Wall clock time and date at job start Sat Apr 11 2020 06:53:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 C 1.34489 * 126.83104 * 2 1
4 4 N 1.36448 * 108.85229 * 179.97438 * 3 2 1
5 5 H 0.96997 * 124.84895 * 180.02562 * 4 3 2
6 6 C 1.34663 * 110.29932 * 359.73399 * 4 3 2
7 7 C 1.36773 * 108.39667 * 0.43922 * 6 4 3
8 8 C 1.47255 * 126.94261 * 179.83266 * 7 6 4
9 9 O 1.21627 * 120.00296 * 172.96734 * 8 7 6
10 10 N 1.34783 * 120.00044 * 352.97475 * 8 7 6
11 11 C 1.49863 * 127.93255 * 182.31839 * 10 8 7
12 12 C 1.54944 * 103.40314 * 219.93525 * 11 10 8
13 13 C 1.54573 * 102.85797 * 322.44938 * 12 11 10
14 14 H 1.09007 * 118.12706 * 242.38526 * 13 12 11
15 15 C 1.52940 * 118.20385 * 85.42467 * 13 12 11
16 16 C 1.47525 * 127.04327 * 3.14141 * 10 8 7
17 17 C 1.50704 * 117.36666 * 295.06187 * 16 10 8
18 18 O 1.21286 * 119.99620 * 174.01793 * 17 16 10
19 19 N 1.34772 * 120.00144 * 354.01479 * 17 16 10
20 20 C 1.47582 * 134.49319 * 175.07676 * 19 17 16
21 21 C 1.53946 * 86.11682 * 155.35902 * 20 19 17
22 22 C 1.50703 * 113.74190 * 137.95702 * 21 20 19
23 23 H 1.07996 * 119.99750 * 359.97438 * 22 21 20
24 24 C 1.37869 * 119.99713 * 180.02562 * 22 21 20
25 25 N 1.31525 * 119.99734 * 179.97438 * 24 22 21
26 26 Si 1.86803 * 120.00566 * 359.97438 * 24 22 21
27 27 H 1.48500 * 109.47007 * 90.00126 * 26 24 22
28 28 H 1.48496 * 109.46665 * 330.00402 * 26 24 22
29 29 H 1.48499 * 109.47294 * 210.00024 * 26 24 22
30 30 C 1.47580 * 134.49418 * 355.07371 * 19 17 16
31 31 H 1.08998 * 109.46688 * 270.03728 * 1 2 3
32 32 H 1.08999 * 109.46879 * 30.03814 * 1 2 3
33 33 H 1.08997 * 109.47203 * 150.03563 * 1 2 3
34 34 H 1.07995 * 125.57131 * 359.97438 * 3 2 1
35 35 H 1.07998 * 125.80058 * 180.30351 * 6 4 3
36 36 H 1.08999 * 110.69737 * 101.39664 * 11 10 8
37 37 H 1.09000 * 110.49072 * 338.37737 * 11 10 8
38 38 H 1.08991 * 110.73784 * 204.10435 * 12 11 10
39 39 H 1.09000 * 110.89026 * 80.85815 * 12 11 10
40 40 H 1.08995 * 117.45566 * 160.76647 * 15 13 12
41 41 H 1.09001 * 117.45014 * 15.99395 * 15 13 12
42 42 H 1.09004 * 113.76695 * 41.06013 * 20 19 17
43 43 H 1.08993 * 113.77274 * 269.66045 * 20 19 17
44 44 H 1.09003 * 113.74263 * 269.15174 * 21 20 19
45 45 H 0.97001 * 119.99647 * 180.02562 * 25 24 22
46 46 H 1.08995 * 113.76958 * 90.34113 * 30 19 17
47 47 H 1.08999 * 113.76844 * 318.94402 * 30 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3133 1.0765 0.0000
4 7 3.6111 0.6553 0.0006
5 1 4.3840 1.2414 0.0011
6 6 3.6656 -0.6902 0.0068
7 6 2.3864 -1.1741 0.0005
8 6 1.9750 -2.5880 0.0006
9 8 0.8006 -2.8797 0.1235
10 7 2.8998 -3.5590 -0.1355
11 6 2.6777 -5.0393 -0.2071
12 6 3.8434 -5.6185 0.6333
13 6 5.0212 -4.6823 0.2790
14 1 5.8913 -5.1153 -0.2146
15 6 5.1730 -3.3812 1.0684
16 6 4.3619 -3.3868 -0.2296
17 6 4.8975 -2.6589 -1.4356
18 8 6.0790 -2.3949 -1.5093
19 7 4.0637 -2.3013 -2.4322
20 6 4.2137 -1.5235 -3.6774
21 6 3.0017 -2.3182 -4.1964
22 6 2.0058 -1.4793 -4.9551
23 1 2.1814 -0.4222 -5.0893
24 6 0.8701 -2.0613 -5.4770
25 7 0.0008 -1.3291 -6.1387
26 14 0.5660 -3.8896 -5.2443
27 1 -0.1986 -4.1086 -3.9902
28 1 1.8668 -4.6011 -5.1615
29 1 -0.2119 -4.4126 -6.3960
30 6 2.6338 -2.5303 -2.7167
31 1 -0.3632 0.0007 1.0277
32 1 -0.3633 0.8896 -0.5144
33 1 -0.3633 -0.8903 -0.5133
34 1 1.9868 2.1059 -0.0004
35 1 4.5664 -1.2860 0.0133
36 1 2.7364 -5.3883 -1.2381
37 1 1.7168 -5.3028 0.2350
38 1 4.0621 -6.6437 0.3349
39 1 3.6173 -5.5680 1.6984
40 1 6.1474 -2.8930 1.0501
41 1 4.6220 -3.2944 2.0048
42 1 5.1384 -1.7309 -4.2162
43 1 4.0208 -0.4577 -3.5557
44 1 3.2701 -3.2361 -4.7196
45 1 -0.7985 -1.7384 -6.5056
46 1 1.9766 -1.7603 -2.3127
47 1 2.2969 -3.5415 -2.4884
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001275515589.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:17
Heat of formation + Delta-G solvation = 50.442765 kcal
Electronic energy + Delta-G solvation = -32718.844122 eV
Core-core repulsion = 28676.807661 eV
Total energy + Delta-G solvation = -4042.036461 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-42.73218 -41.54287 -40.34974 -39.43859 -38.28701 -34.72705 -33.85326 -33.38581
-32.64969 -31.26757 -30.12503 -27.69866 -27.44265 -27.01984 -25.55661 -24.38595
-23.17457 -22.30348 -21.56391 -21.10489 -20.19177 -19.37439 -19.23695 -18.84272
-17.93715 -17.57020 -16.91508 -16.79444 -16.42639 -15.97390 -15.84911 -15.52102
-15.17336 -14.97601 -14.84930 -14.68571 -14.36715 -14.16013 -14.04305 -13.84208
-13.69137 -13.60057 -13.51757 -13.37462 -13.29099 -12.93091 -12.85223 -12.55586
-12.36952 -12.11379 -11.96979 -11.85591 -11.63167 -11.50150 -11.36795 -11.01830
-10.80679 -10.70450 -9.86245 -9.69850 -9.48578 -9.18950 -8.32945 -6.37964
0.69550 1.19839 1.30561 1.34659 1.39416 1.46806 1.68172 1.79532
2.30300 2.38387 2.45159 2.52007 2.98502 3.15385 3.30617 3.50406
3.75107 3.88562 3.96325 4.03342 4.10943 4.19390 4.21771 4.25762
4.35680 4.36741 4.46481 4.49884 4.58142 4.63694 4.68214 4.71092
4.73482 4.82269 4.84277 4.88465 4.92086 4.96370 5.06544 5.16823
5.28283 5.28600 5.31030 5.55986 5.80245 5.92713 6.22041 6.39733
6.60633 6.63479 6.71864 7.01332 7.17155 7.28037 8.82526
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.009602 B = 0.006052 C = 0.005209
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2915.488838 B = 4625.368025 C = 5373.662358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 C -0.146 4.146
3 C -0.005 4.005
4 N -0.534 5.534
5 H 0.433 0.567
6 C 0.052 3.948
7 C -0.250 4.250
8 C 0.611 3.389
9 O -0.578 6.578
10 N -0.594 5.594
11 C 0.095 3.905
12 C -0.091 4.091
13 C -0.099 4.099
14 H 0.144 0.856
15 C -0.104 4.104
16 C 0.002 3.998
17 C 0.566 3.434
18 O -0.575 6.575
19 N -0.620 5.620
20 C 0.128 3.872
21 C -0.019 4.019
22 C -0.507 4.507
23 H 0.045 0.955
24 C 0.028 3.972
25 N -0.937 5.937
26 Si 0.922 3.078
27 H -0.277 1.277
28 H -0.241 1.241
29 H -0.281 1.281
30 C 0.117 3.883
31 H 0.070 0.930
32 H 0.072 0.928
33 H 0.039 0.961
34 H 0.203 0.797
35 H 0.176 0.824
36 H 0.069 0.931
37 H 0.086 0.914
38 H 0.121 0.879
39 H 0.096 0.904
40 H 0.128 0.872
41 H 0.119 0.881
42 H 0.081 0.919
43 H 0.075 0.925
44 H 0.065 0.935
45 H 0.267 0.733
46 H 0.068 0.932
47 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.989 -3.750 17.783 21.238
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.152 4.152
3 C -0.133 4.133
4 N -0.128 5.128
5 H 0.272 0.728
6 C -0.086 4.086
7 C -0.261 4.261
8 C 0.405 3.595
9 O -0.459 6.459
10 N -0.328 5.328
11 C -0.025 4.025
12 C -0.129 4.129
13 C -0.118 4.118
14 H 0.162 0.838
15 C -0.142 4.142
16 C -0.088 4.088
17 C 0.356 3.644
18 O -0.456 6.456
19 N -0.352 5.352
20 C 0.006 3.994
21 C -0.039 4.039
22 C -0.545 4.545
23 H 0.064 0.936
24 C -0.171 4.171
25 N -0.576 5.576
26 Si 0.747 3.253
27 H -0.203 1.203
28 H -0.164 1.164
29 H -0.207 1.207
30 C -0.007 4.007
31 H 0.088 0.912
32 H 0.091 0.909
33 H 0.058 0.942
34 H 0.220 0.780
35 H 0.192 0.808
36 H 0.087 0.913
37 H 0.104 0.896
38 H 0.140 0.860
39 H 0.114 0.886
40 H 0.146 0.854
41 H 0.138 0.862
42 H 0.099 0.901
43 H 0.093 0.907
44 H 0.083 0.917
45 H 0.076 0.924
46 H 0.086 0.914
47 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 10.924 -3.629 17.826 21.219
hybrid contribution -0.597 -0.148 -0.611 0.867
sum 10.327 -3.776 17.215 20.427
Atomic orbital electron populations
1.20053 0.89755 1.01642 1.01634 1.20755 0.95928 0.91176 1.07379
1.21983 0.82020 0.99925 1.09419 1.41504 1.08846 1.06111 1.56382
0.72753 1.22375 0.98143 0.84825 1.03241 1.20250 0.93877 0.92006
1.19950 1.17303 0.83704 0.84378 0.74144 1.90721 1.18325 1.83936
1.52930 1.48529 1.03940 1.07310 1.73017 1.23181 1.01087 0.77291
1.00955 1.22441 0.89837 0.99554 1.01021 1.24028 0.99774 0.87370
1.00600 0.83782 1.23690 1.00492 0.97789 0.92241 1.21762 0.81395
1.09345 0.96322 1.19285 0.84874 0.78736 0.81513 1.90682 1.15825
1.59251 1.79886 1.50018 1.11447 1.52007 1.21698 1.23098 0.98884
0.95901 0.81494 1.21045 0.94046 0.96915 0.91898 1.20931 1.04565
0.95445 1.33568 0.93648 1.25682 0.95610 1.01880 0.93902 1.70010
1.12072 1.37978 1.37553 0.86081 0.79693 0.81568 0.77980 1.20262
1.16433 1.20668 1.23595 0.81431 0.99157 0.96487 0.91161 0.90869
0.94196 0.78007 0.80762 0.91253 0.89572 0.86026 0.88550 0.85363
0.86248 0.90087 0.90691 0.91728 0.92388 0.91386 0.92889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -2.44 9.93 71.24 0.71 -1.73 16
2 C -0.15 -4.87 6.35 -18.51 -0.12 -4.98 16
3 C -0.01 -0.14 11.82 83.12 0.98 0.85 16
4 N -0.53 -12.46 5.90 -194.55 -1.15 -13.61 16
5 H 0.43 6.87 8.96 -92.71 -0.83 6.04 16
6 C 0.05 1.51 9.30 83.92 0.78 2.29 16
7 C -0.25 -8.73 4.30 -19.04 -0.08 -8.81 16
8 C 0.61 22.96 5.44 86.61 0.47 23.43 16
9 O -0.58 -25.56 15.72 -4.12 -0.06 -25.63 16
10 N -0.59 -18.17 1.81 -766.18 -1.39 -19.56 16
11 C 0.10 2.36 6.85 86.39 0.59 2.95 16
12 C -0.09 -1.37 6.86 31.79 0.22 -1.15 16
13 C -0.10 -1.76 6.92 -9.94 -0.07 -1.82 16
14 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16
15 C -0.10 -1.89 8.90 30.60 0.27 -1.62 16
16 C 0.00 0.06 1.24 3.02 0.00 0.06 16
17 C 0.57 18.73 4.96 87.66 0.43 19.16 16
18 O -0.57 -20.49 17.27 -3.05 -0.05 -20.54 16
19 N -0.62 -23.19 2.87 -836.81 -2.41 -25.60 16
20 C 0.13 5.04 8.39 86.48 0.73 5.77 16
21 C -0.02 -0.88 2.90 -10.88 -0.03 -0.92 16
22 C -0.51 -27.85 9.32 25.60 0.24 -27.61 16
23 H 0.05 2.73 8.06 -2.91 -0.02 2.71 16
24 C 0.03 1.62 5.47 84.65 0.46 2.08 16
25 N -0.94 -57.28 13.96 21.45 0.30 -56.98 16
26 Si 0.92 43.93 27.17 68.60 1.86 45.79 16
27 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16
28 H -0.24 -10.46 6.25 99.48 0.62 -9.84 16
29 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
30 C 0.12 4.98 4.53 86.48 0.39 5.38 16
31 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16
32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
33 H 0.04 1.60 7.00 -2.39 -0.02 1.58 16
34 H 0.20 3.54 8.06 -2.91 -0.02 3.52 16
35 H 0.18 4.92 3.36 -2.91 -0.01 4.91 16
36 H 0.07 1.79 7.77 -2.39 -0.02 1.78 16
37 H 0.09 2.22 7.91 -2.39 -0.02 2.20 16
38 H 0.12 1.17 8.14 -2.39 -0.02 1.16 16
39 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16
40 H 0.13 2.15 7.93 -2.39 -0.02 2.13 16
41 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16
42 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16
43 H 0.07 3.00 8.09 -2.39 -0.02 2.98 16
44 H 0.06 2.91 6.57 -2.39 -0.02 2.89 16
45 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16
46 H 0.07 3.28 6.08 -2.39 -0.01 3.27 16
47 H 0.05 2.27 6.60 -2.39 -0.02 2.26 16
Total: -1.00 -76.47 370.35 3.19 -73.28
By element:
Atomic # 1 Polarization: 29.41 SS G_CDS: 0.10 Total: 29.51 kcal
Atomic # 6 Polarization: 7.34 SS G_CDS: 5.98 Total: 13.32 kcal
Atomic # 7 Polarization: -111.11 SS G_CDS: -4.64 Total: -115.75 kcal
Atomic # 8 Polarization: -46.05 SS G_CDS: -0.12 Total: -46.16 kcal
Atomic # 14 Polarization: 43.93 SS G_CDS: 1.86 Total: 45.79 kcal
Total: -76.47 3.19 -73.28 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001275515589.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.724 kcal
(2) G-P(sol) polarization free energy of solvation -76.471 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.282 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds