Wall clock time and date at job start Sat Apr 11 2020 06:54:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.30252 * 125.62081 * 2 1
4 4 C 1.34478 * 108.70534 * 179.73503 * 3 2 1
5 5 C 1.34331 * 107.66364 * 0.39364 * 4 3 2
6 6 C 1.50701 * 126.44306 * 179.87598 * 5 4 3
7 7 C 1.50703 * 109.47064 * 89.71099 * 6 5 4
8 8 O 1.21278 * 119.99985 * 0.02562 * 7 6 5
9 9 N 1.34779 * 119.99944 * 180.02562 * 7 6 5
10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 6
11 11 C 1.50701 * 109.46992 * 179.97438 * 10 9 7
12 12 C 1.38233 * 120.00099 * 269.72651 * 11 10 9
13 13 C 1.38239 * 119.99655 * 179.76882 * 12 11 10
14 14 C 1.38228 * 120.00132 * 0.48003 * 13 12 11
15 15 C 1.50705 * 120.00130 * 179.77080 * 14 13 12
16 16 C 1.53001 * 109.46863 * 270.02646 * 15 14 13
17 17 N 1.46500 * 109.46629 * 180.02562 * 16 15 14
18 18 C 1.36944 * 119.99853 * 180.02562 * 17 16 15
19 19 H 1.08001 * 119.99595 * 359.97438 * 18 17 16
20 20 C 1.38809 * 119.99897 * 179.97438 * 18 17 16
21 21 N 1.31612 * 120.00171 * 359.97438 * 20 18 17
22 22 Si 1.86804 * 119.99800 * 179.97438 * 20 18 17
23 23 H 1.48500 * 109.46951 * 89.99674 * 22 20 18
24 24 H 1.48500 * 109.47313 * 209.99989 * 22 20 18
25 25 H 1.48501 * 109.46991 * 330.00030 * 22 20 18
26 26 C 1.38237 * 120.00223 * 359.79707 * 14 13 12
27 27 C 1.38238 * 119.99946 * 359.94921 * 26 14 13
28 28 O 1.33965 * 125.61910 * 179.97438 * 2 1 3
29 29 H 1.09005 * 109.47080 * 270.02356 * 1 2 3
30 30 H 1.08997 * 109.47629 * 30.02478 * 1 2 3
31 31 H 1.09001 * 109.47600 * 150.02642 * 1 2 3
32 32 H 1.07993 * 126.17258 * 180.27013 * 4 3 2
33 33 H 1.09002 * 109.47060 * 329.71135 * 6 5 4
34 34 H 1.09001 * 109.47380 * 209.71048 * 6 5 4
35 35 H 0.97000 * 119.99708 * 359.97438 * 9 7 6
36 36 H 1.09002 * 109.47391 * 59.99686 * 10 9 7
37 37 H 1.09001 * 109.46813 * 299.99742 * 10 9 7
38 38 H 1.08003 * 119.99927 * 359.97438 * 12 11 10
39 39 H 1.08001 * 119.99208 * 180.25033 * 13 12 11
40 40 H 1.09001 * 109.46742 * 30.02239 * 15 14 13
41 41 H 1.08992 * 109.47420 * 150.02142 * 15 14 13
42 42 H 1.09001 * 109.47109 * 299.99368 * 16 15 14
43 43 H 1.08992 * 109.47514 * 59.99554 * 16 15 14
44 44 H 0.96995 * 120.00603 * 359.97438 * 17 16 15
45 45 H 0.97010 * 119.99987 * 179.97438 * 21 20 18
46 46 H 1.07998 * 120.00143 * 179.97438 * 26 14 13
47 47 H 1.07991 * 120.00062 * 180.02562 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5522 0.6675 0.0059
5 6 3.5697 -0.6757 0.0008
6 6 4.7936 -1.5549 0.0018
7 6 5.2007 -1.8477 1.4230
8 8 4.5597 -1.3880 2.3442
9 7 6.2770 -2.6203 1.6701
10 6 6.6723 -2.9053 3.0517
11 6 7.8963 -3.7845 3.0527
12 6 7.7593 -5.1600 3.0581
13 6 8.8821 -5.9664 3.0542
14 6 10.1418 -5.3973 3.0549
15 6 11.3659 -6.2764 3.0559
16 6 11.7788 -6.5742 4.4987
17 7 12.9690 -7.4283 4.4996
18 6 13.5239 -7.8282 5.6860
19 1 13.0841 -7.5137 6.6210
20 6 14.6513 -8.6379 5.6869
21 7 15.1868 -9.0217 4.5475
22 14 15.4086 -9.1829 7.3052
23 1 14.7925 -10.4645 7.7333
24 1 16.8710 -9.3712 7.1290
25 1 15.1641 -8.1463 8.3401
26 6 10.2789 -4.0218 3.0553
27 6 9.1561 -3.2153 3.0539
28 8 2.2872 -1.0890 0.0005
29 1 -0.3633 0.0004 1.0277
30 1 -0.3634 0.8897 -0.5142
31 1 -0.3634 -0.8902 -0.5134
32 1 4.4156 1.3161 0.0115
33 1 5.6083 -1.0442 -0.5116
34 1 4.5698 -2.4899 -0.5119
35 1 6.7894 -2.9882 0.9333
36 1 5.8577 -3.4166 3.5647
37 1 6.8956 -1.9705 3.5659
38 1 6.7751 -5.6047 3.0621
39 1 8.7750 -7.0411 3.0544
40 1 11.1422 -7.2112 2.5417
41 1 12.1806 -5.7656 2.5429
42 1 12.0024 -5.6394 5.0129
43 1 10.9641 -7.0850 5.0118
44 1 13.3637 -7.7111 3.6600
45 1 15.9750 -9.5872 4.5481
46 1 11.2631 -3.5771 3.0562
47 1 9.2631 -2.1407 3.0537
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001567183197.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:02
Heat of formation + Delta-G solvation = -14.366153 kcal
Electronic energy + Delta-G solvation = -27092.100423 eV
Core-core repulsion = 23047.253637 eV
Total energy + Delta-G solvation = -4044.846786 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 343.168 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-44.34304 -40.99870 -40.20824 -37.23039 -36.05871 -35.79017 -34.39853 -34.09819
-32.60089 -31.84062 -31.43009 -29.80651 -27.50589 -26.42779 -25.07929 -23.63660
-23.48739 -23.11202 -22.31377 -21.61344 -21.43386 -19.22864 -18.68534 -18.08084
-17.50251 -17.25980 -16.92641 -16.80629 -16.37839 -16.28584 -15.84392 -15.43788
-15.35842 -15.14303 -15.10292 -14.90874 -14.67480 -14.30755 -14.10057 -13.84196
-13.77099 -13.70952 -13.50363 -13.30138 -13.02101 -12.95462 -12.86900 -12.51759
-12.36586 -12.31184 -12.14495 -12.02671 -11.80132 -11.69077 -11.59922 -11.21429
-10.95931 -10.18717 -9.81813 -9.71765 -9.52834 -9.03532 -7.97508 -5.27170
0.22850 0.41231 0.50801 1.46981 1.48611 1.53013 1.57267 1.58509
1.69709 2.27464 2.54676 2.89177 3.15370 3.36285 3.58694 3.62392
3.81407 3.87655 3.90547 4.04034 4.13310 4.15014 4.18898 4.37821
4.38580 4.45390 4.49449 4.56850 4.61524 4.65229 4.67000 4.72228
4.75022 4.78724 5.00882 5.03083 5.06954 5.11324 5.25401 5.26788
5.31662 5.37318 5.45371 5.49847 5.61814 5.78948 6.07098 6.25061
6.47489 6.70455 7.15919 7.31348 8.05692 8.30102 9.25941
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.046328 B = 0.001285 C = 0.001282
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 604.243185 B =21780.715584 C =21830.425660
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C 0.184 3.816
3 N -0.520 5.520
4 C -0.043 4.043
5 C -0.041 4.041
6 C -0.047 4.047
7 C 0.513 3.487
8 O -0.584 6.584
9 N -0.708 5.708
10 C 0.170 3.830
11 C -0.114 4.114
12 C -0.096 4.096
13 C -0.126 4.126
14 C -0.071 4.071
15 C -0.079 4.079
16 C 0.161 3.839
17 N -0.747 5.747
18 C -0.251 4.251
19 H 0.073 0.927
20 C -0.072 4.072
21 N -0.968 5.968
22 Si 0.974 3.026
23 H -0.285 1.285
24 H -0.292 1.292
25 H -0.270 1.270
26 C -0.126 4.126
27 C -0.094 4.094
28 O -0.212 6.212
29 H 0.103 0.897
30 H 0.112 0.888
31 H 0.108 0.892
32 H 0.199 0.801
33 H 0.167 0.833
34 H 0.142 0.858
35 H 0.419 0.581
36 H 0.070 0.930
37 H 0.073 0.927
38 H 0.139 0.861
39 H 0.126 0.874
40 H 0.072 0.928
41 H 0.072 0.928
42 H 0.017 0.983
43 H 0.017 0.983
44 H 0.375 0.625
45 H 0.253 0.747
46 H 0.127 0.873
47 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.589 17.698 -14.629 35.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C -0.023 4.023
3 N -0.251 5.251
4 C -0.181 4.181
5 C -0.094 4.094
6 C -0.087 4.087
7 C 0.300 3.700
8 O -0.464 6.464
9 N -0.361 5.361
10 C 0.047 3.953
11 C -0.115 4.115
12 C -0.114 4.114
13 C -0.144 4.144
14 C -0.071 4.071
15 C -0.117 4.117
16 C 0.035 3.965
17 N -0.390 5.390
18 C -0.383 4.383
19 H 0.091 0.909
20 C -0.264 4.264
21 N -0.619 5.619
22 Si 0.802 3.198
23 H -0.212 1.212
24 H -0.219 1.219
25 H -0.195 1.195
26 C -0.144 4.144
27 C -0.113 4.113
28 O -0.100 6.100
29 H 0.121 0.879
30 H 0.131 0.869
31 H 0.127 0.873
32 H 0.216 0.784
33 H 0.184 0.816
34 H 0.160 0.840
35 H 0.256 0.744
36 H 0.088 0.912
37 H 0.091 0.909
38 H 0.157 0.843
39 H 0.144 0.856
40 H 0.090 0.910
41 H 0.091 0.909
42 H 0.035 0.965
43 H 0.035 0.965
44 H 0.207 0.793
45 H 0.061 0.939
46 H 0.145 0.855
47 H 0.159 0.841
Dipole moment (debyes) X Y Z Total
from point charges -28.287 18.593 -13.776 36.547
hybrid contribution 1.574 -1.436 0.477 2.183
sum -26.713 17.158 -13.299 34.421
Atomic orbital electron populations
1.20527 0.78458 1.06628 1.05861 1.27210 0.97996 0.78116 0.98950
1.70428 1.03041 1.31436 1.20175 1.23401 0.95428 0.93639 1.05605
1.23016 0.83713 0.95230 1.07436 1.20232 0.92052 1.02169 0.94224
1.20862 0.79857 0.77680 0.91559 1.90759 1.54629 1.53037 1.47947
1.45917 1.29642 1.51318 1.09177 1.20044 0.93632 0.98129 0.83485
1.19751 0.94071 0.93745 1.03912 1.21198 0.98928 0.92882 0.98391
1.21213 0.91869 1.00588 1.00723 1.19905 0.94466 0.94365 0.98406
1.20640 0.95502 0.99143 0.96429 1.20703 0.88059 0.92622 0.95130
1.42584 1.31443 1.59594 1.05386 1.19634 1.07430 1.24040 0.87197
0.90878 1.25567 0.99350 1.01296 1.00225 1.69809 1.24615 1.41389
1.26063 0.85140 0.77121 0.78251 0.79250 1.21246 1.21885 1.19513
1.21224 0.99683 0.92790 1.00670 1.21204 0.91253 1.00528 0.98280
1.84355 1.17189 1.38390 1.70068 0.87895 0.86927 0.87333 0.78406
0.81567 0.84024 0.74383 0.91181 0.90904 0.84298 0.85579 0.90960
0.90916 0.96514 0.96531 0.79287 0.93851 0.85508 0.84110
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.45 10.51 71.23 0.75 0.30 16
2 C 0.18 3.32 8.34 88.34 0.74 4.05 16
3 N -0.52 -11.39 11.29 -303.84 -3.43 -14.82 16
4 C -0.04 -0.80 11.80 83.39 0.98 0.19 16
5 C -0.04 -0.68 5.88 24.79 0.15 -0.54 16
6 C -0.05 -0.38 6.25 29.10 0.18 -0.19 16
7 C 0.51 7.67 7.82 87.66 0.69 8.35 16
8 O -0.58 -15.14 16.03 -3.02 -0.05 -15.19 16
9 N -0.71 -7.69 5.55 -466.78 -2.59 -10.28 16
10 C 0.17 2.51 5.80 85.63 0.50 3.00 16
11 C -0.11 -1.84 5.25 -19.86 -0.10 -1.95 16
12 C -0.10 -1.68 9.70 22.27 0.22 -1.47 16
13 C -0.13 -2.79 9.70 22.27 0.22 -2.57 16
14 C -0.07 -1.78 5.13 -19.87 -0.10 -1.89 16
15 C -0.08 -2.48 5.46 29.85 0.16 -2.31 16
16 C 0.16 6.50 6.24 86.38 0.54 7.04 16
17 N -0.75 -38.46 5.60 -343.46 -1.92 -40.39 16
18 C -0.25 -14.25 9.99 84.03 0.84 -13.41 16
19 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16
20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16
21 N -0.97 -59.18 13.06 21.65 0.28 -58.89 16
22 Si 0.97 46.09 29.55 68.60 2.03 48.12 16
23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16
24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16
25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16
26 C -0.13 -2.76 9.70 22.27 0.22 -2.55 16
27 C -0.09 -1.63 9.70 22.27 0.22 -1.42 16
28 O -0.21 -4.14 10.78 -3.72 -0.04 -4.18 16
29 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16
30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16
31 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16
32 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16
33 H 0.17 0.04 8.14 -2.39 -0.02 0.02 16
34 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16
35 H 0.42 2.26 8.46 -92.71 -0.78 1.48 16
36 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16
37 H 0.07 1.17 8.09 -2.39 -0.02 1.16 16
38 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16
39 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16
40 H 0.07 2.24 8.09 -2.39 -0.02 2.22 16
41 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16
42 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16
43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16
44 H 0.38 20.25 7.67 -92.71 -0.71 19.54 16
45 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16
46 H 0.13 2.69 8.06 -2.91 -0.02 2.66 16
47 H 0.14 1.87 8.06 -2.92 -0.02 1.84 16
Total: -1.00 -81.35 407.87 0.42 -80.92
By element:
Atomic # 1 Polarization: 24.24 SS G_CDS: -0.50 Total: 23.74 kcal
Atomic # 6 Polarization: -15.68 SS G_CDS: 6.65 Total: -9.03 kcal
Atomic # 7 Polarization: -116.71 SS G_CDS: -7.66 Total: -124.38 kcal
Atomic # 8 Polarization: -19.28 SS G_CDS: -0.09 Total: -19.37 kcal
Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal
Total: -81.35 0.42 -80.92 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567183197.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.558 kcal
(2) G-P(sol) polarization free energy of solvation -81.348 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.924 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.366 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds