Wall clock time and date at job start Sat Apr 11 2020 06:54:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30252 * 125.62081 * 2 1
4 4 C 1.34478 * 108.70534 * 179.73503 * 3 2 1
5 5 C 1.34331 * 107.66364 * 0.39364 * 4 3 2
6 6 C 1.50701 * 126.44306 * 179.87598 * 5 4 3
7 7 C 1.50703 * 109.47064 * 89.71099 * 6 5 4
8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5
9 9 N 1.34779 * 119.99944 * 180.02562 * 7 6 5
10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6
11 11 C 1.50701 * 109.46992 * 179.97438 * 10 9 7
12 12 C 1.38233 * 120.00099 * 269.72651 * 11 10 9
13 13 C 1.38239 * 119.99655 * 179.76882 * 12 11 10
14 14 C 1.38228 * 120.00132 * 0.48003 * 13 12 11
15 15 C 1.50705 * 120.00130 * 179.77080 * 14 13 12
16 16 C 1.53001 * 109.46863 * 270.02646 * 15 14 13
17 17 N 1.46500 * 109.46629 * 180.02562 * 16 15 14
18 18 C 1.36944 * 119.99853 * 180.02562 * 17 16 15
19 19 H 1.08001 * 119.99595 * 359.97438 * 18 17 16
20 20 C 1.38809 * 119.99897 * 179.97438 * 18 17 16
21 21 N 1.31612 * 120.00171 * 359.97438 * 20 18 17
22 22 Si 1.86804 * 119.99800 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.46951 * 89.99674 * 22 20 18
24 24 H 1.48500 * 109.47313 * 209.99989 * 22 20 18
25 25 H 1.48501 * 109.46991 * 330.00030 * 22 20 18
26 26 C 1.38237 * 120.00223 * 359.79707 * 14 13 12
27 27 C 1.38238 * 119.99946 * 359.94921 * 26 14 13
28 28 O 1.33965 * 125.61910 * 179.97438 * 2 1 3
29 29 H 1.09005 * 109.47080 * 270.02356 * 1 2 3
30 30 H 1.08997 * 109.47629 * 30.02478 * 1 2 3
31 31 H 1.09001 * 109.47600 * 150.02642 * 1 2 3
32 32 H 1.07993 * 126.17258 * 180.27013 * 4 3 2
33 33 H 1.09002 * 109.47060 * 329.71135 * 6 5 4
34 34 H 1.09001 * 109.47380 * 209.71048 * 6 5 4
35 35 H 0.97000 * 119.99708 * 359.97438 * 9 7 6
36 36 H 1.09002 * 109.47391 * 59.99686 * 10 9 7
37 37 H 1.09001 * 109.46813 * 299.99742 * 10 9 7
38 38 H 1.08003 * 119.99927 * 359.97438 * 12 11 10
39 39 H 1.08001 * 119.99208 * 180.25033 * 13 12 11
40 40 H 1.09001 * 109.46742 * 30.02239 * 15 14 13
41 41 H 1.08992 * 109.47420 * 150.02142 * 15 14 13
42 42 H 1.09001 * 109.47109 * 299.99368 * 16 15 14
43 43 H 1.08992 * 109.47514 * 59.99554 * 16 15 14
44 44 H 0.96995 * 120.00603 * 359.97438 * 17 16 15
45 45 H 0.97010 * 119.99987 * 179.97438 * 21 20 18
46 46 H 1.07998 * 120.00143 * 179.97438 * 26 14 13
47 47 H 1.07991 * 120.00062 * 180.02562 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5522 0.6675 0.0059
5 6 3.5697 -0.6757 0.0008
6 6 4.7936 -1.5549 0.0018
7 6 5.2007 -1.8477 1.4230
8 8 4.5597 -1.3880 2.3442
9 7 6.2770 -2.6203 1.6701
10 6 6.6723 -2.9053 3.0517
11 6 7.8963 -3.7845 3.0527
12 6 7.7593 -5.1600 3.0581
13 6 8.8821 -5.9664 3.0542
14 6 10.1418 -5.3973 3.0549
15 6 11.3659 -6.2764 3.0559
16 6 11.7788 -6.5742 4.4987
17 7 12.9690 -7.4283 4.4996
18 6 13.5239 -7.8282 5.6860
19 1 13.0841 -7.5137 6.6210
20 6 14.6513 -8.6379 5.6869
21 7 15.1868 -9.0217 4.5475
22 14 15.4086 -9.1829 7.3052
23 1 14.7925 -10.4645 7.7333
24 1 16.8710 -9.3712 7.1290
25 1 15.1641 -8.1463 8.3401
26 6 10.2789 -4.0218 3.0553
27 6 9.1561 -3.2153 3.0539
28 8 2.2872 -1.0890 0.0005
29 1 -0.3633 0.0004 1.0277
30 1 -0.3634 0.8897 -0.5142
31 1 -0.3634 -0.8902 -0.5134
32 1 4.4156 1.3161 0.0115
33 1 5.6083 -1.0442 -0.5116
34 1 4.5698 -2.4899 -0.5119
35 1 6.7894 -2.9882 0.9333
36 1 5.8577 -3.4166 3.5647
37 1 6.8956 -1.9705 3.5659
38 1 6.7751 -5.6047 3.0621
39 1 8.7750 -7.0411 3.0544
40 1 11.1422 -7.2112 2.5417
41 1 12.1806 -5.7656 2.5429
42 1 12.0024 -5.6394 5.0129
43 1 10.9641 -7.0850 5.0118
44 1 13.3637 -7.7111 3.6600
45 1 15.9750 -9.5872 4.5481
46 1 11.2631 -3.5771 3.0562
47 1 9.2631 -2.1407 3.0537
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001567183197.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:03
Heat of formation + Delta-G solvation = 12.196970 kcal
Electronic energy + Delta-G solvation = -27090.948559 eV
Core-core repulsion = 23047.253637 eV
Total energy + Delta-G solvation = -4043.694923 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-43.70536 -40.26314 -39.36481 -35.92567 -35.11288 -34.81775 -33.67083 -32.84070
-31.28377 -30.99765 -30.64114 -28.56868 -26.65914 -25.35464 -23.51799 -22.79212
-22.78116 -21.76143 -21.56334 -20.87620 -20.50333 -18.05830 -17.46676 -17.19684
-16.81447 -16.55073 -16.17480 -15.59464 -15.48385 -15.05380 -14.81021 -14.66483
-14.45806 -14.05237 -13.76634 -13.60332 -13.56017 -13.48600 -13.39973 -13.29745
-13.10375 -12.89879 -12.58019 -12.43483 -12.38240 -11.61747 -11.27208 -11.23761
-11.13340 -10.91797 -10.91375 -10.72341 -10.63249 -10.46434 -10.09113 -9.74118
-9.51833 -9.07980 -8.98813 -8.88463 -8.61605 -6.95147 -5.78746 -3.07789
0.97191 1.16316 1.35295 2.12239 2.18635 2.31888 2.90677 3.42537
3.47682 3.49409 3.64271 3.73640 4.10885 4.32806 4.43595 4.50455
4.57773 4.58523 4.70063 4.75252 4.89490 4.92355 4.99151 4.99773
5.07380 5.10919 5.36452 5.43945 5.46475 5.49819 5.57006 5.58553
5.72450 5.81200 5.87147 5.94115 5.95164 6.03244 6.16208 6.24348
6.40567 6.43544 6.57093 6.78198 6.89459 6.94186 7.02791 7.34964
7.68429 7.73941 8.40153 9.51364 10.08344 10.43258 11.44187
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.046328 B = 0.001285 C = 0.001282
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 604.243185 B =21780.715584 C =21830.425660
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C 0.192 3.808
3 N -0.485 5.485
4 C -0.021 4.021
5 C -0.032 4.032
6 C -0.055 4.055
7 C 0.512 3.488
8 O -0.530 6.530
9 N -0.722 5.722
10 C 0.166 3.834
11 C -0.129 4.129
12 C -0.098 4.098
13 C -0.118 4.118
14 C -0.051 4.051
15 C -0.095 4.095
16 C 0.161 3.839
17 N -0.734 5.734
18 C -0.241 4.241
19 H 0.070 0.930
20 C -0.013 4.013
21 N -0.934 5.934
22 Si 0.907 3.093
23 H -0.289 1.289
24 H -0.291 1.291
25 H -0.282 1.282
26 C -0.118 4.118
27 C -0.098 4.098
28 O -0.197 6.197
29 H 0.094 0.906
30 H 0.101 0.899
31 H 0.088 0.912
32 H 0.183 0.817
33 H 0.129 0.871
34 H 0.115 0.885
35 H 0.404 0.596
36 H 0.075 0.925
37 H 0.076 0.924
38 H 0.120 0.880
39 H 0.125 0.875
40 H 0.074 0.926
41 H 0.074 0.926
42 H 0.020 0.980
43 H 0.020 0.980
44 H 0.384 0.616
45 H 0.255 0.745
46 H 0.125 0.875
47 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.478 17.176 -14.235 34.623
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.014 4.014
3 N -0.215 5.215
4 C -0.160 4.160
5 C -0.085 4.085
6 C -0.095 4.095
7 C 0.297 3.703
8 O -0.406 6.406
9 N -0.375 5.375
10 C 0.043 3.957
11 C -0.129 4.129
12 C -0.117 4.117
13 C -0.136 4.136
14 C -0.051 4.051
15 C -0.133 4.133
16 C 0.033 3.967
17 N -0.378 5.378
18 C -0.372 4.372
19 H 0.088 0.912
20 C -0.209 4.209
21 N -0.583 5.583
22 Si 0.738 3.262
23 H -0.217 1.217
24 H -0.217 1.217
25 H -0.207 1.207
26 C -0.136 4.136
27 C -0.117 4.117
28 O -0.084 6.084
29 H 0.112 0.888
30 H 0.120 0.880
31 H 0.107 0.893
32 H 0.200 0.800
33 H 0.147 0.853
34 H 0.134 0.866
35 H 0.239 0.761
36 H 0.093 0.907
37 H 0.094 0.906
38 H 0.138 0.862
39 H 0.143 0.857
40 H 0.092 0.908
41 H 0.092 0.908
42 H 0.038 0.962
43 H 0.037 0.963
44 H 0.217 0.783
45 H 0.065 0.935
46 H 0.143 0.857
47 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -27.172 18.064 -13.363 35.259
hybrid contribution 1.329 -1.344 0.360 1.924
sum -25.842 16.720 -13.003 33.414
Atomic orbital electron populations
1.20275 0.81253 1.05095 1.04864 1.26282 0.96456 0.78567 1.00114
1.70440 1.02045 1.30299 1.18700 1.22992 0.95195 0.92722 1.05115
1.22407 0.83185 0.94763 1.08159 1.20043 0.92478 1.00976 0.96036
1.20370 0.80449 0.78633 0.90841 1.90773 1.52862 1.50854 1.46100
1.46076 1.30020 1.52013 1.09350 1.20175 0.94325 0.98592 0.82568
1.19682 0.93949 0.93886 1.05406 1.21015 0.98669 0.92740 0.99251
1.21131 0.91808 1.00174 1.00508 1.20098 0.95173 0.94099 0.95765
1.20881 0.94178 0.98547 0.99648 1.20585 0.90130 0.93986 0.91974
1.42368 1.30051 1.58927 1.06500 1.19240 1.07348 1.24477 0.86108
0.91170 1.24738 0.98593 1.00706 0.96889 1.69659 1.24169 1.40453
1.23996 0.86183 0.78426 0.78565 0.82995 1.21676 1.21709 1.20725
1.21134 0.98811 0.93176 1.00496 1.21013 0.91774 0.99620 0.99250
1.84348 1.16452 1.37832 1.69805 0.88795 0.88039 0.89320 0.80015
0.85300 0.86642 0.76108 0.90652 0.90567 0.86178 0.85676 0.90761
0.90750 0.96245 0.96254 0.78281 0.93492 0.85662 0.86141
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.25 10.51 36.00 0.38 0.13 16
2 C 0.19 1.77 8.34 -12.95 -0.11 1.66 16
3 N -0.49 -5.30 11.29 -11.11 -0.13 -5.43 16
4 C -0.02 -0.20 11.80 -17.77 -0.21 -0.41 16
5 C -0.03 -0.28 5.88 -35.69 -0.21 -0.49 16
6 C -0.06 -0.29 6.25 -29.03 -0.18 -0.48 16
7 C 0.51 4.34 7.82 -10.98 -0.09 4.26 16
8 O -0.53 -7.05 16.03 5.56 0.09 -6.96 16
9 N -0.72 -4.90 5.55 -61.47 -0.34 -5.25 16
10 C 0.17 1.41 5.80 -5.19 -0.03 1.38 16
11 C -0.13 -1.20 5.25 -104.62 -0.55 -1.75 16
12 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16
13 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16
14 C -0.05 -0.66 5.13 -104.62 -0.54 -1.20 16
15 C -0.09 -1.48 5.46 -27.88 -0.15 -1.63 16
16 C 0.16 3.22 6.24 -4.04 -0.03 3.20 16
17 N -0.73 -18.65 5.60 -59.91 -0.34 -18.98 16
18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16
19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16
20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16
21 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16
22 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16
23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
26 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16
27 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16
28 O -0.20 -1.99 10.78 5.36 0.06 -1.93 16
29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16
30 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16
32 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16
33 H 0.13 0.27 8.14 -51.93 -0.42 -0.16 16
34 H 0.12 0.38 8.14 -51.93 -0.42 -0.05 16
35 H 0.40 1.81 8.46 -40.82 -0.35 1.46 16
36 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16
37 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16
38 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16
39 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16
40 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16
41 H 0.07 1.14 8.08 -51.93 -0.42 0.73 16
42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
44 H 0.38 10.12 7.67 -40.82 -0.31 9.81 16
45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
46 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16
47 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
LS Contribution 407.87 15.07 6.15 6.15
Total: -1.00 -36.97 407.87 -9.26 -46.23
By element:
Atomic # 1 Polarization: 12.24 SS G_CDS: -6.96 Total: 5.28 kcal
Atomic # 6 Polarization: -5.52 SS G_CDS: -3.49 Total: -9.02 kcal
Atomic # 7 Polarization: -57.05 SS G_CDS: -0.08 Total: -57.13 kcal
Atomic # 8 Polarization: -9.04 SS G_CDS: 0.15 Total: -8.89 kcal
Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -36.97 -9.26 -46.23 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567183197.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.429 kcal
(2) G-P(sol) polarization free energy of solvation -36.974 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.455 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.232 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.197 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds