Wall clock time and date at job start Sat Apr 11 2020 06:54:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42905 * 113.99594 * 2 1
4 4 H 1.08999 * 109.47418 * 29.99165 * 3 2 1
5 5 C 1.53007 * 109.46694 * 269.99387 * 3 2 1
6 6 C 1.50695 * 109.47076 * 149.99898 * 3 2 1
7 7 N 1.29031 * 124.91380 * 224.99982 * 6 3 2
8 8 C 1.31782 * 117.12344 * 179.97438 * 7 6 3
9 9 C 1.50703 * 122.75062 * 179.97438 * 8 7 6
10 10 N 1.46899 * 109.47064 * 274.99848 * 9 8 7
11 11 C 1.46899 * 110.99418 * 179.97438 * 10 9 8
12 12 C 1.53003 * 109.46670 * 180.02562 * 11 10 9
13 13 H 1.09004 * 109.47236 * 60.00258 * 12 11 10
14 14 O 1.42900 * 109.47273 * 300.00165 * 12 11 10
15 15 C 1.53002 * 109.47345 * 179.97438 * 12 11 10
16 16 N 1.46893 * 109.47513 * 180.45993 * 15 12 11
17 17 C 1.46900 * 111.00204 * 199.85130 * 16 15 12
18 18 C 1.46901 * 110.99844 * 75.89918 * 16 15 12
19 19 C 1.50699 * 109.47449 * 189.99934 * 18 16 15
20 20 H 1.07996 * 119.99507 * 0.02562 * 19 18 16
21 21 C 1.37874 * 120.00069 * 180.02562 * 19 18 16
22 22 N 1.31510 * 120.00074 * 359.97438 * 21 19 18
23 23 Si 1.86809 * 119.99945 * 180.02562 * 21 19 18
24 24 H 1.48500 * 109.47009 * 89.99922 * 23 21 19
25 25 H 1.48496 * 109.46756 * 209.99486 * 23 21 19
26 26 H 1.48493 * 109.46969 * 329.99784 * 23 21 19
27 27 C 1.33646 * 114.49953 * 359.97438 * 8 7 6
28 28 S 1.70975 * 124.91822 * 44.68926 * 6 3 2
29 29 H 1.08993 * 109.47681 * 300.00307 * 1 2 3
30 30 H 1.09001 * 109.46828 * 60.01012 * 1 2 3
31 31 H 1.09000 * 109.47197 * 180.02562 * 1 2 3
32 32 H 1.08994 * 109.46844 * 60.00161 * 5 3 2
33 33 H 1.09002 * 109.46932 * 180.02562 * 5 3 2
34 34 H 1.08999 * 109.47006 * 300.00030 * 5 3 2
35 35 H 1.08998 * 109.46709 * 35.00111 * 9 8 7
36 36 H 1.08998 * 109.46928 * 154.99512 * 9 8 7
37 37 H 1.00900 * 110.99858 * 303.95061 * 10 9 8
38 38 H 1.08995 * 109.47673 * 299.99575 * 11 10 9
39 39 H 1.08994 * 109.47465 * 60.00585 * 11 10 9
40 40 H 0.96700 * 114.00140 * 299.99719 * 14 12 11
41 41 H 1.08998 * 109.47194 * 300.46752 * 15 12 11
42 42 H 1.09010 * 109.46542 * 60.46112 * 15 12 11
43 43 H 1.09001 * 109.46523 * 64.82852 * 17 16 15
44 44 H 1.09005 * 109.46886 * 184.82036 * 17 16 15
45 45 H 1.08993 * 109.47369 * 304.82426 * 17 16 15
46 46 H 1.08994 * 109.47230 * 310.00408 * 18 16 15
47 47 H 1.09001 * 109.46734 * 69.99892 * 18 16 15
48 48 H 0.97002 * 119.99951 * 180.02562 * 22 21 19
49 49 H 1.07998 * 126.03072 * 180.02562 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3448 1.9995 0.5137
5 6 2.2177 1.7713 -1.4426
6 6 3.3385 1.2641 0.7104
7 7 3.7373 2.1281 1.5818
8 6 4.9305 1.9426 2.1093
9 6 5.5212 2.8732 3.1371
10 7 6.1767 3.9993 2.4587
11 6 6.7648 4.9296 3.4317
12 6 7.4362 6.0867 2.6893
13 1 6.6942 6.6115 2.0874
14 8 8.4638 5.5746 1.8385
15 6 8.0482 7.0561 3.7025
16 7 8.6832 8.1728 2.9901
17 6 9.6614 8.8559 3.8471
18 6 7.6764 9.1159 2.4854
19 6 8.3348 10.1059 1.5594
20 1 9.3951 10.0406 1.3649
21 6 7.5835 11.0947 0.9605
22 7 6.2923 11.1738 1.1969
23 14 8.3996 12.3215 -0.1879
24 1 8.3642 11.7982 -1.5772
25 1 7.6729 13.6151 -0.1276
26 1 9.8103 12.5262 0.2281
27 6 5.5739 0.8615 1.6582
28 16 4.5323 0.0612 0.4841
29 1 -0.3634 0.5138 0.8899
30 1 -0.3633 0.5137 -0.8901
31 1 -0.3633 -1.0277 0.0005
32 1 1.2569 1.8013 -1.9564
33 1 2.6614 2.7670 -1.4426
34 1 2.8830 1.0774 -1.9563
35 1 4.7289 3.2499 3.7840
36 1 6.2542 2.3338 3.7369
37 1 6.8719 3.6723 1.8047
38 1 5.9809 5.3207 4.0802
39 1 7.5064 4.4048 4.0338
40 1 9.1599 5.0945 2.3077
41 1 7.2654 7.4404 4.3563
42 1 8.7960 6.5336 4.2993
43 1 10.4792 8.1738 4.0800
44 1 10.0539 9.7291 3.3259
45 1 9.1771 9.1715 4.7711
46 1 6.9053 8.5685 1.9433
47 1 7.2240 9.6470 3.3229
48 1 5.7637 11.8693 0.7753
49 1 6.5571 0.5343 1.9627
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000562989970.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:43
Heat of formation + Delta-G solvation = -40.538957 kcal
Electronic energy + Delta-G solvation = -27140.446274 eV
Core-core repulsion = 23229.908501 eV
Total energy + Delta-G solvation = -3910.537773 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.24825 -38.59986 -38.13263 -35.98181 -34.88034 -32.78824 -32.43629 -30.59329
-29.32940 -27.32654 -27.27902 -26.82909 -25.40094 -24.37475 -23.10484 -21.83834
-21.44720 -20.06876 -19.92519 -18.28106 -16.74312 -16.58306 -16.43609 -16.13835
-15.83482 -15.75958 -15.24424 -14.85573 -14.69522 -14.37854 -14.24439 -14.10710
-13.78777 -13.31008 -13.29257 -13.10892 -13.02534 -12.78812 -12.60723 -12.29800
-12.07549 -11.93968 -11.79944 -11.48583 -11.37772 -11.30407 -11.11575 -10.86950
-10.67813 -10.57601 -10.31123 -10.27248 -9.80699 -9.72129 -9.60713 -9.57737
-9.11199 -9.00509 -8.41903 -8.36688 -7.16152 -5.96503 -3.96984 0.45167
1.15420 1.56715 2.49083 3.02805 3.36992 3.42442 3.45915 4.01780
4.15554 4.48264 4.49518 4.69181 4.74146 4.80027 4.88602 4.92174
4.96623 4.98343 5.06594 5.24208 5.27683 5.32270 5.34761 5.37250
5.39024 5.42645 5.58352 5.62402 5.75844 5.78882 5.83191 5.88035
6.06990 6.15962 6.35100 6.57605 6.61767 6.75390 6.92127 7.33275
7.36681 7.37495 7.57958 7.85310 8.10245 8.16692 8.26389 8.61066
9.10140 9.66534 11.14583
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012572 B = 0.002027 C = 0.001833
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2226.561215 B =13812.855488 C =15270.309608
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.383 6.383
3 C 0.163 3.837
4 H 0.093 0.907
5 C -0.170 4.170
6 C 0.043 3.957
7 N -0.446 5.446
8 C 0.079 3.921
9 C 0.134 3.866
10 N -0.675 5.675
11 C 0.031 3.969
12 C 0.117 3.883
13 H 0.111 0.889
14 O -0.540 6.540
15 C 0.027 3.973
16 N -0.531 5.531
17 C 0.038 3.962
18 C 0.192 3.808
19 C -0.504 4.504
20 H 0.063 0.937
21 C 0.054 3.946
22 N -0.899 5.899
23 Si 0.898 3.102
24 H -0.280 1.280
25 H -0.288 1.288
26 H -0.274 1.274
27 C -0.262 4.262
28 S 0.155 5.845
29 H 0.046 0.954
30 H 0.046 0.954
31 H 0.090 0.910
32 H 0.071 0.929
33 H 0.078 0.922
34 H 0.067 0.933
35 H 0.089 0.911
36 H 0.045 0.955
37 H 0.349 0.651
38 H 0.080 0.920
39 H 0.029 0.971
40 H 0.358 0.642
41 H 0.033 0.967
42 H 0.058 0.942
43 H 0.043 0.957
44 H 0.077 0.923
45 H 0.007 0.993
46 H 0.032 0.968
47 H -0.012 1.012
48 H 0.260 0.740
49 H 0.177 0.823
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.206 -26.312 1.960 27.351
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.302 6.302
3 C 0.101 3.899
4 H 0.111 0.889
5 C -0.228 4.228
6 C -0.235 4.235
7 N -0.161 5.161
8 C -0.054 4.054
9 C 0.002 3.998
10 N -0.307 5.307
11 C -0.099 4.099
12 C 0.057 3.943
13 H 0.129 0.871
14 O -0.342 6.342
15 C -0.103 4.103
16 N -0.255 5.255
17 C -0.111 4.111
18 C 0.067 3.933
19 C -0.543 4.543
20 H 0.081 0.919
21 C -0.147 4.147
22 N -0.539 5.539
23 Si 0.726 3.274
24 H -0.206 1.206
25 H -0.214 1.214
26 H -0.199 1.199
27 C -0.402 4.402
28 S 0.411 5.589
29 H 0.064 0.936
30 H 0.065 0.935
31 H 0.108 0.892
32 H 0.090 0.910
33 H 0.097 0.903
34 H 0.086 0.914
35 H 0.107 0.893
36 H 0.063 0.937
37 H 0.168 0.832
38 H 0.099 0.901
39 H 0.047 0.953
40 H 0.203 0.797
41 H 0.051 0.949
42 H 0.076 0.924
43 H 0.062 0.938
44 H 0.095 0.905
45 H 0.026 0.974
46 H 0.050 0.950
47 H 0.006 0.994
48 H 0.070 0.930
49 H 0.194 0.806
Dipole moment (debyes) X Y Z Total
from point charges -8.246 -26.382 0.482 27.645
hybrid contribution 1.102 1.108 1.550 2.201
sum -7.144 -25.274 2.032 26.343
Atomic orbital electron populations
1.22846 0.79905 1.03171 1.00518 1.87897 1.20551 1.26576 1.95146
1.20314 0.88552 0.85823 0.95170 0.88894 1.22297 1.03278 1.02799
0.94428 1.26655 1.01145 0.95832 0.99877 1.65980 1.14988 1.26634
1.08504 1.20081 0.89946 0.95451 0.99940 1.20408 0.97751 0.89490
0.92124 1.60236 1.36104 1.16270 1.18128 1.22690 0.98190 0.94637
0.94340 1.21974 0.89337 0.91005 0.92005 0.87116 1.86713 1.36334
1.74910 1.36287 1.22656 0.97617 0.94904 0.95146 1.62024 1.17889
1.10872 1.34687 1.22225 0.95100 0.99057 0.94708 1.19772 0.89800
0.89528 0.94191 1.21150 0.95354 1.11442 1.26320 0.91900 1.24991
0.94855 0.97917 0.96955 1.69960 1.05581 1.34148 1.44202 0.86501
0.79300 0.80340 0.81279 1.20606 1.21401 1.19925 1.27009 1.06058
1.01663 1.05452 1.83957 1.08566 1.27931 1.38494 0.93559 0.93499
0.89175 0.91046 0.90341 0.91352 0.89304 0.93690 0.83212 0.90127
0.95285 0.79741 0.94866 0.92374 0.93843 0.90463 0.97433 0.94999
0.99410 0.92991 0.80612
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 10.82 101.05 1.09 1.28 16
2 O -0.38 -3.46 10.17 -35.23 -0.36 -3.81 16
3 C 0.16 1.54 3.24 -27.88 -0.09 1.45 16
4 H 0.09 0.85 7.79 -51.93 -0.40 0.45 16
5 C -0.17 -1.39 9.51 37.16 0.35 -1.03 16
6 C 0.04 0.50 6.35 -13.46 -0.09 0.41 16
7 N -0.45 -5.97 10.53 -8.06 -0.08 -6.06 16
8 C 0.08 0.95 6.25 -84.22 -0.53 0.42 16
9 C 0.13 1.49 6.12 -4.98 -0.03 1.46 16
10 N -0.67 -8.83 6.49 -115.06 -0.75 -9.58 16
11 C 0.03 0.40 5.39 -3.82 -0.02 0.38 16
12 C 0.12 1.93 3.30 -26.73 -0.09 1.84 16
13 H 0.11 2.28 6.78 -51.93 -0.35 1.93 16
14 O -0.54 -8.97 12.55 -35.23 -0.44 -9.41 16
15 C 0.03 0.46 4.66 -3.83 -0.02 0.45 16
16 N -0.53 -11.62 4.56 -244.37 -1.11 -12.74 16
17 C 0.04 0.74 9.37 60.06 0.56 1.31 16
18 C 0.19 5.13 4.55 -4.98 -0.02 5.11 16
19 C -0.50 -14.58 8.39 -34.44 -0.29 -14.87 16
20 H 0.06 1.81 7.17 -52.49 -0.38 1.43 16
21 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
22 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16
23 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16
24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
27 C -0.26 -2.58 11.11 29.12 0.32 -2.26 16
28 S 0.16 1.50 23.00 -107.50 -2.47 -0.97 16
29 H 0.05 0.25 8.08 -51.93 -0.42 -0.17 16
30 H 0.05 0.22 7.87 -51.93 -0.41 -0.19 16
31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.07 0.46 7.87 -51.93 -0.41 0.05 16
33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
35 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16
36 H 0.05 0.40 8.10 -51.93 -0.42 -0.02 16
37 H 0.35 4.52 8.11 -39.29 -0.32 4.20 16
38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16
39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16
40 H 0.36 4.40 9.05 45.56 0.41 4.82 16
41 H 0.03 0.59 8.00 -51.93 -0.42 0.18 16
42 H 0.06 0.85 7.94 -51.92 -0.41 0.44 16
43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
44 H 0.08 1.65 6.67 -51.93 -0.35 1.31 16
45 H 0.01 0.14 8.13 -51.93 -0.42 -0.28 16
46 H 0.03 0.92 6.63 -51.93 -0.34 0.57 16
47 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16
48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
49 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16
LS Contribution 415.63 15.07 6.26 6.26
Total: -1.00 -34.16 415.63 -9.75 -43.91
By element:
Atomic # 1 Polarization: 11.98 SS G_CDS: -7.58 Total: 4.41 kcal
Atomic # 6 Polarization: -3.65 SS G_CDS: 1.06 Total: -2.58 kcal
Atomic # 7 Polarization: -53.80 SS G_CDS: -1.21 Total: -55.01 kcal
Atomic # 8 Polarization: -12.43 SS G_CDS: -0.80 Total: -13.23 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal
Atomic # 16 Polarization: 1.50 SS G_CDS: -2.47 Total: -0.97 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -34.16 -9.75 -43.91 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000562989970.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.369 kcal
(2) G-P(sol) polarization free energy of solvation -34.156 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.787 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.539 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds