Wall clock time and date at job start Sat Apr 11 2020 06:53:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 109.46930 * 2 1
4 4 S 1.81399 * 109.46965 * 180.02562 * 3 2 1
5 5 C 1.81399 * 102.99928 * 180.02562 * 4 3 2
6 6 C 1.50699 * 109.47177 * 180.02562 * 5 4 3
7 7 O 1.21281 * 120.00458 * 359.97438 * 6 5 4
8 8 N 1.34783 * 119.99902 * 179.97438 * 6 5 4
9 9 C 1.47426 * 125.65102 * 359.97438 * 8 6 5
10 10 C 1.54902 * 104.83376 * 204.14477 * 9 8 6
11 11 H 1.09003 * 111.03591 * 81.07772 * 10 9 8
12 12 N 1.46895 * 111.00895 * 204.91165 * 10 9 8
13 13 C 1.46893 * 111.00318 * 267.20018 * 12 10 9
14 14 C 1.50708 * 109.47146 * 179.97438 * 13 12 10
15 15 O 1.21288 * 119.99815 * 359.97438 * 14 13 12
16 16 N 1.34774 * 119.99719 * 180.02562 * 14 13 12
17 17 C 1.37101 * 119.99349 * 180.02562 * 16 14 13
18 18 H 1.07991 * 120.00515 * 359.97438 * 17 16 14
19 19 C 1.38955 * 119.99490 * 179.97438 * 17 16 14
20 20 N 1.31413 * 120.00236 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99845 * 179.97438 * 19 17 16
22 22 H 1.48498 * 109.47174 * 270.00316 * 21 19 17
23 23 H 1.48501 * 109.47062 * 30.00267 * 21 19 17
24 24 H 1.48504 * 109.46913 * 150.00066 * 21 19 17
25 25 C 1.55154 * 101.58416 * 322.99191 * 10 9 8
26 26 C 1.47028 * 125.64662 * 179.97438 * 8 6 5
27 27 H 1.08996 * 110.01252 * 298.41502 * 26 8 6
28 28 C 1.53003 * 109.87713 * 59.50738 * 26 8 6
29 29 H 1.09009 * 109.46931 * 299.99832 * 1 2 3
30 30 H 1.08996 * 109.47611 * 59.99697 * 1 2 3
31 31 H 1.09001 * 109.47050 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47150 * 240.00334 * 2 1 3
33 33 H 1.09001 * 109.47128 * 119.99789 * 2 1 3
34 34 H 1.09000 * 109.46931 * 60.00201 * 3 2 1
35 35 H 1.09001 * 109.47042 * 299.99841 * 3 2 1
36 36 H 1.08998 * 109.47606 * 59.99741 * 5 4 3
37 37 H 1.09009 * 109.47151 * 299.99941 * 5 4 3
38 38 H 1.08995 * 110.36600 * 85.30405 * 9 8 6
39 39 H 1.08996 * 110.36294 * 322.98911 * 9 8 6
40 40 H 1.00899 * 111.00063 * 143.24194 * 12 10 9
41 41 H 1.09002 * 109.47091 * 59.99845 * 13 12 10
42 42 H 1.09000 * 109.47343 * 299.99463 * 13 12 10
43 43 H 0.96996 * 120.00564 * 359.97438 * 16 14 13
44 44 H 0.97001 * 119.99781 * 179.97438 * 20 19 17
45 45 H 1.09005 * 110.72372 * 153.86337 * 25 10 9
46 46 H 1.08999 * 110.72074 * 276.96377 * 25 10 9
47 47 H 1.09003 * 109.46655 * 177.80494 * 28 26 8
48 48 H 1.08990 * 109.47287 * 297.80438 * 28 26 8
49 49 H 1.08996 * 109.47198 * 57.81090 * 28 26 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 16 3.8539 1.4426 -0.0008
5 6 4.2620 3.2101 0.0001
6 6 5.7593 3.3800 -0.0010
7 8 6.4804 2.4047 -0.0019
8 7 6.2974 4.6157 -0.0012
9 6 5.5420 5.8818 -0.0008
10 6 6.5119 6.9225 -0.6136
11 1 6.5133 6.8627 -1.7020
12 7 6.1793 8.2809 -0.1643
13 6 5.2726 8.9418 -1.1123
14 6 4.9541 10.3296 -0.6186
15 8 5.4348 10.7286 0.4210
16 7 4.1343 11.1269 -1.3318
17 6 3.8450 12.3897 -0.8828
18 1 4.2737 12.7453 0.0424
19 6 3.0002 13.2119 -1.6184
20 7 2.4789 12.7794 -2.7445
21 14 2.6054 14.9321 -1.0064
22 1 1.3994 14.8851 -0.1412
23 1 3.7549 15.4555 -0.2253
24 1 2.3483 15.8232 -2.1662
25 6 7.8734 6.4612 -0.0296
26 6 7.7349 4.9245 -0.0017
27 1 8.2023 4.5262 0.8988
28 6 8.3963 4.3199 -1.2419
29 1 -0.3633 0.5139 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 1.6766 1.9563 0.8900
35 1 1.6766 1.9564 -0.8900
36 1 3.8434 3.6792 0.8905
37 1 3.8426 3.6802 -0.8895
38 1 5.2762 6.1646 1.0177
39 1 4.6467 5.7894 -0.6155
40 1 7.0143 8.8289 -0.0206
41 1 4.3510 8.3657 -1.1954
42 1 5.7513 9.0045 -2.0895
43 1 3.7495 10.8077 -2.1630
44 1 1.8889 13.3533 -3.2577
45 1 8.6942 6.7629 -0.6803
46 1 8.0152 6.8563 0.9763
47 1 9.4534 4.5856 -1.2558
48 1 8.2946 3.2351 -1.2156
49 1 7.9123 4.7087 -2.1378
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001734410971.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:52
Heat of formation + Delta-G solvation = -76.723560 kcal
Electronic energy + Delta-G solvation = -27145.008512 eV
Core-core repulsion = 23232.901657 eV
Total energy + Delta-G solvation = -3912.106855 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.50050 -38.51513 -37.78187 -35.05875 -34.88738 -33.85978 -32.63277 -31.30843
-30.05683 -29.66316 -27.63149 -26.37827 -26.10137 -24.15625 -22.64305 -21.92331
-20.84012 -19.49175 -19.19672 -17.96318 -17.46488 -16.76060 -16.40139 -16.02346
-15.91566 -15.59479 -15.25090 -15.02738 -14.60309 -14.30858 -14.16482 -13.94265
-13.75359 -13.62297 -13.54871 -13.50955 -13.22848 -12.92882 -12.78241 -12.53315
-12.28585 -12.09663 -11.86745 -11.75408 -11.59019 -11.54924 -11.28359 -11.23157
-11.21300 -11.08694 -10.81000 -10.44200 -10.27664 -10.20372 -10.09560 -9.57266
-8.91816 -8.57780 -8.24578 -8.03203 -7.91843 -6.47964 -3.89005 1.13324
2.23646 2.34712 2.71288 3.13445 3.22721 3.28217 3.81957 3.88083
4.11031 4.27198 4.30665 4.41115 4.47334 4.51956 4.64523 4.77820
4.86027 4.89297 4.96283 5.02146 5.06026 5.14206 5.16769 5.21574
5.24600 5.29866 5.36872 5.41802 5.59496 5.60383 5.63146 5.66830
5.67719 5.79383 5.82313 5.85117 5.86542 6.01379 6.16653 6.20330
7.04874 7.21564 7.47425 7.49453 7.87386 7.99444 8.53886 9.11400
9.46999 9.97856 10.69589
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010036 B = 0.002103 C = 0.001785
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2789.406302 B =13310.140434 C =15681.098833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.107 4.107
3 C -0.106 4.106
4 S -0.189 6.189
5 C -0.124 4.124
6 C 0.549 3.451
7 O -0.520 6.520
8 N -0.611 5.611
9 C 0.105 3.895
10 C 0.075 3.925
11 H 0.063 0.937
12 N -0.657 5.657
13 C 0.050 3.950
14 C 0.439 3.561
15 O -0.583 6.583
16 N -0.562 5.562
17 C -0.300 4.300
18 H 0.103 0.897
19 C 0.022 3.978
20 N -0.901 5.901
21 Si 0.930 3.070
22 H -0.278 1.278
23 H -0.269 1.269
24 H -0.284 1.284
25 C -0.133 4.133
26 C 0.141 3.859
27 H 0.078 0.922
28 C -0.164 4.164
29 H 0.056 0.944
30 H 0.057 0.943
31 H 0.060 0.940
32 H 0.072 0.928
33 H 0.072 0.928
34 H 0.081 0.919
35 H 0.081 0.919
36 H 0.111 0.889
37 H 0.110 0.890
38 H 0.087 0.913
39 H 0.074 0.926
40 H 0.357 0.643
41 H 0.085 0.915
42 H 0.046 0.954
43 H 0.392 0.608
44 H 0.272 0.728
45 H 0.085 0.915
46 H 0.090 0.910
47 H 0.065 0.935
48 H 0.071 0.929
49 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.915 -21.656 1.173 21.772
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.145 4.145
3 C -0.255 4.255
4 S 0.038 5.962
5 C -0.275 4.275
6 C 0.335 3.665
7 O -0.396 6.396
8 N -0.346 5.346
9 C -0.019 4.019
10 C -0.036 4.036
11 H 0.081 0.919
12 N -0.290 5.290
13 C -0.083 4.083
14 C 0.225 3.775
15 O -0.467 6.467
16 N -0.199 5.199
17 C -0.430 4.430
18 H 0.121 0.879
19 C -0.179 4.179
20 N -0.542 5.542
21 Si 0.757 3.243
22 H -0.204 1.204
23 H -0.194 1.194
24 H -0.209 1.209
25 C -0.171 4.171
26 C 0.037 3.963
27 H 0.096 0.904
28 C -0.222 4.222
29 H 0.076 0.924
30 H 0.076 0.924
31 H 0.079 0.921
32 H 0.090 0.910
33 H 0.090 0.910
34 H 0.100 0.900
35 H 0.100 0.900
36 H 0.129 0.871
37 H 0.128 0.872
38 H 0.105 0.895
39 H 0.092 0.908
40 H 0.178 0.822
41 H 0.104 0.896
42 H 0.064 0.936
43 H 0.225 0.775
44 H 0.082 0.918
45 H 0.103 0.897
46 H 0.109 0.891
47 H 0.084 0.916
48 H 0.090 0.910
49 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 2.669 -22.923 2.152 23.178
hybrid contribution -0.937 2.196 -1.095 2.627
sum 1.732 -20.728 1.057 20.827
Atomic orbital electron populations
1.21770 0.94589 1.02164 1.02180 1.21224 0.96078 0.93824 1.03419
1.23592 0.94969 1.01785 1.05113 1.87429 1.04802 1.05889 1.98087
1.23479 0.97419 0.99314 1.07272 1.19225 0.88734 0.81864 0.76641
1.90732 1.61965 1.37631 1.49292 1.48440 1.07691 1.05225 1.73278
1.22459 0.94759 0.82084 1.02553 1.22611 0.93690 0.89790 0.97539
0.91891 1.59953 1.20750 1.01353 1.46983 1.21759 0.97661 0.95351
0.93534 1.19756 0.84419 0.86604 0.86763 1.90531 1.55823 1.75477
1.24878 1.41865 1.41607 1.13756 1.22654 1.19704 1.26208 0.89256
1.07802 0.87872 1.25276 0.96685 1.00349 0.95624 1.69609 1.32380
1.37998 1.14243 0.85851 0.79009 0.81303 0.78097 1.20352 1.19395
1.20915 1.22954 0.97401 0.93470 1.03256 1.21501 0.80715 0.94782
0.99259 0.90361 1.22168 1.00283 1.02663 0.97092 0.92450 0.92437
0.92100 0.90966 0.90963 0.89986 0.90002 0.87108 0.87224 0.89524
0.90791 0.82204 0.89642 0.93599 0.77465 0.91819 0.89664 0.89150
0.91593 0.91003 0.92505
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.79 9.91 37.16 0.37 -0.42 16
2 C -0.11 -0.70 5.94 -26.73 -0.16 -0.86 16
3 C -0.11 -0.78 5.94 37.16 0.22 -0.56 16
4 S -0.19 -2.00 20.87 -107.50 -2.24 -4.24 16
5 C -0.12 -1.17 5.43 36.01 0.20 -0.98 16
6 C 0.55 6.61 7.65 -10.98 -0.08 6.52 16
7 O -0.52 -7.95 14.77 5.56 0.08 -7.87 16
8 N -0.61 -6.53 3.08 -163.02 -0.50 -7.03 16
9 C 0.11 1.06 6.39 -2.53 -0.02 1.04 16
10 C 0.08 0.79 3.38 -65.57 -0.22 0.57 16
11 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16
12 N -0.66 -9.16 6.04 -105.73 -0.64 -9.79 16
13 C 0.05 0.78 6.03 -4.98 -0.03 0.75 16
14 C 0.44 9.76 7.82 -10.98 -0.09 9.68 16
15 O -0.58 -15.07 15.78 5.55 0.09 -14.99 16
16 N -0.56 -13.65 5.29 -10.96 -0.06 -13.71 16
17 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16
18 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16
19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16
20 N -0.90 -23.88 13.05 55.50 0.72 -23.16 16
21 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16
22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
25 C -0.13 -1.20 5.89 -24.90 -0.15 -1.35 16
26 C 0.14 1.40 3.50 -66.95 -0.23 1.17 16
27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16
28 C -0.16 -1.58 9.05 37.16 0.34 -1.25 16
29 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16
30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16
31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
34 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16
35 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16
36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16
37 H 0.11 0.87 7.85 -51.92 -0.41 0.46 16
38 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
39 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16
40 H 0.36 5.17 8.14 -39.29 -0.32 4.85 16
41 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16
42 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16
43 H 0.39 9.08 7.90 -40.82 -0.32 8.75 16
44 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16
45 H 0.08 0.67 7.83 -51.93 -0.41 0.26 16
46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16
47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
48 H 0.07 0.84 6.76 -51.93 -0.35 0.49 16
49 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
LS Contribution 413.19 15.07 6.23 6.23
Total: -1.00 -32.11 413.19 -9.89 -42.00
By element:
Atomic # 1 Polarization: 18.94 SS G_CDS: -8.45 Total: 10.49 kcal
Atomic # 6 Polarization: 6.63 SS G_CDS: -0.10 Total: 6.53 kcal
Atomic # 7 Polarization: -53.21 SS G_CDS: -0.47 Total: -53.69 kcal
Atomic # 8 Polarization: -23.02 SS G_CDS: 0.17 Total: -22.85 kcal
Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal
Atomic # 16 Polarization: -2.00 SS G_CDS: -2.24 Total: -4.24 kcal
Total LS contribution 6.23 Total: 6.23 kcal
Total: -32.11 -9.89 -42.00 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734410971.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.724 kcal
(2) G-P(sol) polarization free energy of solvation -32.106 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.830 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.724 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds