Wall clock time and date at job start Sat Apr 11 2020 06:53:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53004 * 109.46930 * 2 1
4 4 S 1.81399 * 109.46965 * 180.02562 * 3 2 1
5 5 C 1.81399 * 102.99928 * 180.02562 * 4 3 2
6 6 C 1.50699 * 109.47177 * 180.02562 * 5 4 3
7 7 O 1.21281 * 120.00458 * 359.97438 * 6 5 4
8 8 N 1.34783 * 119.99902 * 179.97438 * 6 5 4
9 9 C 1.47426 * 125.65102 * 359.97438 * 8 6 5
10 10 C 1.54902 * 104.83376 * 204.14477 * 9 8 6
11 11 H 1.09003 * 111.03591 * 81.07772 * 10 9 8
12 12 N 1.46895 * 111.00895 * 204.91165 * 10 9 8
13 13 C 1.46893 * 111.00318 * 267.20018 * 12 10 9
14 14 C 1.50708 * 109.47146 * 179.97438 * 13 12 10
15 15 O 1.21288 * 119.99815 * 359.97438 * 14 13 12
16 16 N 1.34774 * 119.99719 * 180.02562 * 14 13 12
17 17 C 1.37101 * 119.99349 * 180.02562 * 16 14 13
18 18 H 1.07991 * 120.00515 * 359.97438 * 17 16 14
19 19 C 1.38955 * 119.99490 * 179.97438 * 17 16 14
20 20 N 1.31413 * 120.00236 * 359.97438 * 19 17 16
21 21 Si 1.86803 * 119.99845 * 179.97438 * 19 17 16
22 22 H 1.48498 * 109.47174 * 270.00316 * 21 19 17
23 23 H 1.48501 * 109.47062 * 30.00267 * 21 19 17
24 24 H 1.48504 * 109.46913 * 150.00066 * 21 19 17
25 25 C 1.55154 * 101.58416 * 322.99191 * 10 9 8
26 26 C 1.47028 * 125.64662 * 179.97438 * 8 6 5
27 27 H 1.08996 * 110.01252 * 298.41502 * 26 8 6
28 28 C 1.53003 * 109.87713 * 59.50738 * 26 8 6
29 29 H 1.09009 * 109.46931 * 299.99832 * 1 2 3
30 30 H 1.08996 * 109.47611 * 59.99697 * 1 2 3
31 31 H 1.09001 * 109.47050 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47150 * 240.00334 * 2 1 3
33 33 H 1.09001 * 109.47128 * 119.99789 * 2 1 3
34 34 H 1.09000 * 109.46931 * 60.00201 * 3 2 1
35 35 H 1.09001 * 109.47042 * 299.99841 * 3 2 1
36 36 H 1.08998 * 109.47606 * 59.99741 * 5 4 3
37 37 H 1.09009 * 109.47151 * 299.99941 * 5 4 3
38 38 H 1.08995 * 110.36600 * 85.30405 * 9 8 6
39 39 H 1.08996 * 110.36294 * 322.98911 * 9 8 6
40 40 H 1.00899 * 111.00063 * 143.24194 * 12 10 9
41 41 H 1.09002 * 109.47091 * 59.99845 * 13 12 10
42 42 H 1.09000 * 109.47343 * 299.99463 * 13 12 10
43 43 H 0.96996 * 120.00564 * 359.97438 * 16 14 13
44 44 H 0.97001 * 119.99781 * 179.97438 * 20 19 17
45 45 H 1.09005 * 110.72372 * 153.86337 * 25 10 9
46 46 H 1.08999 * 110.72074 * 276.96377 * 25 10 9
47 47 H 1.09003 * 109.46655 * 177.80494 * 28 26 8
48 48 H 1.08990 * 109.47287 * 297.80438 * 28 26 8
49 49 H 1.08996 * 109.47198 * 57.81090 * 28 26 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 16 3.8539 1.4426 -0.0008
5 6 4.2620 3.2101 0.0001
6 6 5.7593 3.3800 -0.0010
7 8 6.4804 2.4047 -0.0019
8 7 6.2974 4.6157 -0.0012
9 6 5.5420 5.8818 -0.0008
10 6 6.5119 6.9225 -0.6136
11 1 6.5133 6.8627 -1.7020
12 7 6.1793 8.2809 -0.1643
13 6 5.2726 8.9418 -1.1123
14 6 4.9541 10.3296 -0.6186
15 8 5.4348 10.7286 0.4210
16 7 4.1343 11.1269 -1.3318
17 6 3.8450 12.3897 -0.8828
18 1 4.2737 12.7453 0.0424
19 6 3.0002 13.2119 -1.6184
20 7 2.4789 12.7794 -2.7445
21 14 2.6054 14.9321 -1.0064
22 1 1.3994 14.8851 -0.1412
23 1 3.7549 15.4555 -0.2253
24 1 2.3483 15.8232 -2.1662
25 6 7.8734 6.4612 -0.0296
26 6 7.7349 4.9245 -0.0017
27 1 8.2023 4.5262 0.8988
28 6 8.3963 4.3199 -1.2419
29 1 -0.3633 0.5139 0.8901
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 1.6766 1.9563 0.8900
35 1 1.6766 1.9564 -0.8900
36 1 3.8434 3.6792 0.8905
37 1 3.8426 3.6802 -0.8895
38 1 5.2762 6.1646 1.0177
39 1 4.6467 5.7894 -0.6155
40 1 7.0143 8.8289 -0.0206
41 1 4.3510 8.3657 -1.1954
42 1 5.7513 9.0045 -2.0895
43 1 3.7495 10.8077 -2.1630
44 1 1.8889 13.3533 -3.2577
45 1 8.6942 6.7629 -0.6803
46 1 8.0152 6.8563 0.9763
47 1 9.4534 4.5856 -1.2558
48 1 8.2946 3.2351 -1.2156
49 1 7.9123 4.7087 -2.1378
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001734410971.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:53:52
Heat of formation + Delta-G solvation = -98.145367 kcal
Electronic energy + Delta-G solvation = -27145.937431 eV
Core-core repulsion = 23232.901657 eV
Total energy + Delta-G solvation = -3913.035774 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.38534 -40.12352 -38.89137 -36.24275 -35.59871 -35.54206 -33.48053 -33.23814
-31.07009 -30.46469 -28.14831 -27.89135 -26.89248 -25.77844 -23.49309 -22.51240
-21.68918 -21.07641 -20.19738 -19.87234 -18.38953 -17.68758 -17.54256 -17.17531
-16.74757 -16.68054 -16.32531 -16.22317 -15.98998 -15.68130 -15.12739 -14.99841
-14.78061 -14.55165 -14.44757 -14.32623 -14.10649 -13.91703 -13.74396 -13.51191
-13.41133 -13.26762 -13.05996 -12.96996 -12.81540 -12.40224 -12.39797 -12.13214
-12.12127 -12.06491 -12.01548 -11.72838 -11.64500 -11.48852 -11.04287 -10.90952
-10.32064 -9.99545 -9.80037 -9.38972 -8.72200 -8.45470 -5.93576 0.41417
1.39005 1.43371 1.44983 1.55273 1.56111 1.87153 2.08041 2.30153
2.86151 3.22512 3.27160 3.45436 3.60432 3.71791 3.89266 3.94379
3.95071 4.03060 4.18277 4.22216 4.29189 4.34626 4.37314 4.38479
4.52619 4.55192 4.58738 4.63832 4.67051 4.67935 4.84475 4.85397
4.92000 4.99156 5.05679 5.14565 5.19048 5.23554 5.37910 5.38040
5.42995 5.89690 6.10331 6.32984 6.38970 6.61897 6.98441 7.14758
7.59032 8.14139 8.71710
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.010036 B = 0.002103 C = 0.001785
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2789.406302 B =13310.140434 C =15681.098833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.106 4.106
3 C -0.089 4.089
4 S -0.251 6.251
5 C -0.111 4.111
6 C 0.542 3.458
7 O -0.559 6.559
8 N -0.607 5.607
9 C 0.106 3.894
10 C 0.078 3.922
11 H 0.076 0.924
12 N -0.667 5.667
13 C 0.065 3.935
14 C 0.438 3.562
15 O -0.623 6.623
16 N -0.574 5.574
17 C -0.331 4.331
18 H 0.079 0.921
19 C -0.013 4.013
20 N -0.920 5.920
21 Si 0.990 3.010
22 H -0.272 1.272
23 H -0.273 1.273
24 H -0.272 1.272
25 C -0.122 4.122
26 C 0.137 3.863
27 H 0.071 0.929
28 C -0.156 4.156
29 H 0.060 0.940
30 H 0.060 0.940
31 H 0.066 0.934
32 H 0.066 0.934
33 H 0.066 0.934
34 H 0.091 0.909
35 H 0.092 0.908
36 H 0.126 0.874
37 H 0.129 0.871
38 H 0.080 0.920
39 H 0.091 0.909
40 H 0.353 0.647
41 H 0.107 0.893
42 H 0.070 0.930
43 H 0.397 0.603
44 H 0.277 0.723
45 H 0.102 0.898
46 H 0.087 0.913
47 H 0.083 0.917
48 H 0.046 0.954
49 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.119 -21.467 0.482 21.501
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.145 4.145
3 C -0.238 4.238
4 S -0.025 6.025
5 C -0.262 4.262
6 C 0.330 3.670
7 O -0.438 6.438
8 N -0.342 5.342
9 C -0.017 4.017
10 C -0.032 4.032
11 H 0.094 0.906
12 N -0.300 5.300
13 C -0.067 4.067
14 C 0.226 3.774
15 O -0.509 6.509
16 N -0.211 5.211
17 C -0.461 4.461
18 H 0.097 0.903
19 C -0.213 4.213
20 N -0.561 5.561
21 Si 0.814 3.186
22 H -0.197 1.197
23 H -0.198 1.198
24 H -0.197 1.197
25 C -0.160 4.160
26 C 0.033 3.967
27 H 0.089 0.911
28 C -0.214 4.214
29 H 0.079 0.921
30 H 0.080 0.920
31 H 0.085 0.915
32 H 0.085 0.915
33 H 0.085 0.915
34 H 0.109 0.891
35 H 0.110 0.890
36 H 0.145 0.855
37 H 0.147 0.853
38 H 0.098 0.902
39 H 0.109 0.891
40 H 0.174 0.826
41 H 0.125 0.875
42 H 0.088 0.912
43 H 0.231 0.769
44 H 0.086 0.914
45 H 0.121 0.879
46 H 0.106 0.894
47 H 0.102 0.898
48 H 0.066 0.934
49 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 1.866 -22.740 1.445 22.863
hybrid contribution -0.648 2.078 -0.839 2.333
sum 1.218 -20.663 0.606 20.707
Atomic orbital electron populations
1.21746 0.93302 1.02745 1.02531 1.21238 0.97007 0.93334 1.02934
1.23613 0.91724 1.02416 1.06007 1.87669 1.08598 1.07951 1.98260
1.23436 0.95625 0.98216 1.08891 1.19668 0.89700 0.81636 0.75950
1.90717 1.63075 1.38869 1.51129 1.48480 1.08116 1.05141 1.72440
1.22480 0.95199 0.81493 1.02533 1.22628 0.94501 0.87838 0.98269
0.90610 1.59914 1.20581 1.02509 1.47032 1.21622 0.99351 0.91316
0.94446 1.20897 0.82387 0.88483 0.85653 1.90505 1.56812 1.76946
1.26646 1.41936 1.42575 1.13439 1.23178 1.19645 1.27590 0.91138
1.07737 0.90309 1.26001 0.96093 1.03522 0.95673 1.69663 1.32527
1.39169 1.14731 0.84966 0.78583 0.77171 0.77871 1.19734 1.19795
1.19717 1.22900 0.97276 0.92381 1.03470 1.21581 0.80513 0.95391
0.99175 0.91088 1.22092 1.01484 1.00938 0.96917 0.92087 0.92046
0.91474 0.91484 0.91530 0.89067 0.88975 0.85548 0.85254 0.90221
0.89076 0.82628 0.87467 0.91219 0.76941 0.91365 0.87926 0.89435
0.89796 0.93442 0.92235
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.30 9.91 71.98 0.71 -0.59 16
2 C -0.11 -1.30 5.94 30.60 0.18 -1.12 16
3 C -0.09 -1.19 5.94 71.98 0.43 -0.77 16
4 S -0.25 -5.23 20.87 -56.49 -1.18 -6.41 16
5 C -0.11 -1.94 5.43 71.24 0.39 -1.56 16
6 C 0.54 12.67 7.65 87.66 0.67 13.34 16
7 O -0.56 -17.33 14.77 -3.03 -0.04 -17.38 16
8 N -0.61 -12.09 3.08 -788.05 -2.43 -14.51 16
9 C 0.11 1.88 6.39 86.85 0.55 2.44 16
10 C 0.08 1.43 3.38 46.30 0.16 1.59 16
11 H 0.08 1.27 7.83 -2.39 -0.02 1.25 16
12 N -0.67 -17.13 6.04 -488.43 -2.95 -20.07 16
13 C 0.06 1.89 6.03 85.56 0.52 2.40 16
14 C 0.44 19.20 7.82 87.66 0.69 19.89 16
15 O -0.62 -32.39 15.78 -3.05 -0.05 -32.44 16
16 N -0.57 -27.79 5.29 -306.98 -1.62 -29.41 16
17 C -0.33 -18.13 9.68 84.04 0.81 -17.32 16
18 H 0.08 4.62 7.16 -2.92 -0.02 4.59 16
19 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16
20 N -0.92 -48.09 13.05 21.66 0.28 -47.80 16
21 Si 0.99 41.74 29.55 68.60 2.03 43.77 16
22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16
25 C -0.12 -1.95 5.89 31.78 0.19 -1.76 16
26 C 0.14 2.54 3.50 45.34 0.16 2.70 16
27 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
28 C -0.16 -2.82 9.05 71.98 0.65 -2.16 16
29 H 0.06 0.51 8.14 -2.38 -0.02 0.50 16
30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16
31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16
32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
36 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16
37 H 0.13 1.72 7.85 -2.39 -0.02 1.70 16
38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
39 H 0.09 1.32 7.47 -2.39 -0.02 1.30 16
40 H 0.35 9.64 8.14 -89.69 -0.73 8.91 16
41 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16
42 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16
43 H 0.40 18.15 7.90 -92.71 -0.73 17.41 16
44 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16
45 H 0.10 1.31 7.83 -2.38 -0.02 1.29 16
46 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16
47 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16
48 H 0.05 1.11 6.76 -2.39 -0.02 1.09 16
49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
Total: -1.00 -70.54 413.19 0.10 -70.45
By element:
Atomic # 1 Polarization: 37.46 SS G_CDS: -0.51 Total: 36.94 kcal
Atomic # 6 Polarization: 10.30 SS G_CDS: 6.57 Total: 16.87 kcal
Atomic # 7 Polarization: -105.08 SS G_CDS: -6.72 Total: -111.80 kcal
Atomic # 8 Polarization: -49.72 SS G_CDS: -0.09 Total: -49.81 kcal
Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal
Atomic # 16 Polarization: -5.23 SS G_CDS: -1.18 Total: -6.41 kcal
Total: -70.54 0.10 -70.45 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734410971.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.699 kcal
(2) G-P(sol) polarization free energy of solvation -70.542 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.241 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds