Wall clock time and date at job start Sat Apr 11 2020 06:55:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53000 * 109.46750 * 2 1
4 4 H 1.09002 * 109.46924 * 304.98777 * 3 2 1
5 5 S 1.81392 * 109.47618 * 64.99393 * 3 2 1
6 6 C 1.81401 * 103.00247 * 184.99784 * 5 3 2
7 7 C 1.50703 * 109.47074 * 184.99776 * 3 2 1
8 8 O 1.21286 * 119.99688 * 329.99856 * 7 3 2
9 9 N 1.34771 * 120.00518 * 149.99506 * 7 3 2
10 10 C 1.46502 * 120.00287 * 179.97438 * 9 7 3
11 11 C 1.52999 * 109.47116 * 184.95874 * 10 9 7
12 12 H 1.09001 * 109.88095 * 303.47620 * 11 10 9
13 13 C 1.54322 * 110.02130 * 64.59213 * 11 10 9
14 14 C 1.55148 * 103.01560 * 141.76578 * 13 11 10
15 15 C 1.54911 * 101.65188 * 324.34406 * 14 13 11
16 16 N 1.47440 * 109.88941 * 182.44244 * 11 10 9
17 17 C 1.46898 * 110.99836 * 3.69281 * 16 11 10
18 18 C 1.50699 * 109.47284 * 172.16612 * 17 16 11
19 19 O 1.21294 * 119.99897 * 0.02562 * 18 17 16
20 20 N 1.34772 * 120.00242 * 179.97438 * 18 17 16
21 21 C 1.37102 * 119.99885 * 179.97438 * 20 18 17
22 22 H 1.07998 * 120.00067 * 0.02562 * 21 20 18
23 23 C 1.38955 * 119.99890 * 179.72722 * 21 20 18
24 24 N 1.31416 * 120.00061 * 0.27834 * 23 21 20
25 25 Si 1.86799 * 120.00358 * 180.27486 * 23 21 20
26 26 H 1.48509 * 109.46500 * 60.00157 * 25 23 21
27 27 H 1.48495 * 109.47154 * 179.97438 * 25 23 21
28 28 H 1.48496 * 109.47157 * 300.00452 * 25 23 21
29 29 H 1.09001 * 109.46610 * 60.00855 * 1 2 3
30 30 H 1.08999 * 109.46839 * 179.97438 * 1 2 3
31 31 H 1.08991 * 109.47312 * 300.00600 * 1 2 3
32 32 H 1.08998 * 109.47627 * 239.99200 * 2 1 3
33 33 H 1.09001 * 109.46610 * 119.99145 * 2 1 3
34 34 H 1.09006 * 109.46615 * 59.99828 * 6 5 3
35 35 H 1.08994 * 109.47637 * 179.97438 * 6 5 3
36 36 H 1.09001 * 109.47155 * 300.00149 * 6 5 3
37 37 H 0.97002 * 119.99735 * 0.02562 * 9 7 3
38 38 H 1.08996 * 109.46877 * 64.96217 * 10 9 7
39 39 H 1.08994 * 109.46687 * 304.96130 * 10 9 7
40 40 H 1.08994 * 110.71023 * 260.14394 * 13 11 10
41 41 H 1.08998 * 110.70584 * 23.38736 * 13 11 10
42 42 H 1.08992 * 110.99256 * 82.43885 * 14 13 11
43 43 H 1.09000 * 110.98828 * 206.25526 * 14 13 11
44 44 H 1.08995 * 110.37280 * 278.24423 * 15 14 13
45 45 H 1.09003 * 110.36830 * 155.90252 * 15 14 13
46 46 H 1.08999 * 109.47640 * 52.16692 * 17 16 11
47 47 H 1.09000 * 109.47029 * 292.16743 * 17 16 11
48 48 H 0.96999 * 120.00413 * 0.02562 * 20 18 17
49 49 H 0.96996 * 119.99991 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6054 1.9815 -0.8420
5 16 1.5599 2.2537 1.5498
6 6 2.1076 3.9651 1.3014
7 6 3.5419 1.4444 -0.1238
8 8 4.1883 0.5207 0.3232
9 7 4.1668 2.4725 -0.7312
10 6 5.6269 2.4745 -0.8510
11 6 6.0865 3.7991 -1.4634
12 1 5.5965 3.9528 -2.4249
13 6 5.7512 4.9661 -0.5109
14 6 6.9823 5.8992 -0.6547
15 6 8.1322 4.8757 -0.8277
16 7 7.5500 3.7880 -1.6424
17 6 8.1166 2.4863 -1.2647
18 6 9.5757 2.4459 -1.6393
19 8 10.0929 3.4071 -2.1683
20 7 10.3063 1.3421 -1.3855
21 6 11.6336 1.3052 -1.7267
22 1 12.0939 2.1607 -2.1985
23 6 12.3882 0.1693 -1.4599
24 7 11.8283 -0.8716 -0.8855
25 14 14.1986 0.1218 -1.9179
26 1 14.9184 1.2067 -1.2035
27 1 14.7729 -1.1916 -1.5301
28 1 14.3437 0.3128 -3.3833
29 1 -0.3632 0.5137 -0.8901
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5139 0.8898
32 1 1.8935 -0.5139 -0.8899
33 1 1.8933 -0.5137 0.8901
34 1 1.6004 4.3864 0.4334
35 1 1.8662 4.5558 2.1850
36 1 3.1849 3.9815 1.1362
37 1 3.6498 3.2114 -1.0884
38 1 5.9400 1.6501 -1.4916
39 1 6.0726 2.3568 0.1367
40 1 4.8422 5.4755 -0.8305
41 1 5.6548 4.6107 0.5150
42 1 6.8897 6.5350 -1.5351
43 1 7.1251 6.4985 0.2446
44 1 8.4501 4.4945 0.1427
45 1 8.9721 5.3334 -1.3504
46 1 7.5847 1.6925 -1.7892
47 1 8.0135 2.3435 -0.1891
48 1 9.8928 0.5736 -0.9621
49 1 12.3549 -1.6646 -0.6996
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001567361951.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:18
Heat of formation + Delta-G solvation = -92.945143 kcal
Electronic energy + Delta-G solvation = -28468.938219 eV
Core-core repulsion = 24556.127944 eV
Total energy + Delta-G solvation = -3912.810275 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.44275 -40.56628 -39.33574 -36.09082 -35.78149 -35.51204 -33.53843 -33.02082
-31.41169 -29.85563 -28.76540 -28.34647 -26.12852 -25.96469 -23.08446 -22.43835
-21.69915 -21.45085 -20.59034 -19.83320 -18.43973 -18.26317 -17.78911 -17.13200
-16.78421 -16.50550 -16.36486 -16.18717 -16.04153 -15.72489 -15.62433 -15.09875
-14.89069 -14.60286 -14.43057 -14.26555 -14.16678 -13.79853 -13.67753 -13.49200
-13.37467 -13.11440 -12.97862 -12.83233 -12.74543 -12.45636 -12.31196 -12.16698
-12.13812 -12.01417 -11.99305 -11.95036 -11.61699 -11.49458 -11.36148 -10.86141
-10.37008 -10.20311 -10.03809 -9.28277 -8.72764 -8.47878 -5.97561 0.33082
1.31121 1.37982 1.39256 1.51029 1.81721 1.99767 2.02002 2.26679
2.76538 3.17279 3.29719 3.45722 3.48972 3.64677 3.72258 3.79932
4.02668 4.13150 4.19496 4.22559 4.31417 4.33743 4.34976 4.38178
4.40443 4.48818 4.52672 4.55989 4.73982 4.80005 4.87135 4.94356
5.00782 5.04414 5.09547 5.16346 5.19691 5.23612 5.34942 5.38319
5.41511 5.80744 5.98325 6.08607 6.36928 6.57376 7.09424 7.10148
7.52922 8.08163 8.69461
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.013798 B = 0.002501 C = 0.002194
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2028.727358 B =11194.684596 C =12760.605829
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.095 4.095
3 C -0.069 4.069
4 H 0.139 0.861
5 S -0.246 6.246
6 C -0.131 4.131
7 C 0.512 3.488
8 O -0.569 6.569
9 N -0.705 5.705
10 C 0.107 3.893
11 C 0.066 3.934
12 H 0.109 0.891
13 C -0.127 4.127
14 C -0.118 4.118
15 C 0.046 3.954
16 N -0.511 5.511
17 C 0.048 3.952
18 C 0.441 3.559
19 O -0.613 6.613
20 N -0.576 5.576
21 C -0.333 4.333
22 H 0.081 0.919
23 C -0.015 4.015
24 N -0.923 5.923
25 Si 0.995 3.005
26 H -0.271 1.271
27 H -0.271 1.271
28 H -0.270 1.270
29 H 0.072 0.928
30 H 0.064 0.936
31 H 0.063 0.937
32 H 0.077 0.923
33 H 0.057 0.943
34 H 0.107 0.893
35 H 0.114 0.886
36 H 0.078 0.922
37 H 0.416 0.584
38 H 0.061 0.939
39 H 0.055 0.945
40 H 0.113 0.887
41 H 0.069 0.931
42 H 0.084 0.916
43 H 0.089 0.911
44 H 0.027 0.973
45 H 0.060 0.940
46 H 0.106 0.894
47 H 0.061 0.939
48 H 0.394 0.606
49 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -27.014 10.125 2.699 28.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.133 4.133
3 C -0.200 4.200
4 H 0.157 0.843
5 S -0.020 6.020
6 C -0.299 4.299
7 C 0.295 3.705
8 O -0.448 6.448
9 N -0.359 5.359
10 C -0.018 4.018
11 C -0.042 4.042
12 H 0.127 0.873
13 C -0.165 4.165
14 C -0.156 4.156
15 C -0.082 4.082
16 N -0.236 5.236
17 C -0.083 4.083
18 C 0.228 3.772
19 O -0.498 6.498
20 N -0.213 5.213
21 C -0.462 4.462
22 H 0.099 0.901
23 C -0.215 4.215
24 N -0.564 5.564
25 Si 0.818 3.182
26 H -0.196 1.196
27 H -0.195 1.195
28 H -0.195 1.195
29 H 0.091 0.909
30 H 0.083 0.917
31 H 0.082 0.918
32 H 0.095 0.905
33 H 0.076 0.924
34 H 0.126 0.874
35 H 0.133 0.867
36 H 0.096 0.904
37 H 0.254 0.746
38 H 0.079 0.921
39 H 0.074 0.926
40 H 0.131 0.869
41 H 0.088 0.912
42 H 0.102 0.898
43 H 0.107 0.893
44 H 0.046 0.954
45 H 0.078 0.922
46 H 0.124 0.876
47 H 0.079 0.921
48 H 0.227 0.773
49 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -26.511 9.586 3.082 28.359
hybrid contribution 1.551 -0.273 -0.189 1.586
sum -24.960 9.313 2.893 26.798
Atomic orbital electron populations
1.21793 0.92567 1.02779 1.03203 1.21202 0.97905 0.91194 1.03030
1.23430 0.92690 1.03199 1.00658 0.84286 1.87323 1.78736 1.10702
1.25219 1.23699 1.04747 0.93241 1.08213 1.20976 0.90585 0.81831
0.77071 1.90750 1.68157 1.36950 1.48940 1.45792 1.07194 1.23651
1.59296 1.21968 0.80555 0.98655 1.00613 1.22842 0.87489 0.93518
1.00341 0.87275 1.22907 0.99709 0.94911 0.99022 1.22690 0.92869
0.96808 1.03252 1.23026 0.98654 0.92229 0.94273 1.63417 1.03557
1.02039 1.54580 1.22012 0.92206 0.94352 0.99726 1.20714 0.89418
0.83460 0.83637 1.90471 1.73913 1.37006 1.48440 1.41958 1.09842
1.15005 1.54501 1.19637 0.86169 1.01628 1.38786 0.90112 1.26104
1.04662 0.94291 0.96441 1.69689 1.39010 1.05193 1.42477 0.84961
0.76613 0.77794 0.78800 1.19574 1.19528 1.19523 0.90884 0.91693
0.91781 0.90463 0.92444 0.87422 0.86724 0.90350 0.74603 0.92068
0.92625 0.86882 0.91194 0.89782 0.89260 0.95425 0.92165 0.87619
0.92136 0.77309 0.91305
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.67 9.74 71.98 0.70 -0.96 16
2 C -0.09 -1.55 4.91 30.60 0.15 -1.40 16
3 C -0.07 -1.00 2.62 29.85 0.08 -0.93 16
4 H 0.14 1.07 8.14 -2.39 -0.02 1.05 16
5 S -0.25 -3.72 20.59 -56.49 -1.16 -4.89 16
6 C -0.13 -1.02 10.54 113.37 1.20 0.18 16
7 C 0.51 10.89 6.55 87.66 0.57 11.46 16
8 O -0.57 -18.46 16.27 -3.05 -0.05 -18.51 16
9 N -0.71 -11.21 4.69 -463.07 -2.17 -13.38 16
10 C 0.11 2.37 3.76 86.38 0.32 2.70 16
11 C 0.07 1.35 3.50 45.26 0.16 1.51 16
12 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16
13 C -0.13 -1.83 6.10 31.78 0.19 -1.64 16
14 C -0.12 -2.26 7.08 31.98 0.23 -2.03 16
15 C 0.05 1.42 5.66 86.78 0.49 1.91 16
16 N -0.51 -16.14 4.90 -865.08 -4.24 -20.38 16
17 C 0.05 1.78 4.17 85.56 0.36 2.14 16
18 C 0.44 21.87 7.56 87.66 0.66 22.53 16
19 O -0.61 -34.47 14.44 -3.07 -0.04 -34.51 16
20 N -0.58 -31.02 5.29 -306.98 -1.62 -32.64 16
21 C -0.33 -19.48 9.68 84.04 0.81 -18.66 16
22 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16
23 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16
24 N -0.92 -51.88 13.05 21.67 0.28 -51.60 16
25 Si 1.00 44.10 29.55 68.60 2.03 46.13 16
26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
27 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16
28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16
30 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16
31 H 0.06 0.79 7.13 -2.39 -0.02 0.77 16
32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
33 H 0.06 1.25 8.02 -2.39 -0.02 1.23 16
34 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16
35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16
36 H 0.08 0.69 7.36 -2.39 -0.02 0.67 16
37 H 0.42 3.34 8.33 -92.71 -0.77 2.57 16
38 H 0.06 1.62 6.23 -2.39 -0.01 1.61 16
39 H 0.06 1.48 7.02 -2.39 -0.02 1.47 16
40 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16
41 H 0.07 1.05 7.82 -2.39 -0.02 1.03 16
42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
44 H 0.03 0.91 7.66 -2.39 -0.02 0.89 16
45 H 0.06 2.30 7.27 -2.39 -0.02 2.28 16
46 H 0.11 3.62 6.13 -2.39 -0.01 3.61 16
47 H 0.06 2.13 6.85 -2.39 -0.02 2.11 16
48 H 0.39 20.57 7.90 -92.71 -0.73 19.84 16
49 H 0.28 14.63 8.31 -92.71 -0.77 13.86 16
Total: -1.00 -78.00 402.08 -1.13 -79.13
By element:
Atomic # 1 Polarization: 34.79 SS G_CDS: -0.54 Total: 34.25 kcal
Atomic # 6 Polarization: 10.01 SS G_CDS: 6.39 Total: 16.41 kcal
Atomic # 7 Polarization: -110.25 SS G_CDS: -7.75 Total: -118.00 kcal
Atomic # 8 Polarization: -52.93 SS G_CDS: -0.09 Total: -53.02 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal
Atomic # 16 Polarization: -3.72 SS G_CDS: -1.16 Total: -4.89 kcal
Total: -78.00 -1.13 -79.13 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001567361951.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.820 kcal
(2) G-P(sol) polarization free energy of solvation -77.997 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.817 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.128 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.945 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds