Wall clock time and date at job start Sat Apr 11 2020 06:53:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30743 * 1
3 3 Si 1.86799 * 120.00151 * 2 1
4 4 H 1.48500 * 109.46981 * 275.00339 * 3 2 1
5 5 H 1.48498 * 109.46881 * 34.99945 * 3 2 1
6 6 H 1.48497 * 109.47188 * 155.00142 * 3 2 1
7 7 C 1.40034 * 119.99553 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99318 * 185.39340 * 7 2 1
9 9 C 1.41336 * 120.00193 * 5.39326 * 7 2 1
10 10 C 1.40636 * 119.78214 * 185.47061 * 9 7 2
11 11 C 1.38310 * 119.12957 * 180.02562 * 10 9 7
12 12 C 1.38689 * 118.66998 * 359.74254 * 11 10 9
13 13 C 1.39664 * 119.49967 * 0.52677 * 12 11 10
14 14 N 1.39111 * 119.58408 * 179.74051 * 13 12 11
15 15 C 1.34777 * 120.00529 * 175.01500 * 14 13 12
16 16 O 1.21360 * 119.99707 * 5.10898 * 15 14 13
17 17 C 1.49361 * 120.00357 * 185.11020 * 15 14 13
18 18 O 1.21362 * 119.99902 * 5.73759 * 17 15 14
19 19 N 1.34778 * 120.00130 * 185.74165 * 17 15 14
20 20 C 1.48740 * 120.19073 * 176.85039 * 19 17 15
21 21 C 1.46532 * 109.86025 * 102.77179 * 20 19 17
22 22 C 1.53240 * 112.42515 * 58.46347 * 21 20 19
23 23 C 1.50265 * 107.61145 * 278.65381 * 22 21 20
24 24 C 1.53518 * 118.32956 * 239.11086 * 23 22 21
25 25 C 1.52914 * 60.06994 * 108.42370 * 24 23 22
26 26 C 1.55421 * 117.14270 * 94.17446 * 23 22 21
27 27 C 1.43343 * 120.18880 * 356.87354 * 19 17 15
28 28 N 1.31969 * 120.83773 * 359.46344 * 13 12 11
29 29 H 0.97006 * 119.99814 * 359.97438 * 1 2 3
30 30 H 1.07998 * 120.43383 * 359.97438 * 10 9 7
31 31 H 1.07998 * 120.65755 * 180.02562 * 11 10 9
32 32 H 1.08000 * 120.25382 * 180.26810 * 12 11 10
33 33 H 0.97003 * 119.99748 * 355.01910 * 14 13 12
34 34 H 1.09005 * 109.40136 * 342.65635 * 20 19 17
35 35 H 1.08996 * 109.34352 * 222.85655 * 20 19 17
36 36 H 1.09003 * 108.87367 * 179.19071 * 21 20 19
37 37 H 1.08997 * 108.87673 * 297.73180 * 21 20 19
38 38 H 1.09003 * 109.82564 * 38.27186 * 22 21 20
39 39 H 1.08994 * 109.82677 * 159.20144 * 22 21 20
40 40 H 1.09003 * 117.48833 * 215.93029 * 24 23 22
41 41 H 1.08997 * 117.49268 * 0.91837 * 24 23 22
42 42 H 1.08995 * 117.48343 * 252.45749 * 25 24 23
43 43 H 1.09007 * 117.48090 * 107.53370 * 25 24 23
44 44 H 1.09003 * 109.50944 * 201.30556 * 26 23 22
45 45 H 1.09003 * 109.50671 * 81.16342 * 26 23 22
46 46 H 1.09004 * 108.67083 * 34.18229 * 27 19 17
47 47 H 1.08999 * 108.67488 * 152.22132 * 27 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2415 1.6177 0.0000
4 1 2.3832 2.1074 -1.3948
5 1 1.4957 2.6198 0.8030
6 1 3.5878 1.4119 0.5917
7 6 2.0075 -1.2128 -0.0005
8 1 3.0839 -1.2148 0.0874
9 6 1.3055 -2.4340 -0.1161
10 6 1.9989 -3.6520 -0.0006
11 6 1.2986 -4.8391 -0.1164
12 6 -0.0694 -4.7857 -0.3381
13 6 -0.7002 -3.5445 -0.4491
14 7 -2.0714 -3.4889 -0.6768
15 6 -2.7055 -2.2997 -0.6854
16 8 -2.0682 -1.2715 -0.5872
17 6 -4.1925 -2.2470 -0.8157
18 8 -4.8389 -3.2741 -0.8091
19 7 -4.8164 -1.0589 -0.9407
20 6 -6.2893 -1.0049 -1.1409
21 6 -6.9491 -0.6366 0.1145
22 6 -6.4695 0.7158 0.6521
23 6 -5.1712 0.4842 1.3724
24 6 -5.0848 0.8619 2.8579
25 6 -5.1109 -0.6103 2.4453
26 6 -3.8627 0.6946 0.5607
27 6 -4.0642 0.1599 -0.8820
28 7 -0.0127 -2.4238 -0.3354
29 1 -0.4850 0.8401 0.0004
30 1 3.0644 -3.6604 0.1755
31 1 1.8063 -5.7885 -0.0314
32 1 -0.6420 -5.6969 -0.4283
33 1 -2.5712 -4.3061 -0.8294
34 1 -6.6467 -1.9824 -1.4648
35 1 -6.5229 -0.2628 -1.9042
36 1 -8.0250 -0.5878 -0.0538
37 1 -6.7437 -1.4052 0.8595
38 1 -6.3166 1.4092 -0.1749
39 1 -7.2076 1.1215 1.3439
40 1 -4.1395 1.2663 3.2200
41 1 -5.9807 1.2690 3.3265
42 1 -6.0238 -1.1719 2.6429
43 1 -4.1828 -1.1747 2.5364
44 1 -3.0465 0.1530 1.0389
45 1 -3.6235 1.7575 0.5248
46 1 -3.0857 -0.0120 -1.3303
47 1 -4.5852 0.9199 -1.4642
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000890411783.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:35
Heat of formation + Delta-G solvation = 30.418717 kcal
Electronic energy + Delta-G solvation = -31682.682438 eV
Core-core repulsion = 27639.777670 eV
Total energy + Delta-G solvation = -4042.904768 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-40.74572 -39.18323 -38.22292 -37.22944 -35.76124 -34.29613 -33.22179 -32.80873
-30.39227 -29.98414 -29.21644 -27.00035 -25.72462 -24.41275 -23.78046 -22.61389
-22.01090 -21.37503 -20.38007 -19.11036 -18.51582 -17.71998 -16.92021 -16.68555
-16.14231 -15.80938 -15.35522 -14.81975 -14.71286 -14.49983 -14.38761 -14.05356
-13.83357 -13.66754 -13.56288 -13.34833 -12.92398 -12.83074 -12.42832 -12.05112
-12.02815 -11.91159 -11.67922 -11.35208 -11.22182 -11.14366 -11.02203 -10.84128
-10.80824 -10.70300 -10.54455 -10.39886 -9.99662 -9.95651 -9.75180 -9.44802
-9.08988 -8.76650 -8.45247 -8.04759 -7.30178 -7.05386 -6.27375 -4.44984
1.95927 2.75716 2.81434 3.07857 3.12546 3.15194 3.22483 3.80830
3.95668 3.97922 4.00672 4.65553 4.78953 4.84590 4.86337 4.97823
4.99912 5.14546 5.19908 5.23094 5.37983 5.56225 5.68435 5.75997
5.76785 5.84519 5.95672 5.97242 6.04781 6.06286 6.12248 6.12843
6.24489 6.27090 6.34404 6.44815 6.57748 6.60544 6.73786 6.77476
6.78966 7.17527 7.35152 7.49729 7.52667 7.75713 7.88332 8.05361
8.19196 8.37609 8.63717 8.92844 9.01662 10.12872 10.38880
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011111 B = 0.004642 C = 0.003650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2519.436060 B = 6030.175548 C = 7668.568526
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.663 5.663
2 C 0.064 3.936
3 Si 0.896 3.104
4 H -0.272 1.272
5 H -0.278 1.278
6 H -0.264 1.264
7 C -0.425 4.425
8 H 0.082 0.918
9 C 0.274 3.726
10 C -0.301 4.301
11 C -0.036 4.036
12 C -0.349 4.349
13 C 0.369 3.631
14 N -0.639 5.639
15 C 0.467 3.533
16 O -0.380 6.380
17 C 0.508 3.492
18 O -0.539 6.539
19 N -0.571 5.571
20 C 0.117 3.883
21 C -0.140 4.140
22 C -0.075 4.075
23 C -0.118 4.118
24 C -0.180 4.180
25 C -0.171 4.171
26 C -0.094 4.094
27 C 0.090 3.910
28 N -0.474 5.474
29 H 0.271 0.729
30 H 0.097 0.903
31 H 0.097 0.903
32 H 0.094 0.906
33 H 0.410 0.590
34 H 0.089 0.911
35 H 0.073 0.927
36 H 0.069 0.931
37 H 0.072 0.928
38 H 0.070 0.930
39 H 0.063 0.937
40 H 0.092 0.908
41 H 0.087 0.913
42 H 0.087 0.913
43 H 0.091 0.909
44 H 0.086 0.914
45 H 0.071 0.929
46 H 0.123 0.877
47 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.949 3.492 -0.100 13.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.282 5.282
2 C -0.165 4.165
3 Si 0.720 3.280
4 H -0.197 1.197
5 H -0.203 1.203
6 H -0.188 1.188
7 C -0.456 4.456
8 H 0.101 0.899
9 C 0.149 3.851
10 C -0.324 4.324
11 C -0.060 4.060
12 C -0.374 4.374
13 C 0.131 3.869
14 N -0.287 5.287
15 C 0.244 3.756
16 O -0.244 6.244
17 C 0.292 3.708
18 O -0.417 6.417
19 N -0.304 5.304
20 C -0.005 4.005
21 C -0.178 4.178
22 C -0.112 4.112
23 C -0.119 4.119
24 C -0.217 4.217
25 C -0.208 4.208
26 C -0.132 4.132
27 C -0.034 4.034
28 N -0.193 5.193
29 H 0.083 0.917
30 H 0.116 0.884
31 H 0.116 0.884
32 H 0.112 0.888
33 H 0.246 0.754
34 H 0.107 0.893
35 H 0.091 0.909
36 H 0.088 0.912
37 H 0.091 0.909
38 H 0.089 0.911
39 H 0.082 0.918
40 H 0.110 0.890
41 H 0.105 0.895
42 H 0.106 0.894
43 H 0.110 0.890
44 H 0.105 0.895
45 H 0.089 0.911
46 H 0.140 0.860
47 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -13.475 4.748 -0.079 14.287
hybrid contribution 0.465 -0.552 0.189 0.746
sum -13.011 4.196 0.110 13.671
Atomic orbital electron populations
1.70255 1.05955 1.27323 1.24667 1.26093 0.95086 1.00497 0.94838
0.86505 0.80734 0.81847 0.78901 1.19694 1.20309 1.18764 1.19567
0.94433 0.89441 1.42168 0.89946 1.18342 0.87026 0.91964 0.87783
1.21662 0.99273 0.93516 1.17950 1.20580 0.93129 0.96679 0.95616
1.20513 0.95665 0.94970 1.26302 1.18526 0.83007 0.91198 0.94176
1.43035 1.07015 1.08991 1.69653 1.20146 0.87461 0.85856 0.82110
1.91040 1.65056 1.30177 1.38094 1.20757 0.89528 0.83647 0.76895
1.90671 1.67734 1.33461 1.49807 1.47453 1.07566 1.05990 1.69417
1.20733 0.79174 1.03119 0.97426 1.20918 0.99761 0.98405 0.98744
1.20590 0.94431 0.96670 0.99532 1.21703 0.96546 1.03796 0.89810
1.23163 1.02607 0.98465 0.97460 1.23079 1.02741 0.91485 1.03476
1.22411 0.94854 1.01090 0.94880 1.21890 0.99176 0.84857 0.97443
1.68591 1.07435 1.23320 1.19970 0.91715 0.88445 0.88440 0.88801
0.75430 0.89289 0.90873 0.91219 0.90934 0.91126 0.91811 0.88996
0.89457 0.89441 0.89001 0.89542 0.91068 0.85964 0.92235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.66 -16.64 9.14 55.55 0.51 -16.13 16
2 C 0.06 1.57 5.48 -17.34 -0.10 1.47 16
3 Si 0.90 18.28 29.56 -169.99 -5.03 13.25 16
4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16
6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16
7 C -0.43 -11.17 9.13 -37.73 -0.34 -11.51 16
8 H 0.08 2.05 7.85 -52.49 -0.41 1.63 16
9 C 0.27 7.38 6.53 -85.00 -0.56 6.83 16
10 C -0.30 -7.36 9.83 -38.65 -0.38 -7.74 16
11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16
12 C -0.35 -7.78 9.95 -38.88 -0.39 -8.17 16
13 C 0.37 8.84 7.42 -155.08 -1.15 7.69 16
14 N -0.64 -13.13 5.36 -11.84 -0.06 -13.20 16
15 C 0.47 9.41 7.71 -11.63 -0.09 9.32 16
16 O -0.38 -8.37 7.83 5.49 0.04 -8.33 16
17 C 0.51 8.84 7.74 -11.63 -0.09 8.75 16
18 O -0.54 -9.96 15.99 5.49 0.09 -9.87 16
19 N -0.57 -8.19 2.35 -177.08 -0.42 -8.60 16
20 C 0.12 1.32 5.69 -5.89 -0.03 1.28 16
21 C -0.14 -1.44 5.41 -29.69 -0.16 -1.60 16
22 C -0.07 -0.76 5.37 -27.97 -0.15 -0.91 16
23 C -0.12 -1.47 1.67 -154.12 -0.26 -1.73 16
24 C -0.18 -2.17 9.83 -26.51 -0.26 -2.44 16
25 C -0.17 -2.31 8.94 -26.58 -0.24 -2.55 16
26 C -0.09 -1.34 5.87 -24.30 -0.14 -1.49 16
27 C 0.09 1.27 4.64 -4.56 -0.02 1.25 16
28 N -0.47 -12.63 5.76 -10.28 -0.06 -12.69 16
29 H 0.27 6.26 8.29 -40.82 -0.34 5.92 16
30 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16
31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16
32 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16
33 H 0.41 7.36 8.20 -40.82 -0.33 7.02 16
34 H 0.09 1.07 7.19 -51.93 -0.37 0.69 16
35 H 0.07 0.67 8.03 -51.93 -0.42 0.25 16
36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
37 H 0.07 0.89 5.99 -51.93 -0.31 0.58 16
38 H 0.07 0.67 7.24 -51.93 -0.38 0.30 16
39 H 0.06 0.59 7.90 -51.93 -0.41 0.18 16
40 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16
41 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16
42 H 0.09 1.11 7.10 -51.93 -0.37 0.74 16
43 H 0.09 1.47 7.98 -51.93 -0.41 1.06 16
44 H 0.09 1.55 6.76 -51.93 -0.35 1.20 16
45 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
46 H 0.12 2.10 5.16 -52.12 -0.27 1.84 16
47 H 0.06 0.70 7.42 -51.93 -0.39 0.31 16
LS Contribution 370.46 15.07 5.58 5.58
Total: -1.00 -29.10 370.46 -10.61 -39.71
By element:
Atomic # 1 Polarization: 19.52 SS G_CDS: -6.51 Total: 13.01 kcal
Atomic # 6 Polarization: 2.02 SS G_CDS: -4.76 Total: -2.73 kcal
Atomic # 7 Polarization: -50.59 SS G_CDS: -0.03 Total: -50.62 kcal
Atomic # 8 Polarization: -18.33 SS G_CDS: 0.13 Total: -18.20 kcal
Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -29.10 -10.61 -39.71 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000890411783.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.127 kcal
(2) G-P(sol) polarization free energy of solvation -29.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.030 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.419 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds