3 Si 0.729 3.271
4 H -0.196 1.196
5 H -0.204 1.204
6 H -0.189 1.189
7 C -0.496 4.496
8 H 0.093 0.907
9 C 0.114 3.886
10 C -0.256 4.256
11 C -0.103 4.103
12 C -0.286 4.286
13 C 0.061 3.939
14 N -0.332 5.332
15 C 0.391 3.609
16 O -0.399 6.399
17 N -0.376 5.376
18 C 0.008 3.992
19 C -0.160 4.160
20 C -0.067 4.067
21 C -0.019 4.019
22 N -0.388 5.388
23 C 0.307 3.693
24 O -0.416 6.416
25 C -0.188 4.188
26 C -0.158 4.158
27 C -0.013 4.013
28 C -0.171 4.171
29 H 0.090 0.910
30 H 0.109 0.891
31 H 0.107 0.893
32 H 0.104 0.896
33 H 0.224 0.776
34 H 0.119 0.881
35 H 0.079 0.921
36 H 0.097 0.903
37 H 0.093 0.907
38 H 0.104 0.896
39 H 0.093 0.907
40 H 0.247 0.753
41 H 0.123 0.877
42 H 0.124 0.876
43 H 0.097 0.903
44 H 0.098 0.902
45 H 0.098 0.902
46 H 0.085 0.915
47 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -13.722 -5.664 -9.509 17.630
hybrid contribution -0.245 0.124 -0.088 0.288
sum -13.967 -5.540 -9.597 17.829
Atomic orbital electron populations
1.69893 1.06565 1.28783 1.33447 1.25934 0.94932 1.00842 0.93298
0.86394 0.80360 0.81351 0.79016 1.19604 1.20447 1.18878 1.19492
0.95525 0.90390 1.44219 0.90707 1.17538 0.91094 0.92084 0.87900
1.21017 1.03335 0.93645 1.07583 1.20268 0.95281 0.96466 0.98263
1.20005 1.02431 0.95463 1.10728 1.17428 0.85648 0.95368 0.95483
1.42708 1.22002 1.21072 1.47453 1.16056 0.79768 0.84273 0.80824
1.91166 1.74713 1.29863 1.44161 1.47303 1.17646 1.23666 1.48968
1.21406 0.90481 0.91205 0.96084 1.21870 1.02151 0.96278 0.95732
1.20927 0.94561 0.96675 0.94559 1.22287 0.85210 0.96901 0.97528
1.46301 1.10719 1.53995 1.27736 1.20991 0.90972 0.77238 0.80111
1.90760 1.63430 1.42596 1.44814 1.22437 0.93243 1.04911 0.98258
1.21856 0.98288 0.98158 0.97527 1.21583 1.01279 0.88787 0.89608
1.21594 0.96911 0.96516 1.02087 0.91000 0.89099 0.89266 0.89604
0.77583 0.88092 0.92116 0.90339 0.90696 0.89619 0.90687 0.75264
0.87673 0.87589 0.90250 0.90242 0.90164 0.91525 0.83884
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -20.86 10.83 55.55 0.60 -20.26 16
2 C 0.07 1.82 5.27 -17.35 -0.09 1.72 16
3 Si 0.90 19.48 29.57 -169.99 -5.03 14.46 16
4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16
5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16
6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16
7 C -0.47 -12.73 9.06 -37.74 -0.34 -13.07 16
8 H 0.07 1.96 7.86 -52.48 -0.41 1.54 16
9 C 0.12 3.20 5.55 -106.85 -0.59 2.60 16
10 C -0.24 -5.87 9.79 -38.84 -0.38 -6.25 16
11 C -0.08 -1.88 10.02 -39.69 -0.40 -2.27 16
12 C -0.26 -5.75 9.97 -39.10 -0.39 -6.14 16
13 C 0.15 3.52 6.27 -83.76 -0.53 2.99 16
14 N -0.68 -12.46 5.24 -14.27 -0.07 -12.53 16
15 C 0.69 12.81 8.13 -86.91 -0.71 12.10 16
16 O -0.53 -12.53 13.26 5.29 0.07 -12.46 16
17 N -0.64 -8.06 2.96 -178.32 -0.53 -8.59 16
18 C 0.13 1.47 6.15 -3.64 -0.02 1.45 16
19 C -0.12 -1.08 4.80 -26.97 -0.13 -1.21 16
20 C -0.07 -0.45 0.60 -154.42 -0.09 -0.55 16
21 C 0.11 0.60 5.88 -3.39 -0.02 0.58 16
22 N -0.73 -5.21 6.25 -59.38 -0.37 -5.58 16
23 C 0.52 5.20 8.45 -10.75 -0.09 5.10 16
24 O -0.54 -7.79 18.03 5.56 0.10 -7.69 16
25 C -0.15 -1.11 5.95 -27.03 -0.16 -1.27 16
26 C -0.12 -0.78 4.68 -26.97 -0.13 -0.90 16
27 C 0.11 0.92 6.12 -3.64 -0.02 0.90 16
28 C -0.15 -3.98 7.28 -38.68 -0.28 -4.26 16
29 H 0.28 7.15 8.30 -40.82 -0.34 6.82 16
30 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16
31 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16
32 H 0.09 1.61 8.06 -52.49 -0.42 1.18 16
33 H 0.39 5.46 6.30 -40.82 -0.26 5.21 16
34 H 0.10 1.45 6.99 -51.92 -0.36 1.09 16
35 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16
36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.09 0.46 6.11 -51.93 -0.32 0.15 16
39 H 0.07 0.33 7.80 -51.93 -0.40 -0.08 16
40 H 0.41 2.40 8.96 -40.82 -0.37 2.03 16
41 H 0.10 0.81 7.88 -51.93 -0.41 0.40 16
42 H 0.11 0.65 7.85 -51.93 -0.41 0.24 16
43 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16
44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
45 H 0.08 0.64 5.63 -51.93 -0.29 0.35 16
46 H 0.07 0.43 7.60 -51.93 -0.39 0.04 16
47 H 0.14 4.09 4.48 -52.49 -0.24 3.86 16
LS Contribution 370.41 15.07 5.58 5.58
Total: -1.00 -34.57 370.41 -10.31 -44.88
By element:
Atomic # 1 Polarization: 16.95 SS G_CDS: -6.29 Total: 10.66 kcal
Atomic # 6 Polarization: -4.09 SS G_CDS: -4.37 Total: -8.46 kcal
Atomic # 7 Polarization: -46.59 SS G_CDS: -0.37 Total: -46.96 kcal
Atomic # 8 Polarization: -20.32 SS G_CDS: 0.17 Total: -20.15 kcal
Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.46 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -34.57 -10.31 -44.88 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001476609972.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.656 kcal
(2) G-P(sol) polarization free energy of solvation -34.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.913 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.221 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds