Wall clock time and date at job start Sat Apr 11 2020 06:53:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30743 * 1
3 3 Si 1.86799 * 120.00151 * 2 1
4 4 H 1.48500 * 109.46981 * 275.00339 * 3 2 1
5 5 H 1.48498 * 109.46881 * 34.99945 * 3 2 1
6 6 H 1.48497 * 109.47188 * 155.00142 * 3 2 1
7 7 C 1.40034 * 119.99553 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99318 * 185.39340 * 7 2 1
9 9 C 1.41336 * 120.00193 * 5.39326 * 7 2 1
10 10 C 1.40636 * 119.78214 * 185.47061 * 9 7 2
11 11 C 1.38310 * 119.12957 * 180.02562 * 10 9 7
12 12 C 1.38689 * 118.66998 * 359.74254 * 11 10 9
13 13 C 1.39664 * 119.49967 * 0.52677 * 12 11 10
14 14 N 1.39111 * 119.58408 * 179.74051 * 13 12 11
15 15 C 1.34777 * 120.00529 * 175.01500 * 14 13 12
16 16 O 1.21360 * 119.99707 * 5.10898 * 15 14 13
17 17 C 1.49361 * 120.00357 * 185.11020 * 15 14 13
18 18 O 1.21362 * 119.99902 * 5.73759 * 17 15 14
19 19 N 1.34778 * 120.00130 * 185.74165 * 17 15 14
20 20 C 1.48740 * 120.19073 * 176.85039 * 19 17 15
21 21 C 1.46532 * 109.86025 * 102.77179 * 20 19 17
22 22 C 1.53240 * 112.42515 * 58.46347 * 21 20 19
23 23 C 1.50265 * 107.61145 * 278.65381 * 22 21 20
24 24 C 1.53518 * 118.32956 * 239.11086 * 23 22 21
25 25 C 1.52914 * 60.06994 * 108.42370 * 24 23 22
26 26 C 1.55421 * 117.14270 * 94.17446 * 23 22 21
27 27 C 1.43343 * 120.18880 * 356.87354 * 19 17 15
28 28 N 1.31969 * 120.83773 * 359.46344 * 13 12 11
29 29 H 0.97006 * 119.99814 * 359.97438 * 1 2 3
30 30 H 1.07998 * 120.43383 * 359.97438 * 10 9 7
31 31 H 1.07998 * 120.65755 * 180.02562 * 11 10 9
32 32 H 1.08000 * 120.25382 * 180.26810 * 12 11 10
33 33 H 0.97003 * 119.99748 * 355.01910 * 14 13 12
34 34 H 1.09005 * 109.40136 * 342.65635 * 20 19 17
35 35 H 1.08996 * 109.34352 * 222.85655 * 20 19 17
36 36 H 1.09003 * 108.87367 * 179.19071 * 21 20 19
37 37 H 1.08997 * 108.87673 * 297.73180 * 21 20 19
38 38 H 1.09003 * 109.82564 * 38.27186 * 22 21 20
39 39 H 1.08994 * 109.82677 * 159.20144 * 22 21 20
40 40 H 1.09003 * 117.48833 * 215.93029 * 24 23 22
41 41 H 1.08997 * 117.49268 * 0.91837 * 24 23 22
42 42 H 1.08995 * 117.48343 * 252.45749 * 25 24 23
43 43 H 1.09007 * 117.48090 * 107.53370 * 25 24 23
44 44 H 1.09003 * 109.50944 * 201.30556 * 26 23 22
45 45 H 1.09003 * 109.50671 * 81.16342 * 26 23 22
46 46 H 1.09004 * 108.67083 * 34.18229 * 27 19 17
47 47 H 1.08999 * 108.67488 * 152.22132 * 27 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3074 0.0000 0.0000
3 14 2.2415 1.6177 0.0000
4 1 2.3832 2.1074 -1.3948
5 1 1.4957 2.6198 0.8030
6 1 3.5878 1.4119 0.5917
7 6 2.0075 -1.2128 -0.0005
8 1 3.0839 -1.2148 0.0874
9 6 1.3055 -2.4340 -0.1161
10 6 1.9989 -3.6520 -0.0006
11 6 1.2986 -4.8391 -0.1164
12 6 -0.0694 -4.7857 -0.3381
13 6 -0.7002 -3.5445 -0.4491
14 7 -2.0714 -3.4889 -0.6768
15 6 -2.7055 -2.2997 -0.6854
16 8 -2.0682 -1.2715 -0.5872
17 6 -4.1925 -2.2470 -0.8157
18 8 -4.8389 -3.2741 -0.8091
19 7 -4.8164 -1.0589 -0.9407
20 6 -6.2893 -1.0049 -1.1409
21 6 -6.9491 -0.6366 0.1145
22 6 -6.4695 0.7158 0.6521
23 6 -5.1712 0.4842 1.3724
24 6 -5.0848 0.8619 2.8579
25 6 -5.1109 -0.6103 2.4453
26 6 -3.8627 0.6946 0.5607
27 6 -4.0642 0.1599 -0.8820
28 7 -0.0127 -2.4238 -0.3354
29 1 -0.4850 0.8401 0.0004
30 1 3.0644 -3.6604 0.1755
31 1 1.8063 -5.7885 -0.0314
32 1 -0.6420 -5.6969 -0.4283
33 1 -2.5712 -4.3061 -0.8294
34 1 -6.6467 -1.9824 -1.4648
35 1 -6.5229 -0.2628 -1.9042
36 1 -8.0250 -0.5878 -0.0538
37 1 -6.7437 -1.4052 0.8595
38 1 -6.3166 1.4092 -0.1749
39 1 -7.2076 1.1215 1.3439
40 1 -4.1395 1.2663 3.2200
41 1 -5.9807 1.2690 3.3265
42 1 -6.0238 -1.1719 2.6429
43 1 -4.1828 -1.1747 2.5364
44 1 -3.0465 0.1530 1.0389
45 1 -3.6235 1.7575 0.5248
46 1 -3.0857 -0.0120 -1.3303
47 1 -4.5852 0.9199 -1.4642
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000890411783.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:34
Heat of formation + Delta-G solvation = 15.465420 kcal
Electronic energy + Delta-G solvation = -31683.330862 eV
Core-core repulsion = 27639.777670 eV
Total energy + Delta-G solvation = -4043.553192 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.08439 -40.65073 -39.62318 -38.84424 -37.00240 -35.93301 -34.89278 -33.96711
-32.25549 -31.15180 -31.00231 -28.13154 -27.50250 -25.81730 -24.91538 -23.93075
-23.39141 -22.97640 -21.85919 -20.51635 -19.76433 -19.25144 -18.34683 -18.16793
-17.66923 -16.97564 -16.71004 -16.43184 -16.28983 -16.01123 -15.78295 -15.43683
-15.20157 -15.09442 -14.71818 -14.68465 -14.56170 -13.97342 -13.79471 -13.72840
-13.57293 -12.94460 -12.90453 -12.74018 -12.68424 -12.57370 -12.46595 -12.30708
-12.18384 -12.13148 -11.76913 -11.72455 -11.60187 -11.37984 -10.97109 -10.88471
-10.49728 -10.23521 -9.92580 -9.71799 -9.10718 -8.88010 -8.10394 -6.39520
0.42883 1.04912 1.28085 1.42114 1.43270 1.53692 1.55611 2.28396
2.39927 2.57445 2.80095 2.99192 3.42638 3.70176 3.82409 3.95908
4.02651 4.03796 4.14746 4.18115 4.26122 4.33292 4.45901 4.63471
4.67800 4.70001 4.72343 4.81627 4.87425 4.93318 4.94238 4.96349
4.98434 5.02918 5.07442 5.15991 5.21485 5.28348 5.32962 5.40322
5.54142 5.57806 5.64877 5.76601 5.90849 6.04865 6.18045 6.29987
6.53325 6.74627 6.87651 7.05729 7.33791 8.25790 8.56473
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.011111 B = 0.004642 C = 0.003650
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2519.436060 B = 6030.175548 C = 7668.568526
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.686 5.686
2 C 0.020 3.980
3 Si 0.971 3.029
4 H -0.269 1.269
5 H -0.270 1.270
6 H -0.261 1.261
7 C -0.462 4.462
8 H 0.084 0.916
9 C 0.241 3.759
10 C -0.324 4.324
11 C -0.033 4.033
12 C -0.347 4.347
13 C 0.350 3.650
14 N -0.637 5.637
15 C 0.453 3.547
16 O -0.399 6.399
17 C 0.512 3.488
18 O -0.553 6.553
19 N -0.559 5.559
20 C 0.112 3.888
21 C -0.137 4.137
22 C -0.070 4.070
23 C -0.111 4.111
24 C -0.169 4.169
25 C -0.186 4.186
26 C -0.090 4.090
27 C 0.094 3.906
28 N -0.501 5.501
29 H 0.275 0.725
30 H 0.106 0.894
31 H 0.136 0.864
32 H 0.125 0.875
33 H 0.421 0.579
34 H 0.083 0.917
35 H 0.107 0.893
36 H 0.103 0.897
37 H 0.049 0.951
38 H 0.086 0.914
39 H 0.084 0.916
40 H 0.079 0.921
41 H 0.113 0.887
42 H 0.098 0.902
43 H 0.052 0.948
44 H 0.039 0.961
45 H 0.082 0.918
46 H 0.090 0.910
47 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.314 4.713 -0.571 16.033
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.305 5.305
2 C -0.207 4.207
3 Si 0.792 3.208
4 H -0.194 1.194
5 H -0.194 1.194
6 H -0.185 1.185
7 C -0.492 4.492
8 H 0.102 0.898
9 C 0.115 3.885
10 C -0.347 4.347
11 C -0.057 4.057
12 C -0.372 4.372
13 C 0.112 3.888
14 N -0.286 5.286
15 C 0.232 3.768
16 O -0.263 6.263
17 C 0.295 3.705
18 O -0.433 6.433
19 N -0.291 5.291
20 C -0.007 4.007
21 C -0.174 4.174
22 C -0.107 4.107
23 C -0.111 4.111
24 C -0.206 4.206
25 C -0.223 4.223
26 C -0.128 4.128
27 C -0.030 4.030
28 N -0.221 5.221
29 H 0.086 0.914
30 H 0.124 0.876
31 H 0.154 0.846
32 H 0.143 0.857
33 H 0.258 0.742
34 H 0.101 0.899
35 H 0.125 0.875
36 H 0.121 0.879
37 H 0.068 0.932
38 H 0.105 0.895
39 H 0.102 0.898
40 H 0.097 0.903
41 H 0.132 0.868
42 H 0.116 0.884
43 H 0.071 0.929
44 H 0.058 0.942
45 H 0.100 0.900
46 H 0.107 0.893
47 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -15.879 5.959 -0.554 16.969
hybrid contribution 1.160 -1.019 0.338 1.581
sum -14.719 4.940 -0.216 15.527
Atomic orbital electron populations
1.70379 1.07163 1.28324 1.24637 1.26857 0.96017 1.03474 0.94316
0.85371 0.79287 0.77260 0.78872 1.19384 1.19440 1.18453 1.19863
0.94747 0.90516 1.44105 0.89804 1.18814 0.87749 0.93316 0.88587
1.21847 0.99946 0.93792 1.19152 1.21010 0.93218 0.97570 0.93894
1.20930 0.96129 0.95556 1.24600 1.18970 0.84299 0.91514 0.94050
1.43056 1.06020 1.09932 1.69627 1.20813 0.89046 0.85421 0.81509
1.91062 1.66139 1.30744 1.38384 1.20181 0.87970 0.84699 0.77660
1.90659 1.67404 1.34037 1.51195 1.47564 1.09190 1.04836 1.67484
1.21084 0.76390 1.04066 0.99184 1.20885 1.01596 0.97684 0.97275
1.20649 0.92994 0.96931 1.00176 1.21786 0.96896 1.02560 0.89845
1.23217 1.03149 0.96835 0.97380 1.22957 1.01339 0.92229 1.05743
1.22276 0.94672 1.00923 0.94939 1.21779 0.98241 0.85456 0.97515
1.68558 1.07671 1.24873 1.21006 0.91405 0.87577 0.84576 0.85664
0.74175 0.89859 0.87470 0.87876 0.93222 0.89536 0.89768 0.90280
0.86830 0.88364 0.92875 0.94174 0.89965 0.89269 0.88512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.69 -36.13 9.14 21.84 0.20 -35.93 16
2 C 0.02 1.01 5.48 85.29 0.47 1.48 16
3 Si 0.97 38.61 29.56 68.60 2.03 40.63 16
4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16
5 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16
6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16
7 C -0.46 -25.35 9.13 23.47 0.21 -25.13 16
8 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16
9 C 0.24 13.55 6.53 40.22 0.26 13.81 16
10 C -0.32 -16.24 9.83 22.87 0.22 -16.02 16
11 C -0.03 -1.44 10.15 22.39 0.23 -1.22 16
12 C -0.35 -15.37 9.95 22.72 0.23 -15.14 16
13 C 0.35 17.26 7.42 133.28 0.99 18.25 16
14 N -0.64 -27.09 5.36 -309.72 -1.66 -28.75 16
15 C 0.45 19.14 7.71 87.24 0.67 19.81 16
16 O -0.40 -18.62 7.83 -3.28 -0.03 -18.64 16
17 C 0.51 18.08 7.74 87.24 0.68 18.76 16
18 O -0.55 -20.49 15.99 -3.28 -0.05 -20.55 16
19 N -0.56 -15.50 2.35 -832.50 -1.95 -17.45 16
20 C 0.11 2.19 5.69 83.95 0.48 2.67 16
21 C -0.14 -2.32 5.41 28.68 0.16 -2.16 16
22 C -0.07 -1.15 5.37 29.79 0.16 -0.99 16
23 C -0.11 -2.60 1.67 -51.93 -0.09 -2.69 16
24 C -0.17 -3.90 9.83 30.74 0.30 -3.60 16
25 C -0.19 -5.09 8.94 30.69 0.27 -4.81 16
26 C -0.09 -2.58 5.87 32.17 0.19 -2.39 16
27 C 0.09 2.58 4.64 87.71 0.41 2.99 16
28 N -0.50 -27.95 5.76 -186.43 -1.07 -29.03 16
29 H 0.27 13.32 8.29 -92.70 -0.77 12.55 16
30 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16
31 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16
32 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16
33 H 0.42 15.40 8.20 -92.71 -0.76 14.64 16
34 H 0.08 1.79 7.19 -2.38 -0.02 1.77 16
35 H 0.11 1.44 8.03 -2.39 -0.02 1.42 16
36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16
37 H 0.05 1.11 5.99 -2.39 -0.01 1.09 16
38 H 0.09 1.20 7.24 -2.39 -0.02 1.19 16
39 H 0.08 1.12 7.90 -2.39 -0.02 1.10 16
40 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16
41 H 0.11 2.04 8.06 -2.39 -0.02 2.02 16
42 H 0.10 2.44 7.10 -2.39 -0.02 2.43 16
43 H 0.05 1.85 7.98 -2.38 -0.02 1.83 16
44 H 0.04 1.54 6.76 -2.39 -0.02 1.52 16
45 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16
46 H 0.09 3.17 5.16 -5.43 -0.03 3.15 16
47 H 0.10 1.98 7.42 -2.39 -0.02 1.96 16
Total: -1.00 -67.70 370.46 3.54 -64.17
By element:
Atomic # 1 Polarization: 41.70 SS G_CDS: 0.24 Total: 41.94 kcal
Atomic # 6 Polarization: -2.23 SS G_CDS: 5.84 Total: 3.61 kcal
Atomic # 7 Polarization: -106.67 SS G_CDS: -4.49 Total: -111.16 kcal
Atomic # 8 Polarization: -39.11 SS G_CDS: -0.08 Total: -39.19 kcal
Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.63 kcal
Total: -67.70 3.54 -64.17 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000890411783.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.632 kcal
(2) G-P(sol) polarization free energy of solvation -67.703 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.929 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.166 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.465 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds