Wall clock time and date at job start Sat Apr 11 2020 06:53:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.34489 * 126.83104 * 2 1
4 4 N 1.36448 * 108.85229 * 179.97438 * 3 2 1
5 5 H 0.96997 * 124.84895 * 180.02562 * 4 3 2
6 6 C 1.34663 * 110.29932 * 359.73399 * 4 3 2
7 7 C 1.36773 * 108.39667 * 0.43922 * 6 4 3
8 8 C 1.47255 * 126.94261 * 179.83266 * 7 6 4
9 9 O 1.21627 * 120.00296 * 172.96734 * 8 7 6
10 10 N 1.34783 * 120.00044 * 352.97475 * 8 7 6
11 11 C 1.49863 * 127.93255 * 182.31839 * 10 8 7
12 12 C 1.54944 * 103.40314 * 219.93525 * 11 10 8
13 13 C 1.54573 * 102.85797 * 322.44938 * 12 11 10
14 14 H 1.09007 * 118.12706 * 242.38526 * 13 12 11
15 15 C 1.52940 * 118.20385 * 85.42467 * 13 12 11
16 16 C 1.47525 * 127.04327 * 3.14141 * 10 8 7
17 17 C 1.50704 * 117.36666 * 295.06187 * 16 10 8
18 18 O 1.21286 * 119.99620 * 174.01793 * 17 16 10
19 19 N 1.34772 * 120.00144 * 354.01479 * 17 16 10
20 20 C 1.47582 * 134.49319 * 175.07676 * 19 17 16
21 21 C 1.53946 * 86.11682 * 155.35902 * 20 19 17
22 22 C 1.50703 * 113.74190 * 137.95702 * 21 20 19
23 23 H 1.07996 * 119.99750 * 359.97438 * 22 21 20
24 24 C 1.37869 * 119.99713 * 180.02562 * 22 21 20
25 25 N 1.31525 * 119.99734 * 179.97438 * 24 22 21
26 26 Si 1.86803 * 120.00566 * 359.97438 * 24 22 21
27 27 H 1.48500 * 109.47007 * 90.00126 * 26 24 22
28 28 H 1.48496 * 109.46665 * 330.00402 * 26 24 22
29 29 H 1.48499 * 109.47294 * 210.00024 * 26 24 22
30 30 C 1.47580 * 134.49418 * 355.07371 * 19 17 16
31 31 H 1.08998 * 109.46688 * 270.03728 * 1 2 3
32 32 H 1.08999 * 109.46879 * 30.03814 * 1 2 3
33 33 H 1.08997 * 109.47203 * 150.03563 * 1 2 3
34 34 H 1.07995 * 125.57131 * 359.97438 * 3 2 1
35 35 H 1.07998 * 125.80058 * 180.30351 * 6 4 3
36 36 H 1.08999 * 110.69737 * 101.39664 * 11 10 8
37 37 H 1.09000 * 110.49072 * 338.37737 * 11 10 8
38 38 H 1.08991 * 110.73784 * 204.10435 * 12 11 10
39 39 H 1.09000 * 110.89026 * 80.85815 * 12 11 10
40 40 H 1.08995 * 117.45566 * 160.76647 * 15 13 12
41 41 H 1.09001 * 117.45014 * 15.99395 * 15 13 12
42 42 H 1.09004 * 113.76695 * 41.06013 * 20 19 17
43 43 H 1.08993 * 113.77274 * 269.66045 * 20 19 17
44 44 H 1.09003 * 113.74263 * 269.15174 * 21 20 19
45 45 H 0.97001 * 119.99647 * 180.02562 * 25 24 22
46 46 H 1.08995 * 113.76958 * 90.34113 * 30 19 17
47 47 H 1.08999 * 113.76844 * 318.94402 * 30 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3133 1.0765 0.0000
4 7 3.6111 0.6553 0.0006
5 1 4.3840 1.2414 0.0011
6 6 3.6656 -0.6902 0.0068
7 6 2.3864 -1.1741 0.0005
8 6 1.9750 -2.5880 0.0006
9 8 0.8006 -2.8797 0.1235
10 7 2.8998 -3.5590 -0.1355
11 6 2.6777 -5.0393 -0.2071
12 6 3.8434 -5.6185 0.6333
13 6 5.0212 -4.6823 0.2790
14 1 5.8913 -5.1153 -0.2146
15 6 5.1730 -3.3812 1.0684
16 6 4.3619 -3.3868 -0.2296
17 6 4.8975 -2.6589 -1.4356
18 8 6.0790 -2.3949 -1.5093
19 7 4.0637 -2.3013 -2.4322
20 6 4.2137 -1.5235 -3.6774
21 6 3.0017 -2.3182 -4.1964
22 6 2.0058 -1.4793 -4.9551
23 1 2.1814 -0.4222 -5.0893
24 6 0.8701 -2.0613 -5.4770
25 7 0.0008 -1.3291 -6.1387
26 14 0.5660 -3.8896 -5.2443
27 1 -0.1986 -4.1086 -3.9902
28 1 1.8668 -4.6011 -5.1615
29 1 -0.2119 -4.4126 -6.3960
30 6 2.6338 -2.5303 -2.7167
31 1 -0.3632 0.0007 1.0277
32 1 -0.3633 0.8896 -0.5144
33 1 -0.3633 -0.8903 -0.5133
34 1 1.9868 2.1059 -0.0004
35 1 4.5664 -1.2860 0.0133
36 1 2.7364 -5.3883 -1.2381
37 1 1.7168 -5.3028 0.2350
38 1 4.0621 -6.6437 0.3349
39 1 3.6173 -5.5680 1.6984
40 1 6.1474 -2.8930 1.0501
41 1 4.6220 -3.2944 2.0048
42 1 5.1384 -1.7309 -4.2162
43 1 4.0208 -0.4577 -3.5557
44 1 3.2701 -3.2361 -4.7196
45 1 -0.7985 -1.7384 -6.5056
46 1 1.9766 -1.7603 -2.3127
47 1 2.2969 -3.5415 -2.4884
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001275515589.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:18
Heat of formation + Delta-G solvation = 71.926746 kcal
Electronic energy + Delta-G solvation = -32717.912506 eV
Core-core repulsion = 28676.807661 eV
Total energy + Delta-G solvation = -4041.104845 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.53570 -40.39043 -38.88873 -38.04473 -36.85176 -32.84602 -32.50418 -32.19396
-31.55052 -29.59401 -29.01815 -26.32342 -25.89370 -25.28792 -24.35729 -23.22066
-21.93634 -21.20654 -20.32931 -19.61080 -18.94919 -18.08586 -17.64712 -17.09396
-16.69303 -16.26120 -15.68880 -15.18759 -15.11131 -14.60635 -14.31481 -14.15130
-13.90190 -13.71382 -13.48235 -13.08839 -13.04432 -12.95106 -12.84905 -12.54843
-12.39146 -12.33089 -12.10299 -11.99831 -11.80473 -11.61909 -11.25685 -11.09504
-10.94534 -10.79704 -10.72571 -10.52758 -10.02566 -9.87850 -9.60168 -9.46561
-9.23883 -8.70118 -8.54276 -8.31432 -8.14498 -7.98631 -6.16569 -4.18712
1.94768 2.43369 2.62572 2.83336 3.19911 3.27766 3.32893 3.35511
3.41857 3.57986 3.73763 4.26753 4.35169 4.37872 4.56719 4.79506
4.94200 5.04329 5.07772 5.08905 5.13996 5.26082 5.40687 5.51090
5.52153 5.58989 5.68182 5.72787 5.77927 5.83593 5.94077 5.96913
6.02125 6.07815 6.13617 6.16762 6.18503 6.35523 6.39790 6.44057
6.51884 6.55747 7.01446 7.09883 7.18864 7.57886 7.58284 7.64372
8.18560 8.37048 8.46089 8.50223 8.85383 9.44504 10.95503
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.009602 B = 0.006052 C = 0.005209
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2915.488838 B = 4625.368025 C = 5373.662358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C -0.102 4.102
3 C -0.026 4.026
4 N -0.547 5.547
5 H 0.415 0.585
6 C 0.049 3.951
7 C -0.223 4.223
8 C 0.620 3.380
9 O -0.535 6.535
10 N -0.595 5.595
11 C 0.108 3.892
12 C -0.106 4.106
13 C -0.124 4.124
14 H 0.130 0.870
15 C -0.126 4.126
16 C 0.037 3.963
17 C 0.561 3.439
18 O -0.563 6.563
19 N -0.620 5.620
20 C 0.121 3.879
21 C -0.012 4.012
22 C -0.510 4.510
23 H 0.079 0.921
24 C 0.081 3.919
25 N -0.891 5.891
26 Si 0.867 3.133
27 H -0.270 1.270
28 H -0.264 1.264
29 H -0.285 1.285
30 C 0.093 3.907
31 H 0.059 0.941
32 H 0.060 0.940
33 H 0.077 0.923
34 H 0.168 0.832
35 H 0.172 0.828
36 H 0.076 0.924
37 H 0.092 0.908
38 H 0.091 0.909
39 H 0.081 0.919
40 H 0.118 0.882
41 H 0.106 0.894
42 H 0.066 0.934
43 H 0.080 0.920
44 H 0.062 0.938
45 H 0.266 0.734
46 H 0.092 0.908
47 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.295 -2.454 15.839 18.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.108 4.108
3 C -0.154 4.154
4 N -0.141 5.141
5 H 0.251 0.749
6 C -0.088 4.088
7 C -0.233 4.233
8 C 0.413 3.587
9 O -0.412 6.412
10 N -0.330 5.330
11 C -0.013 4.013
12 C -0.144 4.144
13 C -0.143 4.143
14 H 0.148 0.852
15 C -0.164 4.164
16 C -0.054 4.054
17 C 0.349 3.651
18 O -0.444 6.444
19 N -0.351 5.351
20 C -0.001 4.001
21 C -0.032 4.032
22 C -0.548 4.548
23 H 0.097 0.903
24 C -0.123 4.123
25 N -0.528 5.528
26 Si 0.694 3.306
27 H -0.196 1.196
28 H -0.189 1.189
29 H -0.211 1.211
30 C -0.029 4.029
31 H 0.078 0.922
32 H 0.078 0.922
33 H 0.096 0.904
34 H 0.185 0.815
35 H 0.189 0.811
36 H 0.094 0.906
37 H 0.110 0.890
38 H 0.109 0.891
39 H 0.099 0.901
40 H 0.136 0.864
41 H 0.124 0.876
42 H 0.084 0.916
43 H 0.098 0.902
44 H 0.079 0.921
45 H 0.076 0.924
46 H 0.110 0.890
47 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 8.138 -2.320 15.864 17.980
hybrid contribution 0.162 -0.652 -0.022 0.672
sum 8.301 -2.972 15.842 18.130
Atomic orbital electron populations
1.20166 0.89308 1.03002 1.01337 1.20476 0.95523 0.90065 1.04756
1.21526 0.82332 0.99131 1.12367 1.41471 1.08240 1.06593 1.57796
0.74919 1.22435 0.98953 0.83883 1.03511 1.20087 0.92697 0.92070
1.18491 1.17008 0.83840 0.83385 0.74453 1.90763 1.16607 1.83187
1.50650 1.48508 1.03526 1.06669 1.74331 1.22943 0.99484 0.78399
1.00495 1.22426 0.92475 0.98700 1.00811 1.23742 0.99735 0.88276
1.02535 0.85197 1.23553 1.01019 0.98266 0.93595 1.21742 0.81888
1.05873 0.95847 1.18818 0.85387 0.79482 0.81432 1.90689 1.15416
1.58746 1.79527 1.50188 1.12451 1.51378 1.21036 1.23298 0.99583
0.96336 0.80853 1.21083 0.93577 0.96955 0.91551 1.20751 1.03804
0.96412 1.33857 0.90313 1.24940 0.95697 0.97706 0.93921 1.69885
1.11214 1.36047 1.35641 0.86978 0.78918 0.86262 0.78480 1.19553
1.18889 1.21136 1.24165 0.80500 1.00185 0.98059 0.92212 0.92155
0.90381 0.81506 0.81094 0.90551 0.88954 0.89072 0.90081 0.86350
0.87594 0.91559 0.90230 0.92050 0.92413 0.88964 0.92666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.28 9.93 36.01 0.36 -0.93 16
2 C -0.10 -1.68 6.35 -102.53 -0.65 -2.33 16
3 C -0.03 -0.36 11.82 -16.82 -0.20 -0.55 16
4 N -0.55 -6.92 5.90 -12.85 -0.08 -7.00 16
5 H 0.41 3.85 8.96 -40.82 -0.37 3.49 16
6 C 0.05 0.74 9.30 -16.84 -0.16 0.58 16
7 C -0.22 -3.87 4.30 -103.35 -0.44 -4.31 16
8 C 0.62 11.45 5.44 -12.59 -0.07 11.38 16
9 O -0.53 -11.27 15.72 5.25 0.08 -11.19 16
10 N -0.59 -9.37 1.81 -156.15 -0.28 -9.65 16
11 C 0.11 1.42 6.85 -1.14 -0.01 1.41 16
12 C -0.11 -1.01 6.86 -24.88 -0.17 -1.18 16
13 C -0.12 -1.36 6.92 -89.30 -0.62 -1.98 16
14 H 0.13 1.35 8.14 -51.92 -0.42 0.92 16
15 C -0.13 -1.38 8.90 -26.73 -0.24 -1.62 16
16 C 0.04 0.54 1.24 -131.85 -0.16 0.37 16
17 C 0.56 9.86 4.96 -10.99 -0.05 9.81 16
18 O -0.56 -10.79 17.27 5.55 0.10 -10.69 16
19 N -0.62 -11.89 2.87 -178.43 -0.51 -12.40 16
20 C 0.12 2.41 8.39 -2.97 -0.02 2.39 16
21 C -0.01 -0.27 2.90 -90.85 -0.26 -0.54 16
22 C -0.51 -13.61 9.32 -34.44 -0.32 -13.93 16
23 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16
24 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16
25 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16
26 Si 0.87 21.00 27.17 -169.99 -4.62 16.38 16
27 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
28 H -0.26 -6.09 6.25 56.52 0.35 -5.73 16
29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
30 C 0.09 1.98 4.53 -2.98 -0.01 1.97 16
31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
33 H 0.08 1.46 7.00 -51.93 -0.36 1.09 16
34 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16
35 H 0.17 2.58 3.36 -52.49 -0.18 2.41 16
36 H 0.08 1.04 7.77 -51.93 -0.40 0.63 16
37 H 0.09 1.21 7.91 -51.93 -0.41 0.80 16
38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
40 H 0.12 1.24 7.93 -51.93 -0.41 0.83 16
41 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16
42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
43 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16
44 H 0.06 1.42 6.57 -51.93 -0.34 1.07 16
45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16
46 H 0.09 2.14 6.08 -51.93 -0.32 1.83 16
47 H 0.05 1.18 6.60 -51.93 -0.34 0.84 16
LS Contribution 370.35 15.07 5.58 5.58
Total: -1.00 -33.48 370.35 -8.63 -42.12
By element:
Atomic # 1 Polarization: 16.23 SS G_CDS: -6.54 Total: 9.69 kcal
Atomic # 6 Polarization: 5.83 SS G_CDS: -3.14 Total: 2.69 kcal
Atomic # 7 Polarization: -54.48 SS G_CDS: -0.10 Total: -54.58 kcal
Atomic # 8 Polarization: -22.06 SS G_CDS: 0.18 Total: -21.88 kcal
Atomic # 14 Polarization: 21.00 SS G_CDS: -4.62 Total: 16.38 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -33.48 -8.63 -42.12 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001275515589.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.043 kcal
(2) G-P(sol) polarization free energy of solvation -33.483 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.560 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal
(6) G-S(sol) free energy of system = (1) + (5) 71.927 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds