Wall clock time and date at job start Sat Apr 11 2020 06:54:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42900 * 1
3 3 C 1.42905 * 113.99594 * 2 1
4 4 H 1.08999 * 109.47418 * 29.99165 * 3 2 1
5 5 C 1.53007 * 109.46694 * 269.99387 * 3 2 1
6 6 C 1.50695 * 109.47076 * 149.99898 * 3 2 1
7 7 N 1.29031 * 124.91380 * 224.99982 * 6 3 2
8 8 C 1.31782 * 117.12344 * 179.97438 * 7 6 3
9 9 C 1.50703 * 122.75062 * 179.97438 * 8 7 6
10 10 N 1.46899 * 109.47064 * 274.99848 * 9 8 7
11 11 C 1.46899 * 110.99418 * 179.97438 * 10 9 8
12 12 C 1.53003 * 109.46670 * 180.02562 * 11 10 9
13 13 H 1.09004 * 109.47236 * 60.00258 * 12 11 10
14 14 O 1.42900 * 109.47273 * 300.00165 * 12 11 10
15 15 C 1.53002 * 109.47345 * 179.97438 * 12 11 10
16 16 N 1.46893 * 109.47513 * 180.45993 * 15 12 11
17 17 C 1.46900 * 111.00204 * 199.85130 * 16 15 12
18 18 C 1.46901 * 110.99844 * 75.89918 * 16 15 12
19 19 C 1.50699 * 109.47449 * 189.99934 * 18 16 15
20 20 H 1.07996 * 119.99507 * 0.02562 * 19 18 16
21 21 C 1.37874 * 120.00069 * 180.02562 * 19 18 16
22 22 N 1.31510 * 120.00074 * 359.97438 * 21 19 18
23 23 Si 1.86809 * 119.99945 * 180.02562 * 21 19 18
24 24 H 1.48500 * 109.47009 * 89.99922 * 23 21 19
25 25 H 1.48496 * 109.46756 * 209.99486 * 23 21 19
26 26 H 1.48493 * 109.46969 * 329.99784 * 23 21 19
27 27 C 1.33646 * 114.49953 * 359.97438 * 8 7 6
28 28 S 1.70975 * 124.91822 * 44.68926 * 6 3 2
29 29 H 1.08993 * 109.47681 * 300.00307 * 1 2 3
30 30 H 1.09001 * 109.46828 * 60.01012 * 1 2 3
31 31 H 1.09000 * 109.47197 * 180.02562 * 1 2 3
32 32 H 1.08994 * 109.46844 * 60.00161 * 5 3 2
33 33 H 1.09002 * 109.46932 * 180.02562 * 5 3 2
34 34 H 1.08999 * 109.47006 * 300.00030 * 5 3 2
35 35 H 1.08998 * 109.46709 * 35.00111 * 9 8 7
36 36 H 1.08998 * 109.46928 * 154.99512 * 9 8 7
37 37 H 1.00900 * 110.99858 * 303.95061 * 10 9 8
38 38 H 1.08995 * 109.47673 * 299.99575 * 11 10 9
39 39 H 1.08994 * 109.47465 * 60.00585 * 11 10 9
40 40 H 0.96700 * 114.00140 * 299.99719 * 14 12 11
41 41 H 1.08998 * 109.47194 * 300.46752 * 15 12 11
42 42 H 1.09010 * 109.46542 * 60.46112 * 15 12 11
43 43 H 1.09001 * 109.46523 * 64.82852 * 17 16 15
44 44 H 1.09005 * 109.46886 * 184.82036 * 17 16 15
45 45 H 1.08993 * 109.47369 * 304.82426 * 17 16 15
46 46 H 1.08994 * 109.47230 * 310.00408 * 18 16 15
47 47 H 1.09001 * 109.46734 * 69.99892 * 18 16 15
48 48 H 0.97002 * 119.99951 * 180.02562 * 22 21 19
49 49 H 1.07998 * 126.03072 * 180.02562 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3448 1.9995 0.5137
5 6 2.2177 1.7713 -1.4426
6 6 3.3385 1.2641 0.7104
7 7 3.7373 2.1281 1.5818
8 6 4.9305 1.9426 2.1093
9 6 5.5212 2.8732 3.1371
10 7 6.1767 3.9993 2.4587
11 6 6.7648 4.9296 3.4317
12 6 7.4362 6.0867 2.6893
13 1 6.6942 6.6115 2.0874
14 8 8.4638 5.5746 1.8385
15 6 8.0482 7.0561 3.7025
16 7 8.6832 8.1728 2.9901
17 6 9.6614 8.8559 3.8471
18 6 7.6764 9.1159 2.4854
19 6 8.3348 10.1059 1.5594
20 1 9.3951 10.0406 1.3649
21 6 7.5835 11.0947 0.9605
22 7 6.2923 11.1738 1.1969
23 14 8.3996 12.3215 -0.1879
24 1 8.3642 11.7982 -1.5772
25 1 7.6729 13.6151 -0.1276
26 1 9.8103 12.5262 0.2281
27 6 5.5739 0.8615 1.6582
28 16 4.5323 0.0612 0.4841
29 1 -0.3634 0.5138 0.8899
30 1 -0.3633 0.5137 -0.8901
31 1 -0.3633 -1.0277 0.0005
32 1 1.2569 1.8013 -1.9564
33 1 2.6614 2.7670 -1.4426
34 1 2.8830 1.0774 -1.9563
35 1 4.7289 3.2499 3.7840
36 1 6.2542 2.3338 3.7369
37 1 6.8719 3.6723 1.8047
38 1 5.9809 5.3207 4.0802
39 1 7.5064 4.4048 4.0338
40 1 9.1599 5.0945 2.3077
41 1 7.2654 7.4404 4.3563
42 1 8.7960 6.5336 4.2993
43 1 10.4792 8.1738 4.0800
44 1 10.0539 9.7291 3.3259
45 1 9.1771 9.1715 4.7711
46 1 6.9053 8.5685 1.9433
47 1 7.2240 9.6470 3.3229
48 1 5.7637 11.8693 0.7753
49 1 6.5571 0.5343 1.9627
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000562989970.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:54:42
Heat of formation + Delta-G solvation = -69.494534 kcal
Electronic energy + Delta-G solvation = -27141.701882 eV
Core-core repulsion = 23229.908501 eV
Total energy + Delta-G solvation = -3911.793381 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.06589 -39.58057 -39.17284 -37.46202 -36.05747 -34.60480 -33.53913 -31.64036
-30.42993 -29.31608 -27.94484 -27.80252 -26.46055 -25.66733 -24.63969 -22.78145
-22.60592 -21.70457 -20.77854 -19.10026 -18.60535 -17.46945 -17.40393 -17.23931
-17.06324 -16.57339 -16.50323 -16.29667 -15.96503 -15.63626 -15.42992 -15.17531
-14.93288 -14.76157 -14.37908 -14.00266 -13.96607 -13.84348 -13.66952 -13.55583
-13.24613 -13.13952 -12.96289 -12.77555 -12.63164 -12.55577 -12.52694 -12.29576
-12.21388 -12.13568 -12.02959 -11.52070 -11.32733 -10.88906 -10.79101 -10.61751
-10.60972 -10.38008 -9.82225 -9.33798 -8.94013 -8.20145 -6.29895 -0.33874
0.39313 0.77376 1.39361 1.42276 1.52689 1.64764 2.36402 2.40291
3.03032 3.12544 3.34253 3.51134 3.71730 3.73132 4.00730 4.01904
4.03586 4.15040 4.19315 4.30699 4.34996 4.44172 4.47364 4.53118
4.53515 4.57810 4.63617 4.66254 4.73312 4.77912 4.79012 4.81707
4.85794 5.07096 5.09306 5.13708 5.14556 5.26226 5.31176 5.64852
5.98352 6.01840 6.07709 6.35738 6.40927 6.65863 6.77340 6.86418
7.08085 7.39382 8.91143
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012572 B = 0.002027 C = 0.001833
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2226.561215 B =13812.855488 C =15270.309608
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.396 6.396
3 C 0.163 3.837
4 H 0.089 0.911
5 C -0.165 4.165
6 C 0.022 3.978
7 N -0.482 5.482
8 C 0.053 3.947
9 C 0.140 3.860
10 N -0.695 5.695
11 C 0.047 3.953
12 C 0.127 3.873
13 H 0.057 0.943
14 O -0.558 6.558
15 C 0.027 3.973
16 N -0.541 5.541
17 C 0.039 3.961
18 C 0.210 3.790
19 C -0.522 4.522
20 H 0.062 0.938
21 C -0.003 4.003
22 N -0.936 5.936
23 Si 0.970 3.030
24 H -0.275 1.275
25 H -0.281 1.281
26 H -0.262 1.262
27 C -0.253 4.253
28 S 0.185 5.815
29 H 0.047 0.953
30 H 0.059 0.941
31 H 0.106 0.894
32 H 0.089 0.911
33 H 0.064 0.936
34 H 0.069 0.931
35 H 0.077 0.923
36 H 0.075 0.925
37 H 0.349 0.651
38 H 0.076 0.924
39 H 0.065 0.935
40 H 0.379 0.621
41 H 0.027 0.973
42 H 0.100 0.900
43 H 0.083 0.917
44 H 0.053 0.947
45 H 0.012 0.988
46 H 0.000 1.000
47 H -0.042 1.042
48 H 0.264 0.736
49 H 0.205 0.795
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.547 -27.949 2.139 28.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.315 6.315
3 C 0.101 3.899
4 H 0.106 0.894
5 C -0.223 4.223
6 C -0.255 4.255
7 N -0.199 5.199
8 C -0.080 4.080
9 C 0.009 3.991
10 N -0.329 5.329
11 C -0.083 4.083
12 C 0.066 3.934
13 H 0.075 0.925
14 O -0.363 6.363
15 C -0.102 4.102
16 N -0.265 5.265
17 C -0.109 4.109
18 C 0.083 3.917
19 C -0.560 4.560
20 H 0.080 0.920
21 C -0.200 4.200
22 N -0.577 5.577
23 Si 0.795 3.205
24 H -0.201 1.201
25 H -0.206 1.206
26 H -0.186 1.186
27 C -0.393 4.393
28 S 0.440 5.560
29 H 0.065 0.935
30 H 0.077 0.923
31 H 0.124 0.876
32 H 0.108 0.892
33 H 0.083 0.917
34 H 0.088 0.912
35 H 0.095 0.905
36 H 0.093 0.907
37 H 0.168 0.832
38 H 0.095 0.905
39 H 0.083 0.917
40 H 0.227 0.773
41 H 0.045 0.955
42 H 0.118 0.882
43 H 0.101 0.899
44 H 0.072 0.928
45 H 0.030 0.970
46 H 0.018 0.982
47 H -0.024 1.024
48 H 0.072 0.928
49 H 0.222 0.778
Dipole moment (debyes) X Y Z Total
from point charges -6.573 -28.047 0.683 28.815
hybrid contribution 0.577 1.506 1.504 2.205
sum -5.996 -26.542 2.186 27.298
Atomic orbital electron populations
1.23058 0.78373 1.04452 1.01208 1.87866 1.22244 1.26178 1.95250
1.20326 0.87958 0.86109 0.95471 0.89365 1.22258 1.04221 1.01880
0.93968 1.27007 1.02354 0.96266 0.99904 1.65979 1.16218 1.27987
1.09673 1.20265 0.90141 0.96601 1.00987 1.20390 0.97844 0.88992
0.91910 1.60150 1.36474 1.17418 1.18835 1.22458 0.98573 0.93453
0.93832 1.21656 0.88585 0.92027 0.91088 0.92490 1.86660 1.37149
1.75309 1.37208 1.22782 0.98457 0.93674 0.95291 1.61932 1.17075
1.10756 1.36755 1.22250 0.95501 0.99176 0.93988 1.19361 0.90063
0.89537 0.92702 1.21486 0.95443 1.12244 1.26872 0.91965 1.25962
0.95431 1.00012 0.98622 1.70096 1.07154 1.35052 1.45352 0.85369
0.78738 0.77659 0.78775 1.20072 1.20609 1.18603 1.27353 1.06849
1.00640 1.04431 1.83791 1.07559 1.26763 1.37887 0.93466 0.92256
0.87605 0.89216 0.91712 0.91232 0.90454 0.90744 0.83168 0.90539
0.91716 0.77264 0.95510 0.88181 0.89863 0.92770 0.96974 0.98188
1.02432 0.92751 0.77800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.27 10.82 113.37 1.23 1.49 16
2 O -0.40 -6.94 10.17 -148.98 -1.52 -8.46 16
3 C 0.16 3.11 3.24 29.85 0.10 3.21 16
4 H 0.09 1.70 7.79 -2.39 -0.02 1.68 16
5 C -0.16 -2.69 9.51 71.98 0.68 -2.01 16
6 C 0.02 0.51 6.35 88.52 0.56 1.07 16
7 N -0.48 -13.14 10.53 -179.40 -1.89 -15.03 16
8 C 0.05 1.23 6.25 41.52 0.26 1.49 16
9 C 0.14 2.96 6.12 85.56 0.52 3.48 16
10 N -0.70 -17.80 6.49 -517.95 -3.36 -21.16 16
11 C 0.05 1.13 5.39 86.30 0.47 1.60 16
12 C 0.13 4.20 3.30 30.60 0.10 4.30 16
13 H 0.06 2.51 6.78 -2.39 -0.02 2.50 16
14 O -0.56 -17.99 12.55 -148.98 -1.87 -19.86 16
15 C 0.03 0.92 4.66 86.31 0.40 1.32 16
16 N -0.54 -23.72 4.56 -927.06 -4.23 -27.94 16
17 C 0.04 1.49 9.37 127.69 1.20 2.68 16
18 C 0.21 11.69 4.55 85.56 0.39 12.08 16
19 C -0.52 -30.94 8.39 25.60 0.21 -30.72 16
20 H 0.06 3.61 7.17 -2.91 -0.02 3.59 16
21 C 0.00 -0.16 5.46 84.65 0.46 0.30 16
22 N -0.94 -58.65 13.29 21.45 0.28 -58.37 16
23 Si 0.97 45.99 29.54 68.60 2.03 48.02 16
24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16
25 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16
26 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16
27 C -0.25 -4.55 11.11 66.78 0.74 -3.81 16
28 S 0.18 3.38 23.00 -56.49 -1.30 2.08 16
29 H 0.05 0.49 8.08 -2.39 -0.02 0.47 16
30 H 0.06 0.48 7.87 -2.39 -0.02 0.47 16
31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16
32 H 0.09 1.09 7.87 -2.39 -0.02 1.07 16
33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16
36 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16
37 H 0.35 8.72 8.11 -89.69 -0.73 7.99 16
38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
40 H 0.38 8.31 9.05 -74.06 -0.67 7.64 16
41 H 0.03 0.95 8.00 -2.39 -0.02 0.93 16
42 H 0.10 2.57 7.94 -2.38 -0.02 2.56 16
43 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16
44 H 0.05 2.30 6.67 -2.38 -0.02 2.28 16
45 H 0.01 0.44 8.13 -2.39 -0.02 0.42 16
46 H 0.00 0.00 6.63 -2.39 -0.02 -0.01 16
47 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16
48 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16
49 H 0.21 2.31 8.06 -2.91 -0.02 2.28 16
Total: -1.00 -77.09 415.63 -4.97 -82.06
By element:
Atomic # 1 Polarization: 22.62 SS G_CDS: -0.45 Total: 22.17 kcal
Atomic # 6 Polarization: -10.84 SS G_CDS: 7.33 Total: -3.51 kcal
Atomic # 7 Polarization: -113.31 SS G_CDS: -9.19 Total: -122.50 kcal
Atomic # 8 Polarization: -24.93 SS G_CDS: -3.39 Total: -28.32 kcal
Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal
Atomic # 16 Polarization: 3.38 SS G_CDS: -1.30 Total: 2.08 kcal
Total: -77.09 -4.97 -82.06 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000562989970.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.564 kcal
(2) G-P(sol) polarization free energy of solvation -77.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.523 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.058 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.495 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds