Wall clock time and date at job start Sat Apr 11 2020 06:55:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53000 * 109.46750 * 2 1
4 4 H 1.09002 * 109.46924 * 304.98777 * 3 2 1
5 5 S 1.81392 * 109.47618 * 64.99393 * 3 2 1
6 6 C 1.81401 * 103.00247 * 184.99784 * 5 3 2
7 7 C 1.50703 * 109.47074 * 184.99776 * 3 2 1
8 8 O 1.21286 * 119.99688 * 329.99856 * 7 3 2
9 9 N 1.34771 * 120.00518 * 149.99506 * 7 3 2
10 10 C 1.46502 * 120.00287 * 179.97438 * 9 7 3
11 11 C 1.52999 * 109.47116 * 184.95874 * 10 9 7
12 12 H 1.09001 * 109.88095 * 303.47620 * 11 10 9
13 13 C 1.54322 * 110.02130 * 64.59213 * 11 10 9
14 14 C 1.55148 * 103.01560 * 141.76578 * 13 11 10
15 15 C 1.54911 * 101.65188 * 324.34406 * 14 13 11
16 16 N 1.47440 * 109.88941 * 182.44244 * 11 10 9
17 17 C 1.46898 * 110.99836 * 3.69281 * 16 11 10
18 18 C 1.50699 * 109.47284 * 172.16612 * 17 16 11
19 19 O 1.21294 * 119.99897 * 0.02562 * 18 17 16
20 20 N 1.34772 * 120.00242 * 179.97438 * 18 17 16
21 21 C 1.37102 * 119.99885 * 179.97438 * 20 18 17
22 22 H 1.07998 * 120.00067 * 0.02562 * 21 20 18
23 23 C 1.38955 * 119.99890 * 179.72722 * 21 20 18
24 24 N 1.31416 * 120.00061 * 0.27834 * 23 21 20
25 25 Si 1.86799 * 120.00358 * 180.27486 * 23 21 20
26 26 H 1.48509 * 109.46500 * 60.00157 * 25 23 21
27 27 H 1.48495 * 109.47154 * 179.97438 * 25 23 21
28 28 H 1.48496 * 109.47157 * 300.00452 * 25 23 21
29 29 H 1.09001 * 109.46610 * 60.00855 * 1 2 3
30 30 H 1.08999 * 109.46839 * 179.97438 * 1 2 3
31 31 H 1.08991 * 109.47312 * 300.00600 * 1 2 3
32 32 H 1.08998 * 109.47627 * 239.99200 * 2 1 3
33 33 H 1.09001 * 109.46610 * 119.99145 * 2 1 3
34 34 H 1.09006 * 109.46615 * 59.99828 * 6 5 3
35 35 H 1.08994 * 109.47637 * 179.97438 * 6 5 3
36 36 H 1.09001 * 109.47155 * 300.00149 * 6 5 3
37 37 H 0.97002 * 119.99735 * 0.02562 * 9 7 3
38 38 H 1.08996 * 109.46877 * 64.96217 * 10 9 7
39 39 H 1.08994 * 109.46687 * 304.96130 * 10 9 7
40 40 H 1.08994 * 110.71023 * 260.14394 * 13 11 10
41 41 H 1.08998 * 110.70584 * 23.38736 * 13 11 10
42 42 H 1.08992 * 110.99256 * 82.43885 * 14 13 11
43 43 H 1.09000 * 110.98828 * 206.25526 * 14 13 11
44 44 H 1.08995 * 110.37280 * 278.24423 * 15 14 13
45 45 H 1.09003 * 110.36830 * 155.90252 * 15 14 13
46 46 H 1.08999 * 109.47640 * 52.16692 * 17 16 11
47 47 H 1.09000 * 109.47029 * 292.16743 * 17 16 11
48 48 H 0.96999 * 120.00413 * 0.02562 * 20 18 17
49 49 H 0.96996 * 119.99991 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6054 1.9815 -0.8420
5 16 1.5599 2.2537 1.5498
6 6 2.1076 3.9651 1.3014
7 6 3.5419 1.4444 -0.1238
8 8 4.1883 0.5207 0.3232
9 7 4.1668 2.4725 -0.7312
10 6 5.6269 2.4745 -0.8510
11 6 6.0865 3.7991 -1.4634
12 1 5.5965 3.9528 -2.4249
13 6 5.7512 4.9661 -0.5109
14 6 6.9823 5.8992 -0.6547
15 6 8.1322 4.8757 -0.8277
16 7 7.5500 3.7880 -1.6424
17 6 8.1166 2.4863 -1.2647
18 6 9.5757 2.4459 -1.6393
19 8 10.0929 3.4071 -2.1683
20 7 10.3063 1.3421 -1.3855
21 6 11.6336 1.3052 -1.7267
22 1 12.0939 2.1607 -2.1985
23 6 12.3882 0.1693 -1.4599
24 7 11.8283 -0.8716 -0.8855
25 14 14.1986 0.1218 -1.9179
26 1 14.9184 1.2067 -1.2035
27 1 14.7729 -1.1916 -1.5301
28 1 14.3437 0.3128 -3.3833
29 1 -0.3632 0.5137 -0.8901
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8898
32 1 1.8935 -0.5139 -0.8899
33 1 1.8933 -0.5137 0.8901
34 1 1.6004 4.3864 0.4334
35 1 1.8662 4.5558 2.1850
36 1 3.1849 3.9815 1.1362
37 1 3.6498 3.2114 -1.0884
38 1 5.9400 1.6501 -1.4916
39 1 6.0726 2.3568 0.1367
40 1 4.8422 5.4755 -0.8305
41 1 5.6548 4.6107 0.5150
42 1 6.8897 6.5350 -1.5351
43 1 7.1251 6.4985 0.2446
44 1 8.4501 4.4945 0.1427
45 1 8.9721 5.3334 -1.3504
46 1 7.5847 1.6925 -1.7892
47 1 8.0135 2.3435 -0.1891
48 1 9.8928 0.5736 -0.9621
49 1 12.3549 -1.6646 -0.6996
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001567361951.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:19
Heat of formation + Delta-G solvation = -67.712214 kcal
Electronic energy + Delta-G solvation = -28467.844037 eV
Core-core repulsion = 24556.127944 eV
Total energy + Delta-G solvation = -3911.716094 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.39859 -39.34566 -37.61960 -35.05892 -34.71873 -33.88191 -32.15944 -31.11710
-30.49312 -29.32114 -28.10379 -26.73816 -25.04530 -24.25218 -22.37310 -21.39288
-20.76853 -20.21126 -18.99899 -17.90875 -17.49971 -17.12643 -16.88088 -15.76783
-15.60697 -15.42452 -15.38393 -14.94646 -14.52998 -14.42529 -14.17635 -14.12961
-13.88245 -13.79888 -13.56514 -13.27008 -13.00796 -12.78893 -12.60405 -12.41697
-12.11665 -12.04414 -11.74416 -11.58873 -11.45972 -11.37961 -11.21828 -11.07142
-10.98780 -10.92648 -10.67179 -10.58197 -10.41913 -10.18544 -10.10133 -9.46429
-9.30364 -8.46517 -8.09932 -7.96093 -7.89509 -6.38081 -3.79269 0.96932
1.88315 2.64604 2.80587 3.21912 3.27651 3.31758 3.91259 3.96885
4.15693 4.22314 4.30580 4.42539 4.54824 4.63264 4.67665 4.71182
4.72304 4.96907 5.06635 5.09010 5.13882 5.20692 5.25822 5.28230
5.34725 5.36868 5.56637 5.60351 5.64062 5.66456 5.75528 5.76846
5.79923 5.92188 5.94678 5.98885 6.14260 6.21078 6.30767 6.45641
7.10017 7.18586 7.20026 7.57835 7.90703 8.08724 8.64765 9.20929
9.57561 10.09204 10.79505
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.013798 B = 0.002501 C = 0.002194
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2028.727358 B =11194.684596 C =12760.605829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.093 4.093
3 C -0.080 4.080
4 H 0.105 0.895
5 S -0.206 6.206
6 C -0.139 4.139
7 C 0.514 3.486
8 O -0.515 6.515
9 N -0.726 5.726
10 C 0.098 3.902
11 C 0.062 3.938
12 H 0.090 0.910
13 C -0.139 4.139
14 C -0.130 4.130
15 C 0.051 3.949
16 N -0.492 5.492
17 C 0.031 3.969
18 C 0.444 3.556
19 O -0.579 6.579
20 N -0.564 5.564
21 C -0.299 4.299
22 H 0.102 0.898
23 C 0.022 3.978
24 N -0.901 5.901
25 Si 0.930 3.070
26 H -0.274 1.274
27 H -0.284 1.284
28 H -0.274 1.274
29 H 0.055 0.945
30 H 0.061 0.939
31 H 0.067 0.933
32 H 0.080 0.920
33 H 0.084 0.916
34 H 0.080 0.920
35 H 0.106 0.894
36 H 0.081 0.919
37 H 0.396 0.604
38 H 0.081 0.919
39 H 0.075 0.925
40 H 0.071 0.929
41 H 0.068 0.932
42 H 0.075 0.925
43 H 0.071 0.929
44 H 0.042 0.958
45 H 0.098 0.902
46 H 0.093 0.907
47 H 0.052 0.948
48 H 0.392 0.608
49 H 0.272 0.728
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.726 8.504 3.136 26.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.132 4.132
3 C -0.212 4.212
4 H 0.123 0.877
5 S 0.020 5.980
6 C -0.308 4.308
7 C 0.296 3.704
8 O -0.389 6.389
9 N -0.379 5.379
10 C -0.026 4.026
11 C -0.047 4.047
12 H 0.108 0.892
13 C -0.178 4.178
14 C -0.168 4.168
15 C -0.076 4.076
16 N -0.216 5.216
17 C -0.100 4.100
18 C 0.229 3.771
19 O -0.463 6.463
20 N -0.200 5.200
21 C -0.429 4.429
22 H 0.120 0.880
23 C -0.180 4.180
24 N -0.542 5.542
25 Si 0.758 3.242
26 H -0.200 1.200
27 H -0.210 1.210
28 H -0.199 1.199
29 H 0.074 0.926
30 H 0.080 0.920
31 H 0.086 0.914
32 H 0.099 0.901
33 H 0.103 0.897
34 H 0.099 0.901
35 H 0.124 0.876
36 H 0.100 0.900
37 H 0.230 0.770
38 H 0.099 0.901
39 H 0.093 0.907
40 H 0.089 0.911
41 H 0.087 0.913
42 H 0.094 0.906
43 H 0.090 0.910
44 H 0.060 0.940
45 H 0.116 0.884
46 H 0.111 0.889
47 H 0.070 0.930
48 H 0.225 0.775
49 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -24.168 7.929 3.525 25.678
hybrid contribution 0.864 0.175 -0.326 0.940
sum -23.304 8.104 3.200 24.880
Atomic orbital electron populations
1.21850 0.94374 1.02307 1.02600 1.21215 0.96422 0.91055 1.04487
1.23472 0.95201 1.02948 0.99587 0.87692 1.87099 1.78765 1.07807
1.24318 1.23608 1.04862 0.95792 1.06524 1.20391 0.89354 0.82525
0.78136 1.90766 1.66775 1.34809 1.46594 1.46034 1.08257 1.23468
1.60143 1.22262 0.79079 0.99056 1.02153 1.22751 0.90574 0.92802
0.98618 0.89191 1.22906 0.98932 0.96454 0.99480 1.22738 0.94424
0.97632 1.02008 1.23093 0.97647 0.91044 0.95823 1.63502 1.00733
1.03326 1.54030 1.22230 0.96312 0.92307 0.99194 1.19679 0.87263
0.84798 0.85379 1.90500 1.72469 1.36037 1.47308 1.41854 1.10113
1.14249 1.53827 1.19634 0.84685 1.01486 1.37085 0.87992 1.25268
1.00502 0.95104 0.97082 1.69611 1.37433 1.04823 1.42330 0.85926
0.81983 0.77274 0.79067 1.19952 1.20985 1.19895 0.92576 0.92004
0.91437 0.90112 0.89741 0.90130 0.87575 0.90005 0.76961 0.90119
0.90678 0.91050 0.91345 0.90624 0.90990 0.93951 0.88414 0.88885
0.93010 0.77463 0.91803
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.00 9.74 37.16 0.36 -0.64 16
2 C -0.09 -0.79 4.91 -26.73 -0.13 -0.93 16
3 C -0.08 -0.67 2.62 -27.88 -0.07 -0.74 16
4 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16
5 S -0.21 -1.75 20.59 -107.50 -2.21 -3.96 16
6 C -0.14 -0.80 10.54 101.05 1.07 0.27 16
7 C 0.51 5.77 6.55 -10.99 -0.07 5.70 16
8 O -0.51 -8.19 16.27 5.55 0.09 -8.10 16
9 N -0.73 -6.66 4.69 -60.30 -0.28 -6.94 16
10 C 0.10 1.15 3.76 -4.04 -0.02 1.14 16
11 C 0.06 0.70 3.50 -66.72 -0.23 0.47 16
12 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
13 C -0.14 -1.28 6.10 -24.90 -0.15 -1.43 16
14 C -0.13 -1.41 7.08 -24.59 -0.17 -1.59 16
15 C 0.05 0.79 5.66 -2.30 -0.01 0.78 16
16 N -0.49 -7.85 4.90 -224.78 -1.10 -8.96 16
17 C 0.03 0.56 4.17 -4.98 -0.02 0.54 16
18 C 0.44 10.58 7.56 -10.99 -0.08 10.50 16
19 O -0.58 -15.59 14.44 5.55 0.08 -15.51 16
20 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16
21 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16
22 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16
23 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16
24 N -0.90 -25.04 13.05 55.50 0.72 -24.32 16
25 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16
26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16
30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16
31 H 0.07 0.47 7.13 -51.93 -0.37 0.09 16
32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.08 0.88 8.02 -51.93 -0.42 0.46 16
34 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16
35 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16
36 H 0.08 0.52 7.36 -51.92 -0.38 0.14 16
37 H 0.40 2.45 8.33 -40.82 -0.34 2.11 16
38 H 0.08 1.08 6.23 -51.93 -0.32 0.76 16
39 H 0.07 1.01 7.02 -51.93 -0.36 0.65 16
40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16
41 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16
42 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
44 H 0.04 0.68 7.66 -51.93 -0.40 0.28 16
45 H 0.10 1.78 7.27 -51.93 -0.38 1.40 16
46 H 0.09 1.57 6.13 -51.93 -0.32 1.25 16
47 H 0.05 0.88 6.85 -51.93 -0.36 0.53 16
48 H 0.39 9.84 7.90 -40.82 -0.32 9.51 16
49 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16
LS Contribution 402.08 15.07 6.06 6.06
Total: -1.00 -33.69 402.08 -9.62 -43.31
By element:
Atomic # 1 Polarization: 18.85 SS G_CDS: -8.11 Total: 10.74 kcal
Atomic # 6 Polarization: 5.76 SS G_CDS: 0.22 Total: 5.98 kcal
Atomic # 7 Polarization: -54.13 SS G_CDS: -0.72 Total: -54.85 kcal
Atomic # 8 Polarization: -23.78 SS G_CDS: 0.17 Total: -23.61 kcal
Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal
Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -33.69 -9.62 -43.31 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567361951.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.405 kcal
(2) G-P(sol) polarization free energy of solvation -33.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.093 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.712 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds