Wall clock time and date at job start Sat Apr 11 2020 06:52:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30826 * 1
3 3 Si 1.86802 * 119.99690 * 2 1
4 4 H 1.48503 * 109.46705 * 269.99476 * 3 2 1
5 5 H 1.48493 * 109.47305 * 29.99161 * 3 2 1
6 6 H 1.48497 * 109.47111 * 150.00018 * 3 2 1
7 7 C 1.39922 * 120.00153 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99926 * 189.86833 * 7 2 1
9 9 C 1.41410 * 120.00284 * 9.86949 * 7 2 1
10 10 C 1.40775 * 120.21367 * 209.11904 * 9 7 2
11 11 C 1.37634 * 119.88652 * 179.97438 * 10 9 7
12 12 C 1.38532 * 120.32312 * 359.97438 * 11 10 9
13 13 C 1.39247 * 120.42687 * 359.97438 * 12 11 10
14 14 N 1.39957 * 119.94675 * 179.97438 * 13 12 11
15 15 C 1.34783 * 119.99450 * 143.86630 * 14 13 12
16 16 O 1.21585 * 120.00220 * 4.60739 * 15 14 13
17 17 N 1.34777 * 119.99392 * 184.60239 * 15 14 13
18 18 C 1.46934 * 120.55588 * 174.74152 * 17 15 14
19 19 C 1.53324 * 108.69403 * 125.73609 * 18 17 15
20 20 C 1.52203 * 109.42849 * 53.42932 * 19 18 17
21 21 C 1.53807 * 110.66797 * 64.09292 * 20 19 18
22 22 N 1.46920 * 105.33880 * 93.30271 * 21 20 19
23 23 C 1.34504 * 111.30025 * 16.66613 * 22 21 20
24 24 O 1.21280 * 124.94170 * 179.33589 * 23 22 21
25 25 C 1.51436 * 110.10409 * 359.19864 * 23 22 21
26 26 C 1.52196 * 111.41288 * 300.50103 * 20 19 18
27 27 C 1.46927 * 120.56091 * 354.76869 * 17 15 14
28 28 C 1.38278 * 120.10656 * 0.27356 * 13 12 11
29 29 H 0.97001 * 120.00724 * 0.02562 * 1 2 3
30 30 H 1.08004 * 120.05326 * 0.02562 * 10 9 7
31 31 H 1.08006 * 119.83812 * 179.97438 * 11 10 9
32 32 H 1.07994 * 119.78755 * 179.97438 * 12 11 10
33 33 H 0.96991 * 120.00389 * 323.87360 * 14 13 12
34 34 H 1.09008 * 109.59992 * 5.97747 * 18 17 15
35 35 H 1.08997 * 109.60225 * 245.49835 * 18 17 15
36 36 H 1.09005 * 109.47900 * 293.44317 * 19 18 17
37 37 H 1.09004 * 109.48815 * 173.42350 * 19 18 17
38 38 H 1.08994 * 110.27427 * 334.32731 * 21 20 19
39 39 H 1.09003 * 110.26937 * 212.26250 * 21 20 19
40 40 H 0.97002 * 124.34876 * 196.40834 * 22 21 20
41 41 H 1.08995 * 110.67121 * 225.94720 * 25 23 22
42 42 H 1.09005 * 110.29463 * 103.27845 * 25 23 22
43 43 H 1.08995 * 109.48543 * 179.48075 * 26 20 19
44 44 H 1.09004 * 109.47910 * 299.50772 * 26 20 19
45 45 H 1.08992 * 109.60339 * 354.02245 * 27 17 15
46 46 H 1.08995 * 109.59749 * 114.49852 * 27 17 15
47 47 H 1.07992 * 120.16045 * 179.72340 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2422 1.6178 0.0000
4 1 2.4897 2.0464 -1.4001
5 1 1.4396 2.6527 0.6998
6 1 3.5397 1.4403 0.7000
7 6 2.0079 -1.2117 0.0005
8 1 3.0759 -1.2185 0.1608
9 6 1.3166 -2.4275 -0.2088
10 6 1.7961 -3.6222 0.3609
11 6 1.1177 -4.8016 0.1532
12 6 -0.0359 -4.8192 -0.6138
13 6 -0.5225 -3.6451 -1.1826
14 7 -1.6885 -3.6745 -1.9562
15 6 -2.5546 -2.6429 -1.9090
16 8 -2.2837 -1.6508 -1.2604
17 7 -3.7209 -2.7111 -2.5810
18 6 -4.7237 -1.6455 -2.4468
19 6 -5.0810 -1.1281 -3.8452
20 6 -5.4927 -2.2978 -4.7279
21 6 -6.7748 -2.9573 -4.1921
22 7 -7.8773 -2.3045 -4.9111
23 6 -7.4328 -1.6568 -6.0029
24 8 -8.1336 -1.0444 -6.7806
25 6 -5.9297 -1.8008 -6.1177
26 6 -4.3733 -3.3214 -4.8517
27 6 -4.0113 -3.8524 -3.4595
28 6 0.1479 -2.4511 -0.9897
29 1 -0.4851 0.8400 -0.0004
30 1 2.6943 -3.6131 0.9606
31 1 1.4864 -5.7178 0.5903
32 1 -0.5611 -5.7495 -0.7715
33 1 -1.8733 -4.4373 -2.5260
34 1 -4.3141 -0.8310 -1.8493
35 1 -5.6169 -2.0425 -1.9646
36 1 -4.2145 -0.6311 -4.2813
37 1 -5.9068 -0.4204 -3.7711
38 1 -6.8685 -2.7848 -3.1199
39 1 -6.7664 -4.0264 -4.4040
40 1 -8.8068 -2.3395 -4.6359
41 1 -5.4672 -0.8398 -6.3426
42 1 -5.6776 -2.5354 -6.8826
43 1 -4.7040 -4.1476 -5.4810
44 1 -3.4982 -2.8507 -5.2999
45 1 -3.1322 -4.4928 -3.5296
46 1 -4.8492 -4.4206 -3.0557
47 1 -0.2263 -1.5408 -1.4342
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001476609972.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:52:41
Heat of formation + Delta-G solvation = -52.581233 kcal
Electronic energy + Delta-G solvation = -30282.175506 eV
Core-core repulsion = 26235.671589 eV
Total energy + Delta-G solvation = -4046.503916 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.17254 -41.15092 -39.41030 -38.53429 -36.52905 -36.00055 -34.93404 -33.70812
-32.20488 -31.34181 -30.35520 -29.34370 -27.29304 -27.10201 -24.85436 -24.45259
-23.06613 -22.45914 -21.58212 -21.03923 -19.94699 -19.34341 -18.66088 -18.16654
-17.57114 -17.03353 -16.80089 -16.53306 -16.34100 -16.01304 -15.84349 -15.51903
-15.21002 -15.04653 -14.72173 -14.52346 -14.50874 -14.14998 -14.08610 -13.93202
-13.60984 -13.38124 -13.33180 -12.88708 -12.80479 -12.68705 -12.58558 -12.25991
-12.19522 -12.09934 -11.79974 -11.59722 -11.49418 -11.48288 -11.07151 -10.92579
-10.76872 -10.53762 -10.07197 -9.51838 -9.17132 -8.65733 -8.31598 -6.26334
0.98629 1.20257 1.37126 1.49846 1.52393 1.56238 1.76116 2.24973
2.36179 2.46671 2.89606 3.09070 3.31681 3.38249 3.58851 3.83002
3.86442 4.01527 4.11295 4.24829 4.41654 4.54327 4.55826 4.62015
4.65822 4.68732 4.72744 4.77394 4.88965 4.95419 4.99698 5.01545
5.05604 5.17076 5.21933 5.33363 5.34235 5.37192 5.50411 5.70486
5.85341 5.87413 5.97711 6.02522 6.07732 6.22388 6.29435 6.53737
6.79546 7.05299 7.15285 7.17067 7.25385 7.83225 8.48419
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.014944 B = 0.002856 C = 0.002498
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1873.253504 B = 9802.512693 C =11208.052173
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.799 5.799
2 C 0.025 3.975
3 Si 0.976 3.024
4 H -0.266 1.266
5 H -0.273 1.273
6 H -0.257 1.257
7 C -0.505 4.505
8 H 0.072 0.928
9 C 0.080 3.920
10 C -0.254 4.254
11 C -0.083 4.083
12 C -0.251 4.251
13 C 0.156 3.844
14 N -0.672 5.672
15 C 0.681 3.319
16 O -0.587 6.587
17 N -0.623 5.623
18 C 0.131 3.869
19 C -0.113 4.113
20 C -0.059 4.059
21 C 0.106 3.894
22 N -0.720 5.720
23 C 0.513 3.487
24 O -0.593 6.593
25 C -0.142 4.142
26 C -0.112 4.112
27 C 0.102 3.898
28 C -0.180 4.180
29 H 0.277 0.723
30 H 0.095 0.905
31 H 0.129 0.871
32 H 0.129 0.871
33 H 0.411 0.589
34 H 0.059 0.941
35 H 0.090 0.910
36 H 0.057 0.943
37 H 0.078 0.922
38 H 0.094 0.906
39 H 0.106 0.894
40 H 0.416 0.584
41 H 0.097 0.903
42 H 0.127 0.873
43 H 0.117 0.883
44 H 0.065 0.935
45 H 0.086 0.914
46 H 0.101 0.899
47 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.709 -10.055 -10.410 20.636
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.423 5.423
2 C -0.190 4.190
3 Si 0.798 3.202
4 H -0.191 1.191
5 H -0.198 1.198
6 H -0.181 1.181
7 C -0.535 4.535
8 H 0.090 0.910
9 C 0.078 3.922
10 C -0.274 4.274
11 C -0.102 4.102
12 C -0.273 4.273
13 C 0.062 3.938
14 N -0.324 5.324
15 C 0.382 3.618
16 O -0.464 6.464
17 N -0.362 5.362
18 C 0.008 3.992
19 C -0.152 4.152
20 C -0.060 4.060
21 C -0.017 4.017
22 N -0.374 5.374
23 C 0.301 3.699
24 O -0.475 6.475
25 C -0.182 4.182
26 C -0.151 4.151
27 C -0.019 4.019
28 C -0.201 4.201
29 H 0.087 0.913
30 H 0.113 0.887
31 H 0.147 0.853
32 H 0.147 0.853
33 H 0.251 0.749
34 H 0.078 0.922
35 H 0.108 0.892
36 H 0.076 0.924
37 H 0.097 0.903
38 H 0.112 0.888
39 H 0.124 0.876
40 H 0.255 0.745
41 H 0.116 0.884
42 H 0.145 0.855
43 H 0.135 0.865
44 H 0.084 0.916
45 H 0.104 0.896
46 H 0.119 0.881
47 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -15.028 -8.874 -10.348 20.290
hybrid contribution 0.041 0.905 0.153 0.919
sum -14.986 -7.969 -10.195 19.800
Atomic orbital electron populations
1.70043 1.08043 1.29287 1.34950 1.26756 0.95676 1.04146 0.92467
0.85298 0.79048 0.76707 0.79154 1.19087 1.19811 1.18075 1.19727
0.95592 0.91676 1.46555 0.90993 1.17939 0.92112 0.93227 0.88960
1.21223 1.04060 0.94096 1.08056 1.20714 0.94930 0.96931 0.97585
1.20482 1.01849 0.96421 1.08521 1.17555 0.86396 0.94690 0.95149
1.42473 1.20590 1.21998 1.47293 1.16358 0.81073 0.83406 0.80926
1.91149 1.76298 1.32029 1.46880 1.47292 1.15629 1.25127 1.48140
1.21488 0.90555 0.90040 0.97137 1.21757 1.01455 0.97319 0.94655
1.20834 0.95577 0.95898 0.93682 1.22457 0.83487 0.98142 0.97657
1.46324 1.11601 1.52816 1.26701 1.21385 0.91776 0.76699 0.80077
1.90733 1.64738 1.45095 1.46894 1.22415 0.91411 1.05296 0.99100
1.21842 0.97513 0.98934 0.96788 1.22010 1.02887 0.87357 0.89694
1.21468 0.97881 0.97190 1.03599 0.91275 0.88705 0.85325 0.85300
0.74886 0.92218 0.89212 0.92422 0.90300 0.88756 0.87637 0.74504
0.88446 0.85501 0.86517 0.91623 0.89557 0.88145 0.86662
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.80 -46.47 10.83 21.82 0.24 -46.23 16
2 C 0.03 1.38 5.27 85.25 0.45 1.83 16
3 Si 0.98 41.85 29.57 68.60 2.03 43.88 16
4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16
5 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16
6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16
7 C -0.51 -29.08 9.06 23.46 0.21 -28.86 16
8 H 0.07 3.97 7.86 -2.91 -0.02 3.95 16
9 C 0.08 4.58 5.55 -21.31 -0.12 4.47 16
10 C -0.25 -12.77 9.79 22.75 0.22 -12.55 16
11 C -0.08 -3.53 10.02 22.20 0.22 -3.31 16
12 C -0.25 -10.21 9.97 22.58 0.23 -9.98 16
13 C 0.16 7.11 6.27 38.10 0.24 7.34 16
14 N -0.67 -23.67 5.24 -317.32 -1.66 -25.33 16
15 C 0.68 25.42 8.13 179.05 1.46 26.88 16
16 O -0.59 -29.47 13.26 -3.98 -0.05 -29.52 16
17 N -0.62 -14.91 2.96 -836.36 -2.48 -17.38 16
18 C 0.13 2.85 6.15 86.41 0.53 3.38 16
19 C -0.11 -1.91 4.80 30.44 0.15 -1.77 16
20 C -0.06 -0.63 0.60 -52.12 -0.03 -0.66 16
21 C 0.11 0.74 5.88 86.57 0.51 1.25 16
22 N -0.72 -8.20 6.25 -460.32 -2.88 -11.07 16
23 C 0.51 9.42 8.45 87.93 0.74 10.16 16
24 O -0.59 -17.06 18.03 -3.03 -0.05 -17.11 16
25 C -0.14 -1.80 5.95 30.40 0.18 -1.62 16
26 C -0.11 -1.00 4.68 30.44 0.14 -0.86 16
27 C 0.10 1.27 6.12 86.41 0.53 1.80 16
28 C -0.18 -9.95 7.28 22.85 0.17 -9.78 16
29 H 0.28 15.20 8.30 -92.71 -0.77 14.43 16
30 H 0.09 4.52 8.06 -2.91 -0.02 4.50 16
31 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16
32 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16
33 H 0.41 10.29 6.30 -92.71 -0.58 9.71 16
34 H 0.06 1.83 6.99 -2.38 -0.02 1.82 16
35 H 0.09 1.44 6.54 -2.39 -0.02 1.43 16
36 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16
37 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16
38 H 0.09 0.58 6.11 -2.39 -0.01 0.56 16
39 H 0.11 0.24 7.80 -2.39 -0.02 0.22 16
40 H 0.42 3.81 8.96 -92.71 -0.83 2.98 16
41 H 0.10 1.42 7.88 -2.39 -0.02 1.40 16
42 H 0.13 1.11 7.85 -2.38 -0.02 1.09 16
43 H 0.12 0.30 8.08 -2.39 -0.02 0.28 16
44 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16
45 H 0.09 1.00 5.63 -2.39 -0.01 0.99 16
46 H 0.10 0.68 7.60 -2.39 -0.02 0.66 16
47 H 0.12 7.05 4.48 -2.91 -0.01 7.03 16
Total: -1.00 -83.61 370.41 0.58 -83.02
By element:
Atomic # 1 Polarization: 32.43 SS G_CDS: -0.38 Total: 32.04 kcal
Atomic # 6 Polarization: -18.12 SS G_CDS: 5.83 Total: -12.29 kcal
Atomic # 7 Polarization: -93.24 SS G_CDS: -6.78 Total: -100.02 kcal
Atomic # 8 Polarization: -46.53 SS G_CDS: -0.11 Total: -46.63 kcal
Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal
Total: -83.61 0.58 -83.02 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001476609972.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.441 kcal
(2) G-P(sol) polarization free energy of solvation -83.607 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.023 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.581 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds