Wall clock time and date at job start Sat Apr 11 2020 06:55:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 109.47166 * 2 1
4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3
5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1
6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2
7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4
8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5
9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5
10 10 S 1.81002 * 109.47156 * 180.02562 * 9 7 6
11 11 C 1.76204 * 100.00151 * 180.02562 * 10 9 7
12 12 H 1.08000 * 119.99845 * 359.97438 * 11 10 9
13 13 C 1.38796 * 120.00054 * 180.02562 * 11 10 9
14 14 N 1.31627 * 120.00190 * 179.97438 * 13 11 10
15 15 Si 1.86796 * 119.99981 * 0.02562 * 13 11 10
16 16 H 1.48499 * 109.47522 * 90.00063 * 15 13 11
17 17 H 1.48504 * 109.47097 * 210.00185 * 15 13 11
18 18 H 1.48507 * 109.47328 * 329.99912 * 15 13 11
19 19 N 1.46502 * 109.46969 * 240.00729 * 2 1 3
20 20 C 1.34773 * 120.00306 * 84.99801 * 19 2 1
21 21 O 1.21292 * 119.99815 * 0.02562 * 20 19 2
22 22 C 1.50694 * 120.00409 * 179.97438 * 20 19 2
23 23 H 1.09004 * 110.28818 * 57.87787 * 22 20 19
24 24 C 1.54265 * 110.32886 * 180.02562 * 22 20 19
25 25 C 1.54371 * 105.06217 * 118.89686 * 24 22 20
26 26 N 1.48557 * 104.59493 * 23.85456 * 25 24 22
27 27 C 1.46902 * 111.00418 * 200.96090 * 26 25 24
28 28 C 1.48563 * 104.22414 * 320.51589 * 26 25 24
29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3
30 30 H 1.09000 * 109.47346 * 179.97438 * 1 2 3
31 31 H 1.09007 * 109.46964 * 299.99762 * 1 2 3
32 32 H 1.09002 * 109.47103 * 64.99566 * 4 2 1
33 33 H 1.08998 * 109.46862 * 305.00378 * 4 2 1
34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2
35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2
36 36 H 0.96996 * 119.99606 * 0.02562 * 6 5 4
37 37 H 1.09001 * 109.47380 * 300.00190 * 9 7 6
38 38 H 1.09002 * 109.47060 * 60.00278 * 9 7 6
39 39 H 0.96997 * 120.00635 * 179.97438 * 14 13 11
40 40 H 0.97003 * 120.00235 * 265.00555 * 19 2 1
41 41 H 1.08997 * 110.32314 * 237.79710 * 24 22 20
42 42 H 1.08996 * 110.32080 * 359.97438 * 24 22 20
43 43 H 1.09001 * 110.41623 * 142.63318 * 25 24 22
44 44 H 1.09005 * 110.41141 * 264.95683 * 25 24 22
45 45 H 1.08995 * 109.47044 * 59.86902 * 27 26 25
46 46 H 1.08993 * 109.47567 * 179.87901 * 27 26 25
47 47 H 1.09010 * 109.46799 * 299.87685 * 27 26 25
48 48 H 1.08989 * 110.41085 * 280.70411 * 28 26 25
49 49 H 1.09004 * 110.41349 * 158.25963 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7214 1.2491
5 6 3.5648 -0.6135 1.3135
6 7 4.0531 -1.3037 2.5099
7 6 5.3740 -1.3399 2.7750
8 8 6.1584 -0.8006 2.0235
9 6 5.8763 -2.0494 4.0060
10 16 7.6802 -1.9219 4.0822
11 6 7.9872 -2.8108 5.5723
12 1 7.1634 -3.2330 6.1287
13 6 9.2876 -2.9675 6.0315
14 7 9.5169 -3.6311 7.1449
15 14 10.7121 -2.2354 5.0703
16 1 10.9740 -0.8541 5.5483
17 1 11.9254 -3.0676 5.2726
18 1 10.3697 -2.2027 3.6256
19 7 2.0183 -0.6905 -1.1963
20 6 2.1470 -0.0181 -2.3572
21 8 1.8589 1.1589 -2.4114
22 6 2.6498 -0.7281 -3.5876
23 1 2.0076 -1.5768 -3.8232
24 6 2.7100 0.2465 -4.7818
25 6 4.1972 0.2845 -5.1940
26 7 4.7554 -1.0005 -4.7002
27 6 6.2158 -0.9218 -4.5622
28 6 4.1057 -1.1970 -3.3787
29 1 -0.3634 0.5140 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 0.8901
32 1 1.7516 -1.7716 1.2053
33 1 1.6054 -0.2620 2.1368
34 1 3.8532 0.4368 1.3572
35 1 3.9994 -1.0729 0.4257
36 1 3.4258 -1.7353 3.1108
37 1 5.4421 -1.5889 4.8935
38 1 5.5874 -3.0996 3.9633
39 1 10.4257 -3.7409 7.4657
40 1 2.2489 -1.6317 -1.1529
41 1 2.0985 -0.1244 -5.6043
42 1 2.3754 1.2384 -4.4781
43 1 4.2897 0.3476 -6.2782
44 1 4.7014 1.1271 -4.7206
45 1 6.4719 -0.1327 -3.8552
46 1 6.5983 -1.8749 -4.1972
47 1 6.6609 -0.6991 -5.5321
48 1 4.5961 -0.5877 -2.6197
49 1 4.1293 -2.2495 -3.0962
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001075677915.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:55:46
Heat of formation + Delta-G solvation = -81.901569 kcal
Electronic energy + Delta-G solvation = -27462.713773 eV
Core-core repulsion = 23550.382382 eV
Total energy + Delta-G solvation = -3912.331390 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 343.172 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.75355 -39.39241 -38.57747 -36.85698 -34.58447 -32.88913 -32.46689 -31.84855
-30.29307 -29.19839 -28.27044 -26.24285 -25.64686 -23.93239 -22.84802 -21.62669
-21.26396 -20.49506 -20.16308 -17.97863 -17.78187 -16.84438 -16.42867 -16.36496
-16.07488 -15.53282 -15.41654 -15.12175 -14.98722 -14.54542 -14.31972 -14.18887
-13.88912 -13.81039 -13.53741 -13.37887 -13.11142 -12.89420 -12.82270 -12.50341
-12.33737 -12.02288 -11.88726 -11.76943 -11.74370 -11.62007 -11.52964 -11.36170
-11.28694 -11.11215 -11.03272 -10.63665 -10.16153 -9.88638 -9.61923 -9.48645
-9.06913 -9.01027 -8.92394 -8.53468 -6.95187 -6.31579 -4.03660 2.25758
2.71671 2.73333 2.92005 3.25605 3.31537 3.48051 3.60211 3.65345
4.10742 4.19803 4.30352 4.32124 4.42122 4.48616 4.63997 4.71416
4.78064 4.90220 4.99277 5.00560 5.03830 5.07492 5.11032 5.13696
5.19591 5.26619 5.29819 5.30769 5.42635 5.50045 5.53349 5.61083
5.64476 5.70843 5.72752 5.73833 5.75745 5.82566 5.96774 6.11547
6.37286 6.44264 6.55315 7.09058 7.53640 7.84567 7.91435 8.38751
8.43069 9.14552 10.77616
Molecular weight = 343.17amu
Principal moments of inertia in cm(-1)
A = 0.012292 B = 0.002244 C = 0.001945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2277.346292 B =12473.022495 C =14394.158008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.145 3.855
3 H 0.092 0.908
4 C -0.140 4.140
5 C 0.122 3.878
6 N -0.738 5.738
7 C 0.530 3.470
8 O -0.519 6.519
9 C -0.124 4.124
10 S -0.142 6.142
11 C -0.522 4.522
12 H 0.088 0.912
13 C 0.095 3.905
14 N -0.880 5.880
15 Si 0.857 3.143
16 H -0.267 1.267
17 H -0.274 1.274
18 H -0.235 1.235
19 N -0.724 5.724
20 C 0.522 3.478
21 O -0.536 6.536
22 C -0.115 4.115
23 H 0.107 0.893
24 C -0.116 4.116
25 C 0.030 3.970
26 N -0.514 5.514
27 C 0.010 3.990
28 C 0.041 3.959
29 H 0.062 0.938
30 H 0.058 0.942
31 H 0.067 0.933
32 H 0.077 0.923
33 H 0.088 0.912
34 H 0.066 0.934
35 H 0.065 0.935
36 H 0.400 0.600
37 H 0.097 0.903
38 H 0.097 0.903
39 H 0.271 0.729
40 H 0.402 0.598
41 H 0.076 0.924
42 H 0.094 0.906
43 H 0.084 0.916
44 H 0.047 0.953
45 H 0.032 0.968
46 H 0.073 0.927
47 H 0.071 0.929
48 H 0.052 0.948
49 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.829 4.377 -21.239 29.385
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.040 3.960
3 H 0.110 0.890
4 C -0.178 4.178
5 C -0.003 4.003
6 N -0.393 5.393
7 C 0.316 3.684
8 O -0.393 6.393
9 C -0.275 4.275
10 S 0.084 5.916
11 C -0.669 4.669
12 H 0.106 0.894
13 C -0.113 4.113
14 N -0.516 5.516
15 Si 0.682 3.318
16 H -0.192 1.192
17 H -0.199 1.199
18 H -0.159 1.159
19 N -0.376 5.376
20 C 0.308 3.692
21 O -0.412 6.412
22 C -0.137 4.137
23 H 0.125 0.875
24 C -0.154 4.154
25 C -0.098 4.098
26 N -0.237 5.237
27 C -0.138 4.138
28 C -0.088 4.088
29 H 0.081 0.919
30 H 0.077 0.923
31 H 0.086 0.914
32 H 0.096 0.904
33 H 0.107 0.893
34 H 0.084 0.916
35 H 0.083 0.917
36 H 0.234 0.766
37 H 0.115 0.885
38 H 0.115 0.885
39 H 0.081 0.919
40 H 0.236 0.764
41 H 0.095 0.905
42 H 0.113 0.887
43 H 0.102 0.898
44 H 0.065 0.935
45 H 0.051 0.949
46 H 0.092 0.908
47 H 0.090 0.910
48 H 0.071 0.929
49 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -18.673 5.629 -22.763 29.976
hybrid contribution -0.135 -0.542 1.715 1.803
sum -18.809 5.087 -21.049 28.683
Atomic orbital electron populations
1.22159 0.94698 1.02312 1.02845 1.20899 0.94243 0.97721 0.83169
0.88971 1.22131 0.95305 1.02055 0.98339 1.21261 0.92753 0.97940
0.88307 1.45961 1.07731 1.58474 1.27111 1.20300 0.81633 0.79727
0.86778 1.90705 1.54997 1.44500 1.49144 1.23280 1.03092 1.03252
0.97864 1.84805 0.98073 1.73926 1.34795 1.22309 0.97289 1.39586
1.07737 0.89375 1.24715 0.98315 0.93888 0.94411 1.69932 1.21746
1.39461 1.20502 0.86734 0.82159 0.79908 0.83037 1.19205 1.19917
1.15945 1.46130 1.67623 1.14192 1.09689 1.20504 0.76905 0.87233
0.84530 1.90686 1.49899 1.15957 1.84688 1.22072 0.97978 0.99911
0.93732 0.87509 1.22332 0.96339 1.00697 0.96047 1.23174 0.94712
0.90854 1.01094 1.65417 1.05682 1.31221 1.21409 1.22548 0.87764
1.01847 1.01685 1.23097 0.91916 1.02020 0.91745 0.91911 0.92289
0.91364 0.90412 0.89328 0.91578 0.91667 0.76641 0.88490 0.88454
0.91915 0.76377 0.90488 0.88749 0.89782 0.93468 0.94894 0.90816
0.91026 0.92921 0.89165
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.98 9.48 37.16 0.35 -0.63 16
2 C 0.14 1.00 2.57 -67.93 -0.17 0.82 16
3 H 0.09 0.84 7.58 -51.93 -0.39 0.44 16
4 C -0.14 -0.83 4.87 -26.74 -0.13 -0.96 16
5 C 0.12 1.19 5.56 -4.04 -0.02 1.17 16
6 N -0.74 -8.45 5.56 -60.29 -0.33 -8.79 16
7 C 0.53 9.02 7.85 -10.99 -0.09 8.93 16
8 O -0.52 -10.97 15.86 5.56 0.09 -10.88 16
9 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16
10 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16
11 C -0.52 -14.87 10.04 30.94 0.31 -14.56 16
12 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16
13 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16
14 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16
15 Si 0.86 21.65 27.74 -169.99 -4.71 16.93 16
16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16
17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16
18 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16
19 N -0.72 -4.90 4.50 -53.81 -0.24 -5.15 16
20 C 0.52 4.70 6.97 -10.99 -0.08 4.63 16
21 O -0.54 -6.77 14.92 5.55 0.08 -6.68 16
22 C -0.12 -0.84 3.45 -90.39 -0.31 -1.15 16
23 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16
24 C -0.12 -0.91 6.59 -25.35 -0.17 -1.07 16
25 C 0.03 0.24 6.49 -2.19 -0.01 0.22 16
26 N -0.51 -4.47 5.66 -238.24 -1.35 -5.82 16
27 C 0.01 0.08 9.53 60.07 0.57 0.66 16
28 C 0.04 0.33 6.01 -2.18 -0.01 0.31 16
29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
31 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16
32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16
33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
35 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16
36 H 0.40 3.34 8.47 -40.82 -0.35 2.99 16
37 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16
38 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16
39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16
40 H 0.40 1.92 8.60 -40.82 -0.35 1.57 16
41 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
42 H 0.09 0.89 6.46 -51.93 -0.34 0.56 16
43 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16
44 H 0.05 0.42 7.97 -51.93 -0.41 0.00 16
45 H 0.03 0.29 7.98 -51.93 -0.41 -0.12 16
46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
47 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16
48 H 0.05 0.50 7.62 -51.94 -0.40 0.11 16
49 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16
LS Contribution 411.52 15.07 6.20 6.20
Total: -1.00 -35.98 411.52 -9.67 -45.65
By element:
Atomic # 1 Polarization: 9.27 SS G_CDS: -8.55 Total: 0.72 kcal
Atomic # 6 Polarization: -1.42 SS G_CDS: 0.36 Total: -1.05 kcal
Atomic # 7 Polarization: -44.18 SS G_CDS: -1.15 Total: -45.34 kcal
Atomic # 8 Polarization: -17.73 SS G_CDS: 0.17 Total: -17.56 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal
Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.56 kcal
Total LS contribution 6.20 Total: 6.20 kcal
Total: -35.98 -9.67 -45.65 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001075677915.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.251 kcal
(2) G-P(sol) polarization free energy of solvation -35.981 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.232 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.651 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.902 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds